RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 HBDP02042 147 aa13.77□□□□□ -0.21
LSM4-202ENST00000593564 LINC00614P0C842 121 aa13.76□□□□□ -0.21
LSM4-202ENST00000593564 C11orf86A6NJI1 115 aa13.75□□□□□ -0.21
LSM4-202ENST00000593564 C3orf22Q8N5N4 141 aa13.75□□□□□ -0.21
LSM4-202ENST00000593564 C18orf32Q8TCD1 76 aa13.75□□□□□ -0.21
LSM4-202ENST00000593564 RHEBQ15382 184 aa13.74□□□□□ -0.21
LSM4-202ENST00000593564 TMEM170BQ5T4T1 132 aa13.74□□□□□ -0.21
LSM4-202ENST00000593564 HIGD2AQ9BW72 106 aa13.74□□□□□ -0.21
LSM4-202ENST00000593564 IFITM2Q01629 132 aa13.73□□□□□ -0.21
LSM4-202ENST00000593564 BAGE3Q86Y29 109 aa13.73□□□□□ -0.21
LSM4-202ENST00000593564 PMCHL1Q16048 86 aa13.72□□□□□ -0.21
LSM4-202ENST00000593564 C10orf91Q5T1B1 145 aa13.71□□□□□ -0.21
LSM4-202ENST00000593564 SPAG11AQ6PDA7 123 aa13.71□□□□□ -0.21
LSM4-202ENST00000593564 RPS10P5Q9NQ39 176 aa13.71□□□□□ -0.21
LSM4-202ENST00000593564 SPRR4Q96PI1 79 aa13.7□□□□□ -0.22
LSM4-202ENST00000593564 TRAPPC1Q9Y5R8 145 aa13.7□□□□□ -0.22
LSM4-202ENST00000593564 LINC00158P58513 81 aa13.69□□□□□ -0.22
LSM4-202ENST00000593564 PPDPFQ9H3Y8 114 aa13.69□□□□□ -0.22
LSM4-202ENST00000593564 COMMD7Q86VX2 200 aa13.68□□□□□ -0.22
LSM4-202ENST00000593564 CHTOPQ9Y3Y2 248 aaKnown RBP13.66□□□□□ -0.22
LSM4-202ENST00000593564 ZNF706Q9Y5V0 76 aaPredicted RBP13.66□□□□□ -0.22
LSM4-202ENST00000593564 FP248Q71RG6 208 aaPredicted RBP13.64□□□□□ -0.23
LSM4-202ENST00000593564 A0A0U1RRA0 63 aa13.63□□□□□ -0.23
LSM4-202ENST00000593564 TMEM223A0PJW6 202 aa13.63□□□□□ -0.23
LSM4-202ENST00000593564 PRYO14603 147 aa13.62□□□□□ -0.23
LSM4-202ENST00000593564 TRAV12-1A0A0B4J245 112 aa13.6□□□□□ -0.23
LSM4-202ENST00000593564 SPRR1AP35321 89 aa13.6□□□□□ -0.23
LSM4-202ENST00000593564 C4orf48Q5BLP8 95 aa13.6□□□□□ -0.23
LSM4-202ENST00000593564 LINC00337Q8N6G1 96 aa13.6□□□□□ -0.23
LSM4-202ENST00000593564 SMIM13P0DJ93 91 aa13.59□□□□□ -0.23
LSM4-202ENST00000593564 BOD1L2Q8IYS8 172 aa13.59□□□□□ -0.23
LSM4-202ENST00000593564 ATP6V1G1O75348 118 aa13.58□□□□□ -0.24
LSM4-202ENST00000593564 Q8NBF4 154 aa13.58□□□□□ -0.24
LSM4-202ENST00000593564 KCNQ1DNQ9H478 68 aa13.58□□□□□ -0.24
LSM4-202ENST00000593564 KRTAP4-16G5E9R7 235 aaPredicted RBP13.56□□□□□ -0.24
LSM4-202ENST00000593564 NCR3O14931 201 aa13.56□□□□□ -0.24
LSM4-202ENST00000593564 MEIG1Q5JSS6 88 aa13.56□□□□□ -0.24
LSM4-202ENST00000593564 DAND5Q8N907 189 aa13.56□□□□□ -0.24
LSM4-202ENST00000593564 IFI27L1Q96BM0 104 aa13.56□□□□□ -0.24
LSM4-202ENST00000593564 HERV-K104P63124 156 aa13.55□□□□□ -0.24
LSM4-202ENST00000593564 MIR7-3HGQ8N6C7 128 aa13.55□□□□□ -0.24
LSM4-202ENST00000593564 SMCR5Q8TEV8 140 aa13.55□□□□□ -0.24
LSM4-202ENST00000593564 ETDCA0A1B0GVM5 59 aa13.54□□□□□ -0.24
LSM4-202ENST00000593564 KRTAP13-3Q3SY46 172 aa13.54□□□□□ -0.24
LSM4-202ENST00000593564 CHCHD1Q96BP2 118 aaKnown RBP13.54□□□□□ -0.24
LSM4-202ENST00000593564 LINC00587B1AMM8 73 aa13.52□□□□□ -0.25
LSM4-202ENST00000593564 SPINK1P00995 79 aa13.52□□□□□ -0.25
LSM4-202ENST00000593564 LINC00483Q53H64 154 aa13.52□□□□□ -0.25
LSM4-202ENST00000593564 TRBV10-3A0A0K0K1G6 114 aa13.51□□□□□ -0.25
LSM4-202ENST00000593564 NDUFA12Q9UI09 145 aa13.5□□□□□ -0.25
LSM4-202ENST00000593564 APOC3P02656 99 aa13.48□□□□□ -0.25
LSM4-202ENST00000593564 ASB16-AS1Q495Z4 193 aa13.48□□□□□ -0.25
LSM4-202ENST00000593564 MAP1LC3CQ9BXW4 147 aa13.48□□□□□ -0.25
LSM4-202ENST00000593564 MYMXA0A1B0GTQ4 84 aa13.47□□□□□ -0.25
LSM4-202ENST00000593564 S100A12P80511 92 aa13.47□□□□□ -0.25
LSM4-202ENST00000593564 SNAPINO95295 136 aa13.46□□□□□ -0.25
LSM4-202ENST00000593564 B5MCH6 92 aa13.45□□□□□ -0.26
LSM4-202ENST00000593564 GAGE2AQ6NT46 116 aa13.45□□□□□ -0.26
LSM4-202ENST00000593564 SVBPQ8N300 66 aa13.45□□□□□ -0.26
LSM4-202ENST00000593564 YPEL4Q96NS1 127 aa13.44□□□□□ -0.26
LSM4-202ENST00000593564 LOC107984156A0A0G2JMH3 177 aa13.43□□□□□ -0.26
LSM4-202ENST00000593564 KRTAP9-6A0A140TA67 174 aa13.43□□□□□ -0.26
LSM4-202ENST00000593564 RPS29P62273 56 aaKnown RBP13.43□□□□□ -0.26
LSM4-202ENST00000593564 NDUFA5Q16718 116 aa13.43□□□□□ -0.26
LSM4-202ENST00000593564 ARL17AQ8IVW1 177 aa13.43□□□□□ -0.26
LSM4-202ENST00000593564 MOBPQ13875 183 aa13.42□□□□□ -0.26
LSM4-202ENST00000593564 TRBV10-2A0A0K0K1G8 114 aa13.41□□□□□ -0.26
LSM4-202ENST00000593564 HSBP1O75506 76 aa13.41□□□□□ -0.26
LSM4-202ENST00000593564 ERC2-IT1O76042 136 aa13.41□□□□□ -0.26
LSM4-202ENST00000593564 SSBP3-AS1Q7Z2R9 100 aa13.41□□□□□ -0.26
LSM4-202ENST00000593564 FAM19A2Q8N3H0 131 aa13.41□□□□□ -0.26
LSM4-202ENST00000593564 IGLV9-49A0A0B4J1Y8 123 aa13.4□□□□□ -0.26
LSM4-202ENST00000593564 DDTP30046 118 aa13.4□□□□□ -0.26
LSM4-202ENST00000593564 TSPEAR-AS2P59090 65 aa13.4□□□□□ -0.26
LSM4-202ENST00000593564 SEC61BP60468 96 aaKnown RBP13.39□□□□□ -0.27
LSM4-202ENST00000593564 Q8N377 158 aa13.39□□□□□ -0.27
LSM4-202ENST00000593564 Q9BRP9 147 aa13.39□□□□□ -0.27
LSM4-202ENST00000593564 LEPROTO15243 131 aa13.38□□□□□ -0.27
LSM4-202ENST00000593564 Q6ZRX8 168 aa13.38□□□□□ -0.27
LSM4-202ENST00000593564 H0Y8G0 127 aa13.36□□□□□ -0.27
LSM4-202ENST00000593564 KRTAP4-1Q9BYQ7 146 aa13.36□□□□□ -0.27
LSM4-202ENST00000593564 SPANXB1Q9NS25 103 aaPredicted RBP13.36□□□□□ -0.27
LSM4-202ENST00000593564 SLC25A20O43772 301 aa13.35□□□□□ -0.27
LSM4-202ENST00000593564 LINC01547P58512 204 aaPredicted RBP13.34□□□□□ -0.27
LSM4-202ENST00000593564 J3QQQ9 107 aa13.33□□□□□ -0.28
LSM4-202ENST00000593564 PLNP26678 52 aa13.33□□□□□ -0.28
LSM4-202ENST00000593564 LEPROTL1O95214 131 aa13.32□□□□□ -0.28
LSM4-202ENST00000593564 MIEN1Q9BRT3 115 aa13.32□□□□□ -0.28
LSM4-202ENST00000593564 NDUFC2O95298 119 aa13.31□□□□□ -0.28
LSM4-202ENST00000593564 IGLV6-57P01721 117 aa13.31□□□□□ -0.28
LSM4-202ENST00000593564 NMUP48645 174 aa13.31□□□□□ -0.28
LSM4-202ENST00000593564 S100A7L2Q5SY68 101 aa13.3□□□□□ -0.28
LSM4-202ENST00000593564 HERVK_113P61574 105 aa13.29□□□□□ -0.28
LSM4-202ENST00000593564 JOSD1Q15040 202 aaPredicted RBP13.29□□□□□ -0.28
LSM4-202ENST00000593564 TRAV23DV6A0A075B6W5 121 aa13.27□□□□□ -0.29
LSM4-202ENST00000593564 DPM2O94777 84 aa13.27□□□□□ -0.29
LSM4-202ENST00000593564 LGALS3P17931 250 aaKnown RBP13.27□□□□□ -0.29
LSM4-202ENST00000593564 LINC00310P59036 64 aa13.27□□□□□ -0.29
LSM4-202ENST00000593564 XP32Q5T750 250 aa13.27□□□□□ -0.29
LSM4-202ENST00000593564 SERF1AO75920 110 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms