RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 UBE2L3P68036 154 aaKnown RBP1.64□□□□□ -2.15
VPS35-209ENST00000568642 KRTAP6-3Q3LI67 103 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 C12orf73Q69YU5 71 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 COMMD6Q7Z4G1 85 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 KRTAP11-1Q8IUC1 163 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 ARL17AQ8IVW1 177 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 DYNLRB2Q8TF09 96 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 MUCL1Q96DR8 90 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 BET1LQ9NYM9 111 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 LPAP08519 4548 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 IGLV3-16A0A075B6K0 115 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 C2orf70A6NJV1 201 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 IGKV3-20P01619 116 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 TRAPPC2P0DI81 140 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 TRAPPC2BP0DI82 140 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 UBE2G1P62253 170 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 CNBPP62633 177 aaKnown RBP1.63□□□□□ -2.15
VPS35-209ENST00000568642 S100A7L2Q5SY68 101 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 TMEM141Q96I45 108 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 LINC00167Q96N53 147 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 Q9BRP9 147 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 DYNLRB1Q9NP97 96 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 PRR34Q9NV39 138 aa1.63□□□□□ -2.15
VPS35-209ENST00000568642 IGKV3D-15A0A087WSY6 115 aa1.62□□□□□ -2.15
VPS35-209ENST00000568642 SNCGO76070 127 aa1.62□□□□□ -2.15
VPS35-209ENST00000568642 BAALC-AS2P0C853 105 aa1.62□□□□□ -2.15
VPS35-209ENST00000568642 ATP5EP56381 51 aaPredicted RBP1.62□□□□□ -2.15
VPS35-209ENST00000568642 PDE6HQ13956 83 aa1.62□□□□□ -2.15
VPS35-209ENST00000568642 LGALSLQ3ZCW2 172 aaPredicted RBP1.62□□□□□ -2.15
VPS35-209ENST00000568642 C9orf116Q5BN46 136 aaPredicted RBP1.62□□□□□ -2.15
VPS35-209ENST00000568642 SLC48A1Q6P1K1 146 aa1.62□□□□□ -2.15
VPS35-209ENST00000568642 OR8B3Q8NGG8 313 aa1.62□□□□□ -2.15
VPS35-209ENST00000568642 ZNF431Q8TF32 576 aaPredicted RBP1.62□□□□□ -2.15
VPS35-209ENST00000568642 PMCHL2Q9BQD1 86 aa1.62□□□□□ -2.15
VPS35-209ENST00000568642 MRPL35Q9NZE8 188 aaKnown RBP1.62□□□□□ -2.15
VPS35-209ENST00000568642 KMT2DO14686 5537 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 TRAV10A0A0B4J240 114 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 F8W1H4 67 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 H7BZZ5 65 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 PEA15Q15121 130 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 SPANXN1Q5VSR9 72 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 Q5VV11 94 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 CASC2Q6XLA1 102 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 C15orf53Q8NAA6 179 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 LINC01600Q96MT4 127 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 ODF3Q96PU9 254 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 SCRT1Q9BWW7 348 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 PROK2Q9HC23 129 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 HIGD1BQ9P298 99 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 PSORS1C2Q9UIG4 136 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 MUC12Q9UKN1 5478 aa1.61□□□□□ -2.15
VPS35-209ENST00000568642 TRAV2A0A0B4J234 112 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 TCRBV4S1A1TA0A5B7 111 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 HMSDA8MTL9 139 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 HCG22E2RYF7 251 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 SPINT3P49223 89 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 KRTAP13-2Q52LG2 175 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 SPANXN5Q5MJ07 72 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 CSAG1Q6PB30 78 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 SPINT4Q6UDR6 99 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 HMGN2P46Q86SG4 172 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 SMIM7Q9BQ49 75 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 CDC42SE1Q9NRR8 79 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 AP4S1Q9Y587 144 aa1.6□□□□□ -2.15
VPS35-209ENST00000568642 A0A0G2JQZ4 141 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 LRCOL1A6NCL2 159 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 H0YGG7 62 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 CYB5AP00167 134 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 KRTAP2-3P0C7H8 128 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 IGLC2P0DOY2 106 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 IGLC3P0DOY3 106 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 UBE2D3P61077 147 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 UBE2D2P62837 147 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 WFDC2Q14508 124 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 KRTAP2-4Q9BYR9 128 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 CYTL1Q9NRR1 136 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 UQCR10Q9UDW1 63 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 CACFD1Q9UGQ2 172 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 C22orf24Q9Y442 160 aa1.59□□□□□ -2.15
VPS35-209ENST00000568642 IGKV3-7A0A075B6H7 116 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 PDCD5O14737 125 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 ERC2-IT1O76042 136 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 IGHV3-33P01772 117 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 APOC3P02656 99 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 GYPAP02724 150 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 MT1HL1P0DM35 61 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 PIPP12273 146 aaPredicted RBP1.58□□□□□ -2.16
VPS35-209ENST00000568642 HINT1P49773 126 aaPredicted RBP1.58□□□□□ -2.16
VPS35-209ENST00000568642 POLR2JP52435 117 aaKnown RBP1.58□□□□□ -2.16
VPS35-209ENST00000568642 CCL8P80075 99 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 HAMPP81172 84 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 ETDBQ3ZM63 59 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 C1orf137Q5JT78 98 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 BVES-AS1Q5T3Y7 98 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 SH2D6Q7Z4S9 175 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 DEFB106AQ8N104 65 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 SERP2Q8N6R1 65 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 S100A16Q96FQ6 103 aaKnown RBP1.58□□□□□ -2.16
VPS35-209ENST00000568642 LIMD2Q9BT23 127 aa1.58□□□□□ -2.16
VPS35-209ENST00000568642 TEX49A0A1B0GTD5 131 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 201.2 ms