RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 NDUFC2O95298 119 aa8.68□□□□□ -1.02
LIG1-221ENST00000613670 C1orf43Q9BWL3 253 aa8.68□□□□□ -1.02
LIG1-221ENST00000613670 C3orf84H3BNL1 204 aa8.67□□□□□ -1.02
LIG1-221ENST00000613670 DPH3Q96FX2 82 aa8.67□□□□□ -1.02
LIG1-221ENST00000613670 PDE6GP18545 87 aa8.66□□□□□ -1.02
LIG1-221ENST00000613670 ZNF73O43830 326 aaPredicted RBP8.66□□□□□ -1.02
LIG1-221ENST00000613670 Q6ZVQ6 151 aa8.66□□□□□ -1.02
LIG1-221ENST00000613670 CELSR2Q9HCU4 2923 aa8.66□□□□□ -1.02
LIG1-221ENST00000613670 PRB2P02812 416 aaPredicted RBP8.65□□□□□ -1.02
LIG1-221ENST00000613670 C22orf24Q9Y442 160 aa8.65□□□□□ -1.02
LIG1-221ENST00000613670 LINC01547P58512 204 aaPredicted RBP8.65□□□□□ -1.03
LIG1-221ENST00000613670 CSNK1G2-AS1Q8NCQ2 148 aa8.64□□□□□ -1.03
LIG1-221ENST00000613670 SETXQ7Z333 2677 aaKnown RBP8.64□□□□□ -1.03
LIG1-221ENST00000613670 F8WEM9 126 aa8.64□□□□□ -1.03
LIG1-221ENST00000613670 UNC79Q9P2D8 2635 aa8.64□□□□□ -1.03
LIG1-221ENST00000613670 RMI2Q96E14 147 aa8.64□□□□□ -1.03
LIG1-221ENST00000613670 C2orf48Q96LS8 159 aa8.63□□□□□ -1.03
LIG1-221ENST00000613670 USP24Q9UPU5 2620 aa8.63□□□□□ -1.03
LIG1-221ENST00000613670 LELP1Q5T871 98 aa8.63□□□□□ -1.03
LIG1-221ENST00000613670 Q8N9L7 120 aa8.63□□□□□ -1.03
LIG1-221ENST00000613670 C4orf26Q17RF5 130 aa8.62□□□□□ -1.03
LIG1-221ENST00000613670 CYSTM1Q9H1C7 97 aa8.62□□□□□ -1.03
LIG1-221ENST00000613670 TRAV7A0A075B6U4 112 aa8.62□□□□□ -1.03
LIG1-221ENST00000613670 BPY2O14599 106 aa8.62□□□□□ -1.03
LIG1-221ENST00000613670 MRAPQ8TCY5 172 aa8.62□□□□□ -1.03
LIG1-221ENST00000613670 X6R8D5 127 aa8.62□□□□□ -1.03
LIG1-221ENST00000613670 CELA1Q9UNI1 258 aa8.62□□□□□ -1.03
LIG1-221ENST00000613670 BSNQ9UPA5 3926 aa8.62□□□□□ -1.03
LIG1-221ENST00000613670 C19orf73Q9NVV2 129 aa8.61□□□□□ -1.03
LIG1-221ENST00000613670 CR1P17927 2039 aa8.61□□□□□ -1.03
LIG1-221ENST00000613670 MPLKIPQ8TAP9 179 aa8.61□□□□□ -1.03
LIG1-221ENST00000613670 MUC7Q8TAX7 377 aa8.61□□□□□ -1.03
LIG1-221ENST00000613670 FUSP35637 526 aaKnown RBP eCLIP8.61□□□□□ -1.03
LIG1-221ENST00000613670 LY6G6DO95868 133 aa8.6□□□□□ -1.03
LIG1-221ENST00000613670 ETDCA0A1B0GVM5 59 aa8.6□□□□□ -1.03
LIG1-221ENST00000613670 TRAV10A0A0B4J240 114 aa8.6□□□□□ -1.03
LIG1-221ENST00000613670 UBE2BP63146 152 aa8.59□□□□□ -1.03
LIG1-221ENST00000613670 KIAA0087Q14695 138 aa8.59□□□□□ -1.03
LIG1-221ENST00000613670 Q6ZQT0 140 aa8.59□□□□□ -1.03
LIG1-221ENST00000613670 MIFP14174 115 aa8.59□□□□□ -1.04
LIG1-221ENST00000613670 UBR5O95071 2799 aaPredicted RBP8.58□□□□□ -1.04
LIG1-221ENST00000613670 H3BQ85 93 aa8.58□□□□□ -1.04
LIG1-221ENST00000613670 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.58□□□□□ -1.04
LIG1-221ENST00000613670 M0R2N4 97 aa8.58□□□□□ -1.04
LIG1-221ENST00000613670 SPATA3Q8NHX4 192 aa8.58□□□□□ -1.04
LIG1-221ENST00000613670 INAFM1C9JVW0 142 aa8.58□□□□□ -1.04
LIG1-221ENST00000613670 NANOS2P60321 138 aaKnown RBP8.58□□□□□ -1.04
LIG1-221ENST00000613670 RPS28P62857 69 aaKnown RBP8.57□□□□□ -1.04
LIG1-221ENST00000613670 KPRPQ5T749 579 aaPredicted RBP8.57□□□□□ -1.04
LIG1-221ENST00000613670 WFDC10BQ8IUB3 73 aa8.57□□□□□ -1.04
LIG1-221ENST00000613670 RPL37AP8A6NKH3 93 aa8.56□□□□□ -1.04
LIG1-221ENST00000613670 M0R378 163 aa8.56□□□□□ -1.04
LIG1-221ENST00000613670 C16orf95Q9H693 158 aa8.56□□□□□ -1.04
LIG1-221ENST00000613670 BRK1Q8WUW1 75 aa8.56□□□□□ -1.04
LIG1-221ENST00000613670 RETNQ9HD89 108 aa8.56□□□□□ -1.04
LIG1-221ENST00000613670 C6orf48Q9UBA6 75 aa8.56□□□□□ -1.04
LIG1-221ENST00000613670 J3QKU1 62 aa8.56□□□□□ -1.04
LIG1-221ENST00000613670 HELZ2Q9BYK8 2649 aaKnown RBP8.55□□□□□ -1.04
LIG1-221ENST00000613670 IGHV4-30-4P0DP06 118 aa8.55□□□□□ -1.04
LIG1-221ENST00000613670 OBSCN-AS1Q96MR7 158 aa8.55□□□□□ -1.04
LIG1-221ENST00000613670 SYCNQ0VAF6 134 aa8.54□□□□□ -1.04
LIG1-221ENST00000613670 Q6ZRU5 148 aa8.54□□□□□ -1.04
LIG1-221ENST00000613670 PKIGQ9Y2B9 76 aa8.53□□□□□ -1.04
LIG1-221ENST00000613670 NIPBLQ6KC79 2804 aaeCLIP8.53□□□□□ -1.04
LIG1-221ENST00000613670 TM2D3Q9BRN9 247 aa8.53□□□□□ -1.04
LIG1-221ENST00000613670 APCP25054 2843 aa8.52□□□□□ -1.04
LIG1-221ENST00000613670 SERP1Q9Y6X1 66 aa8.52□□□□□ -1.04
LIG1-221ENST00000613670 LYPD5Q6UWN5 251 aa8.52□□□□□ -1.05
LIG1-221ENST00000613670 A0A0U1RQV1 116 aa8.52□□□□□ -1.05
LIG1-221ENST00000613670 NDUFC2-KCTD14E9PQ53 114 aa8.52□□□□□ -1.05
LIG1-221ENST00000613670 PRR4Q16378 134 aa8.51□□□□□ -1.05
LIG1-221ENST00000613670 Q8NDZ9 215 aa8.51□□□□□ -1.05
LIG1-221ENST00000613670 OXLD1Q5BKU9 147 aa8.51□□□□□ -1.05
LIG1-221ENST00000613670 FAM30AQ9NZY2 134 aa8.51□□□□□ -1.05
LIG1-221ENST00000613670 TEP1Q99973 2627 aaKnown RBP8.51□□□□□ -1.05
LIG1-221ENST00000613670 LRCOL1A6NCL2 159 aa8.5□□□□□ -1.05
LIG1-221ENST00000613670 EGFEM1PQ0D2K5 195 aa8.5□□□□□ -1.05
LIG1-221ENST00000613670 ITPR2Q14571 2701 aa8.5□□□□□ -1.05
LIG1-221ENST00000613670 Q6ZTC4 211 aa8.5□□□□□ -1.05
LIG1-221ENST00000613670 TMEM254Q8TBM7 123 aa8.49□□□□□ -1.05
LIG1-221ENST00000613670 LOC110117498A0A087WWA1 95 aa8.49□□□□□ -1.05
LIG1-221ENST00000613670 DEFB131BA0A096LNP1 70 aa8.49□□□□□ -1.05
LIG1-221ENST00000613670 SMIM26A0A096LP01 95 aa8.48□□□□□ -1.05
LIG1-221ENST00000613670 A0A0J9YWU9 116 aa8.48□□□□□ -1.05
LIG1-221ENST00000613670 IGLV6-57P01721 117 aa8.48□□□□□ -1.05
LIG1-221ENST00000613670 KRTAP1-3Q8IUG1 177 aa8.48□□□□□ -1.05
LIG1-221ENST00000613670 CXCL6P80162 114 aa8.48□□□□□ -1.05
LIG1-221ENST00000613670 PSCAO43653 123 aa8.48□□□□□ -1.05
LIG1-221ENST00000613670 IGKV2-24A0A0C4DH68 120 aa8.48□□□□□ -1.05
LIG1-221ENST00000613670 NDUFC1O43677 76 aa8.47□□□□□ -1.05
LIG1-221ENST00000613670 LINC00167Q96N53 147 aa8.47□□□□□ -1.05
LIG1-221ENST00000613670 C11orf45Q8TAV5 145 aa8.46□□□□□ -1.06
LIG1-221ENST00000613670 HIGD2AQ9BW72 106 aa8.46□□□□□ -1.06
LIG1-221ENST00000613670 TRBV7-6A0A0J9YX20 115 aa8.45□□□□□ -1.06
LIG1-221ENST00000613670 LINC00612Q8N6U2 182 aa8.45□□□□□ -1.06
LIG1-221ENST00000613670 ELOF1P60002 83 aaKnown RBP8.45□□□□□ -1.06
LIG1-221ENST00000613670 KRTAP10-3P60369 221 aa8.45□□□□□ -1.06
LIG1-221ENST00000613670 Q8NAQ8 132 aa8.45□□□□□ -1.06
LIG1-221ENST00000613670 CSMD2Q7Z408 3487 aa8.44□□□□□ -1.06
LIG1-221ENST00000613670 A0A096LNI7 61 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms