RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 A0A0U1RRA0 63 aa12□□□□□ -0.49
SHMT1-209ENST00000582653 TMEM223A0PJW6 202 aa12□□□□□ -0.49
SHMT1-209ENST00000582653 LINC00158P58513 81 aa12□□□□□ -0.49
SHMT1-209ENST00000582653 KRTAP13-2Q52LG2 175 aa12□□□□□ -0.49
SHMT1-209ENST00000582653 FAM19A1Q7Z5A9 133 aa12□□□□□ -0.49
SHMT1-209ENST00000582653 IFI27L1Q96BM0 104 aa12□□□□□ -0.49
SHMT1-209ENST00000582653 CHCHD1Q96BP2 118 aaKnown RBP12□□□□□ -0.49
SHMT1-209ENST00000582653 SFTA2Q6UW10 78 aa11.99□□□□□ -0.49
SHMT1-209ENST00000582653 TRAV12-1A0A0B4J245 112 aa11.98□□□□□ -0.49
SHMT1-209ENST00000582653 M0R378 163 aa11.98□□□□□ -0.49
SHMT1-209ENST00000582653 FAM19A2Q8N3H0 131 aa11.97□□□□□ -0.49
SHMT1-209ENST00000582653 FAM229BQ4G0N7 80 aa11.96□□□□□ -0.49
SHMT1-209ENST00000582653 CBLN2Q8IUK8 224 aa11.96□□□□□ -0.49
SHMT1-209ENST00000582653 HSBP1O75506 76 aa11.93□□□□□ -0.5
SHMT1-209ENST00000582653 SMIM13P0DJ93 91 aa11.93□□□□□ -0.5
SHMT1-209ENST00000582653 PLEKHB2Q96CS7 222 aa11.91□□□□□ -0.5
SHMT1-209ENST00000582653 IGKV2D-26A0A0A0MRZ7 120 aa11.9□□□□□ -0.5
SHMT1-209ENST00000582653 H0Y8G0 127 aa11.9□□□□□ -0.5
SHMT1-209ENST00000582653 TRGC2P03986 189 aa11.9□□□□□ -0.5
SHMT1-209ENST00000582653 MEIG1Q5JSS6 88 aa11.9□□□□□ -0.5
SHMT1-209ENST00000582653 ATP6V1G1O75348 118 aa11.89□□□□□ -0.51
SHMT1-209ENST00000582653 LINC00304Q8N9R0 145 aa11.89□□□□□ -0.51
SHMT1-209ENST00000582653 RETNLBQ9BQ08 111 aa11.89□□□□□ -0.51
SHMT1-209ENST00000582653 HIGD2AQ9BW72 106 aa11.89□□□□□ -0.51
SHMT1-209ENST00000582653 BOD1L2Q8IYS8 172 aa11.88□□□□□ -0.51
SHMT1-209ENST00000582653 MIR7-3HGQ8N6C7 128 aa11.88□□□□□ -0.51
SHMT1-209ENST00000582653 LINC00310P59036 64 aa11.87□□□□□ -0.51
SHMT1-209ENST00000582653 CTAG1AP78358 180 aa11.87□□□□□ -0.51
SHMT1-209ENST00000582653 NCR3O14931 201 aa11.86□□□□□ -0.51
SHMT1-209ENST00000582653 HERV-K104P63124 156 aa11.86□□□□□ -0.51
SHMT1-209ENST00000582653 C3orf22Q8N5N4 141 aa11.86□□□□□ -0.51
SHMT1-209ENST00000582653 NDUFA12Q9UI09 145 aa11.86□□□□□ -0.51
SHMT1-209ENST00000582653 SERF1AO75920 110 aa11.85□□□□□ -0.51
SHMT1-209ENST00000582653 A0A0U1RQV1 116 aa11.84□□□□□ -0.51
SHMT1-209ENST00000582653 LEPROTL1O95214 131 aa11.84□□□□□ -0.51
SHMT1-209ENST00000582653 TSPEAR-AS2P59090 65 aa11.83□□□□□ -0.52
SHMT1-209ENST00000582653 MYMXA0A1B0GTQ4 84 aa11.82□□□□□ -0.52
SHMT1-209ENST00000582653 SPRR4Q96PI1 79 aa11.82□□□□□ -0.52
SHMT1-209ENST00000582653 PRYO14603 147 aa11.81□□□□□ -0.52
SHMT1-209ENST00000582653 LINC00587B1AMM8 73 aa11.8□□□□□ -0.52
SHMT1-209ENST00000582653 FABP4P15090 132 aa11.8□□□□□ -0.52
SHMT1-209ENST00000582653 SLC7A5P1Q8MH63 180 aa11.8□□□□□ -0.52
SHMT1-209ENST00000582653 DAND5Q8N907 189 aa11.8□□□□□ -0.52
SHMT1-209ENST00000582653 TRBV10-3A0A0K0K1G6 114 aa11.79□□□□□ -0.52
SHMT1-209ENST00000582653 LEPROTO15243 131 aa11.79□□□□□ -0.52
SHMT1-209ENST00000582653 PMCHL2Q9BQD1 86 aa11.79□□□□□ -0.52
SHMT1-209ENST00000582653 KCNQ1DNQ9H478 68 aa11.79□□□□□ -0.52
SHMT1-209ENST00000582653 SPRR1AP35321 89 aa11.78□□□□□ -0.52
SHMT1-209ENST00000582653 LINC00337Q8N6G1 96 aa11.78□□□□□ -0.52
SHMT1-209ENST00000582653 MAP1LC3CQ9BXW4 147 aa11.78□□□□□ -0.52
SHMT1-209ENST00000582653 SMCR5Q8TEV8 140 aa11.77□□□□□ -0.53
SHMT1-209ENST00000582653 KRTAP4-16G5E9R7 235 aaPredicted RBP11.76□□□□□ -0.53
SHMT1-209ENST00000582653 PLNP26678 52 aa11.76□□□□□ -0.53
SHMT1-209ENST00000582653 TPRXLQ17RH7 258 aa11.76□□□□□ -0.53
SHMT1-209ENST00000582653 HSPB8Q9UJY1 196 aa11.76□□□□□ -0.53
SHMT1-209ENST00000582653 IGLV7-46A0A075B6I9 117 aa11.75□□□□□ -0.53
SHMT1-209ENST00000582653 ETDCA0A1B0GVM5 59 aa11.75□□□□□ -0.53
SHMT1-209ENST00000582653 COLCA2A8K830 154 aa11.75□□□□□ -0.53
SHMT1-209ENST00000582653 J3QQQ9 107 aa11.75□□□□□ -0.53
SHMT1-209ENST00000582653 DPM2O94777 84 aa11.75□□□□□ -0.53
SHMT1-209ENST00000582653 CDIP1Q9H305 208 aa11.75□□□□□ -0.53
SHMT1-209ENST00000582653 MUC17Q685J3 4493 aa11.75□□□□□ -0.53
SHMT1-209ENST00000582653 SPAG11AQ6PDA7 123 aa11.74□□□□□ -0.53
SHMT1-209ENST00000582653 PPDPFQ9H3Y8 114 aa11.74□□□□□ -0.53
SHMT1-209ENST00000582653 ZNF706Q9Y5V0 76 aaPredicted RBP11.74□□□□□ -0.53
SHMT1-209ENST00000582653 LOC107984156A0A0G2JMH3 177 aa11.73□□□□□ -0.53
SHMT1-209ENST00000582653 ARL17AQ8IVW1 177 aa11.73□□□□□ -0.53
SHMT1-209ENST00000582653 IGKCP01834 107 aa11.72□□□□□ -0.53
SHMT1-209ENST00000582653 HERVK_113P61574 105 aa11.72□□□□□ -0.53
SHMT1-209ENST00000582653 B5MCH6 92 aa11.7□□□□□ -0.54
SHMT1-209ENST00000582653 LGALS3P17931 250 aaKnown RBP11.7□□□□□ -0.54
SHMT1-209ENST00000582653 DDTP30046 118 aa11.7□□□□□ -0.54
SHMT1-209ENST00000582653 TRBV10-2A0A0K0K1G8 114 aa11.68□□□□□ -0.54
SHMT1-209ENST00000582653 ERC2-IT1O76042 136 aa11.68□□□□□ -0.54
SHMT1-209ENST00000582653 NMUP48645 174 aa11.68□□□□□ -0.54
SHMT1-209ENST00000582653 S100A12P80511 92 aa11.68□□□□□ -0.54
SHMT1-209ENST00000582653 Q8NBF4 154 aa11.68□□□□□ -0.54
SHMT1-209ENST00000582653 C4orf48Q5BLP8 95 aa11.67□□□□□ -0.54
SHMT1-209ENST00000582653 LCE2AQ5TA79 106 aaPredicted RBP11.67□□□□□ -0.54
SHMT1-209ENST00000582653 GAGE2AQ6NT46 116 aa11.67□□□□□ -0.54
SHMT1-209ENST00000582653 MIEN1Q9BRT3 115 aa11.67□□□□□ -0.54
SHMT1-209ENST00000582653 EIF4EBP3O60516 100 aaPredicted RBP11.66□□□□□ -0.54
SHMT1-209ENST00000582653 NPC2P61916 151 aa11.66□□□□□ -0.54
SHMT1-209ENST00000582653 SPANXB1Q9NS25 103 aaPredicted RBP11.66□□□□□ -0.54
SHMT1-209ENST00000582653 LINC00483Q53H64 154 aa11.65□□□□□ -0.54
SHMT1-209ENST00000582653 ADAMTSL4-AS1Q5T5F5 129 aa11.65□□□□□ -0.54
SHMT1-209ENST00000582653 SOSTDC1Q6X4U4 206 aa11.65□□□□□ -0.54
SHMT1-209ENST00000582653 Q9BRP9 147 aa11.65□□□□□ -0.54
SHMT1-209ENST00000582653 A0A0J9YXY3 114 aa11.64□□□□□ -0.55
SHMT1-209ENST00000582653 FAT4Q6V0I7 4981 aa11.63□□□□□ -0.55
SHMT1-209ENST00000582653 NDUFC2O95298 119 aa11.63□□□□□ -0.55
SHMT1-209ENST00000582653 S100A7L2Q5SY68 101 aa11.63□□□□□ -0.55
SHMT1-209ENST00000582653 FP248Q71RG6 208 aaPredicted RBP11.63□□□□□ -0.55
SHMT1-209ENST00000582653 E9PLD3 99 aa11.62□□□□□ -0.55
SHMT1-209ENST00000582653 IGLV6-57P01721 117 aa11.62□□□□□ -0.55
SHMT1-209ENST00000582653 Q6ZRX8 168 aa11.62□□□□□ -0.55
SHMT1-209ENST00000582653 IGLV9-49A0A0B4J1Y8 123 aa11.61□□□□□ -0.55
SHMT1-209ENST00000582653 SYS1-DBNDD2H3BUS1 97 aa11.6□□□□□ -0.55
SHMT1-209ENST00000582653 HIST1H2BKO60814 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 SPINK1P00995 79 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms