RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MEIG1Q5JSS6 88 aa9.25□□□□□ -0.93
UPF1-202ENST00000594243 IGLV5-37A0A075B6J1 123 aa9.24□□□□□ -0.93
UPF1-202ENST00000594243 J3QQQ9 107 aa9.24□□□□□ -0.93
UPF1-202ENST00000594243 RPL24P83731 157 aaKnown RBP9.24□□□□□ -0.93
UPF1-202ENST00000594243 LINC01545Q5VT33 79 aa9.24□□□□□ -0.93
UPF1-202ENST00000594243 KRTAP11-1Q8IUC1 163 aa9.24□□□□□ -0.93
UPF1-202ENST00000594243 NKAPP1Q8N9T2 125 aa9.24□□□□□ -0.93
UPF1-202ENST00000594243 IGLV7-43P04211 117 aa9.23□□□□□ -0.93
UPF1-202ENST00000594243 C3orf79P0CE67 100 aa9.23□□□□□ -0.93
UPF1-202ENST00000594243 NMUP48645 174 aa9.23□□□□□ -0.93
UPF1-202ENST00000594243 A0A0U1RRA0 63 aa9.22□□□□□ -0.93
UPF1-202ENST00000594243 SMIM13P0DJ93 91 aa9.22□□□□□ -0.93
UPF1-202ENST00000594243 LGALS3P17931 250 aaKnown RBP9.22□□□□□ -0.93
UPF1-202ENST00000594243 REG3GQ6UW15 175 aa9.22□□□□□ -0.93
UPF1-202ENST00000594243 LINC00167Q96N53 147 aa9.22□□□□□ -0.93
UPF1-202ENST00000594243 E9PLD3 99 aa9.21□□□□□ -0.94
UPF1-202ENST00000594243 TSPEAR-AS2P59090 65 aa9.21□□□□□ -0.94
UPF1-202ENST00000594243 KRTDAPP60985 99 aa9.21□□□□□ -0.94
UPF1-202ENST00000594243 C20orf202A1L168 122 aa9.19□□□□□ -0.94
UPF1-202ENST00000594243 RPL37AP8A6NKH3 93 aa9.19□□□□□ -0.94
UPF1-202ENST00000594243 S100A6P06703 90 aa9.19□□□□□ -0.94
UPF1-202ENST00000594243 VPREB1P12018 145 aa9.19□□□□□ -0.94
UPF1-202ENST00000594243 MIR7-3HGQ8N6C7 128 aa9.19□□□□□ -0.94
UPF1-202ENST00000594243 GAGE10A6NGK3 116 aa9.18□□□□□ -0.94
UPF1-202ENST00000594243 S100A2P29034 98 aa9.18□□□□□ -0.94
UPF1-202ENST00000594243 AKR1D1P51857 326 aa9.18□□□□□ -0.94
UPF1-202ENST00000594243 DIRC1Q969H9 104 aa9.18□□□□□ -0.94
UPF1-202ENST00000594243 LINC01600Q96MT4 127 aa9.17□□□□□ -0.94
UPF1-202ENST00000594243 LRP1Q07954 4544 aaKnown RBP9.15□□□□□ -0.94
UPF1-202ENST00000594243 IGLV1-50A0A075B6I6 118 aa9.15□□□□□ -0.94
UPF1-202ENST00000594243 ZNF861PO60384 105 aa9.15□□□□□ -0.94
UPF1-202ENST00000594243 BCE1O60756 84 aa9.15□□□□□ -0.94
UPF1-202ENST00000594243 HIST3H2BBQ8N257 126 aa9.15□□□□□ -0.94
UPF1-202ENST00000594243 IGKV2-28A0A075B6P5 120 aa9.14□□□□□ -0.95
UPF1-202ENST00000594243 H0Y9J4 135 aa9.14□□□□□ -0.95
UPF1-202ENST00000594243 IGKV2D-28P01615 120 aa9.14□□□□□ -0.95
UPF1-202ENST00000594243 BOD1L2Q8IYS8 172 aa9.14□□□□□ -0.95
UPF1-202ENST00000594243 LOC107984156A0A0G2JMH3 177 aa9.13□□□□□ -0.95
UPF1-202ENST00000594243 M0R378 163 aa9.13□□□□□ -0.95
UPF1-202ENST00000594243 ARL17AQ8IVW1 177 aa9.13□□□□□ -0.95
UPF1-202ENST00000594243 Q8NDZ9 215 aa9.13□□□□□ -0.95
UPF1-202ENST00000594243 PKHD1L1Q86WI1 4243 aa9.13□□□□□ -0.95
UPF1-202ENST00000594243 FAT3Q8TDW7 4589 aa9.12□□□□□ -0.95
UPF1-202ENST00000594243 A0A0J9YXY3 114 aa9.12□□□□□ -0.95
UPF1-202ENST00000594243 RPL28P46779 137 aaKnown RBP9.12□□□□□ -0.95
UPF1-202ENST00000594243 HIST1H2BLQ99880 126 aa9.12□□□□□ -0.95
UPF1-202ENST00000594243 MIEN1Q9BRT3 115 aa9.12□□□□□ -0.95
UPF1-202ENST00000594243 IGKV2D-26A0A0A0MRZ7 120 aa9.11□□□□□ -0.95
UPF1-202ENST00000594243 MT1HL1P0DM35 61 aa9.11□□□□□ -0.95
UPF1-202ENST00000594243 DAND5Q8N907 189 aa9.11□□□□□ -0.95
UPF1-202ENST00000594243 SNRPEP62304 92 aaKnown RBP9.1□□□□□ -0.95
UPF1-202ENST00000594243 ZNF815PA8K554 130 aa9.09□□□□□ -0.95
UPF1-202ENST00000594243 UBE2AP49459 152 aa9.09□□□□□ -0.95
UPF1-202ENST00000594243 TMEM126AQ9H061 195 aa9.09□□□□□ -0.95
UPF1-202ENST00000594243 TIMM17BO60830 172 aa9.08□□□□□ -0.96
UPF1-202ENST00000594243 ATOH7Q8N100 152 aa9.08□□□□□ -0.96
UPF1-202ENST00000594243 TMEM238C9JI98 176 aa9.07□□□□□ -0.96
UPF1-202ENST00000594243 NCR3O14931 201 aa9.07□□□□□ -0.96
UPF1-202ENST00000594243 NDUFC2O95298 119 aa9.07□□□□□ -0.96
UPF1-202ENST00000594243 KRTAP10-8P60410 259 aa9.07□□□□□ -0.96
UPF1-202ENST00000594243 S100A12P80511 92 aa9.07□□□□□ -0.96
UPF1-202ENST00000594243 ADAMTSL4-AS1Q5T5F5 129 aa9.07□□□□□ -0.96
UPF1-202ENST00000594243 TRBV10-2A0A0K0K1G8 114 aa9.06□□□□□ -0.96
UPF1-202ENST00000594243 C5orf52A6NGY3 159 aa9.06□□□□□ -0.96
UPF1-202ENST00000594243 FAM19A1Q7Z5A9 133 aa9.06□□□□□ -0.96
UPF1-202ENST00000594243 ANKRD39Q53RE8 183 aa9.05□□□□□ -0.96
UPF1-202ENST00000594243 TTTY13Q9BZ97 58 aa9.05□□□□□ -0.96
UPF1-202ENST00000594243 SPANXB1Q9NS25 103 aaPredicted RBP9.05□□□□□ -0.96
UPF1-202ENST00000594243 HMCN2Q8NDA2 5059 aa9.04□□□□□ -0.96
UPF1-202ENST00000594243 PRYO14603 147 aa9.04□□□□□ -0.96
UPF1-202ENST00000594243 NPC2P61916 151 aa9.04□□□□□ -0.96
UPF1-202ENST00000594243 SCGB1D4Q6XE38 83 aa9.04□□□□□ -0.96
UPF1-202ENST00000594243 KRTAP13-1Q8IUC0 172 aa9.04□□□□□ -0.96
UPF1-202ENST00000594243 HSBP1L1C9JCN9 74 aa9.03□□□□□ -0.96
UPF1-202ENST00000594243 KRTAP1-4P0C5Y4 121 aa9.03□□□□□ -0.96
UPF1-202ENST00000594243 LITAFQ99732 161 aa9.03□□□□□ -0.96
UPF1-202ENST00000594243 KCNQ1DNQ9H478 68 aa9.03□□□□□ -0.96
UPF1-202ENST00000594243 TRBV10-3A0A0K0K1G6 114 aa9.02□□□□□ -0.97
UPF1-202ENST00000594243 DDTP30046 118 aa9.02□□□□□ -0.97
UPF1-202ENST00000594243 PRLHP81277 87 aa9.02□□□□□ -0.97
UPF1-202ENST00000594243 S100A7L2Q5SY68 101 aa9.02□□□□□ -0.97
UPF1-202ENST00000594243 SOSTDC1Q6X4U4 206 aa9.02□□□□□ -0.97
UPF1-202ENST00000594243 LINC00308Q8TCZ7 52 aa9.02□□□□□ -0.97
UPF1-202ENST00000594243 PRR26Q8N8Z3 221 aa9.01□□□□□ -0.97
UPF1-202ENST00000594243 EIF4EBP3O60516 100 aaPredicted RBP9□□□□□ -0.97
UPF1-202ENST00000594243 SCGB1D1O95968 90 aa9□□□□□ -0.97
UPF1-202ENST00000594243 SPRR1AP35321 89 aa9□□□□□ -0.97
UPF1-202ENST00000594243 RPL13AP40429 203 aaKnown RBP9□□□□□ -0.97
UPF1-202ENST00000594243 LINC00337Q8N6G1 96 aa9□□□□□ -0.97
UPF1-202ENST00000594243 SPANXCQ9NY87 97 aa9□□□□□ -0.97
UPF1-202ENST00000594243 PCP2Q8IVA1 136 aa8.99□□□□□ -0.97
UPF1-202ENST00000594243 COPS9Q8WXC6 57 aa8.99□□□□□ -0.97
UPF1-202ENST00000594243 SPANXDQ9BXN6 97 aa8.99□□□□□ -0.97
UPF1-202ENST00000594243 ETDCA0A1B0GVM5 59 aa8.98□□□□□ -0.97
UPF1-202ENST00000594243 IGLV6-57P01721 117 aa8.98□□□□□ -0.97
UPF1-202ENST00000594243 Q6ZVH6 145 aa8.98□□□□□ -0.97
UPF1-202ENST00000594243 CBY1Q9Y3M2 126 aa8.98□□□□□ -0.97
UPF1-202ENST00000594243 IFITM1P13164 125 aa8.96□□□□□ -0.98
UPF1-202ENST00000594243 LINC00518Q8N0U6 118 aa8.96□□□□□ -0.98
UPF1-202ENST00000594243 HIGD2AQ9BW72 106 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms