RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 COL4A4P53420 1690 aaPredicted RBP9.63□□□□□ -0.87
CSPG4P12-202ENST00000559989 COX6B2Q6YFQ2 88 aa9.62□□□□□ -0.87
CSPG4P12-202ENST00000559989 Q6ZRP5 223 aa9.62□□□□□ -0.87
CSPG4P12-202ENST00000559989 A0A1W2PNU3 283 aaPredicted RBP9.62□□□□□ -0.87
CSPG4P12-202ENST00000559989 CRIP3Q6Q6R5 217 aa9.61□□□□□ -0.87
CSPG4P12-202ENST00000559989 MRPL34Q9BQ48 92 aaKnown RBP9.61□□□□□ -0.87
CSPG4P12-202ENST00000559989 Q6ZRX8 168 aa9.61□□□□□ -0.87
CSPG4P12-202ENST00000559989 IGLV5-39A0A0G2JS06 123 aa9.6□□□□□ -0.87
CSPG4P12-202ENST00000559989 TRBV7-4A0A0J9YYF1 115 aa9.59□□□□□ -0.87
CSPG4P12-202ENST00000559989 LINC01546A6NGU7 62 aa9.59□□□□□ -0.87
CSPG4P12-202ENST00000559989 PRO3102Q9H379 93 aa9.59□□□□□ -0.87
CSPG4P12-202ENST00000559989 NAV3Q8IVL0 2385 aa9.59□□□□□ -0.87
CSPG4P12-202ENST00000559989 WISP2O76076 250 aa9.58□□□□□ -0.88
CSPG4P12-202ENST00000559989 CHTF8P0CG12 524 aa9.58□□□□□ -0.88
CSPG4P12-202ENST00000559989 PHF5AQ7RTV0 110 aaKnown RBP9.57□□□□□ -0.88
CSPG4P12-202ENST00000559989 CSNK1G2-AS1Q8NCQ2 148 aa9.57□□□□□ -0.88
CSPG4P12-202ENST00000559989 FHL3Q13643 280 aa9.57□□□□□ -0.88
CSPG4P12-202ENST00000559989 ATRXP46100 2492 aa9.56□□□□□ -0.88
CSPG4P12-202ENST00000559989 A0A096LNJ9 63 aa9.56□□□□□ -0.88
CSPG4P12-202ENST00000559989 C16orf90A8MZG2 172 aa9.55□□□□□ -0.88
CSPG4P12-202ENST00000559989 LINC00483Q53H64 154 aa9.55□□□□□ -0.88
CSPG4P12-202ENST00000559989 FAM218AQ96MZ4 157 aa9.54□□□□□ -0.88
CSPG4P12-202ENST00000559989 ST20-AS1Q8NBB2 130 aa9.54□□□□□ -0.88
CSPG4P12-202ENST00000559989 RTL8CO15255 209 aa9.53□□□□□ -0.88
CSPG4P12-202ENST00000559989 PTPN13Q12923 2485 aa9.52□□□□□ -0.89
CSPG4P12-202ENST00000559989 FAM208BQ5VWN6 2430 aa9.52□□□□□ -0.89
CSPG4P12-202ENST00000559989 IGHV3OR16-9A0A0B4J2B5 98 aa9.51□□□□□ -0.89
CSPG4P12-202ENST00000559989 SMCPP49901 116 aaPredicted RBP9.51□□□□□ -0.89
CSPG4P12-202ENST00000559989 K7EQZ3 153 aa9.5□□□□□ -0.89
CSPG4P12-202ENST00000559989 IGLV6-57P01721 117 aa9.5□□□□□ -0.89
CSPG4P12-202ENST00000559989 J3QL48 77 aa9.49□□□□□ -0.89
CSPG4P12-202ENST00000559989 RBM12B-AS1Q9P1G2 102 aa9.49□□□□□ -0.89
CSPG4P12-202ENST00000559989 H3BNG1 76 aa9.48□□□□□ -0.89
CSPG4P12-202ENST00000559989 PCSK5Q92824 1860 aa9.47□□□□□ -0.89
CSPG4P12-202ENST00000559989 SMR3AQ99954 134 aa9.47□□□□□ -0.89
CSPG4P12-202ENST00000559989 PRR15Q8IV56 129 aa9.46□□□□□ -0.89
CSPG4P12-202ENST00000559989 IGLV5-45A0A087WSX0 123 aa9.46□□□□□ -0.89
CSPG4P12-202ENST00000559989 ABCA2Q9BZC7 2435 aa9.46□□□□□ -0.9
CSPG4P12-202ENST00000559989 PRO0461Q9UI25 63 aa9.45□□□□□ -0.9
CSPG4P12-202ENST00000559989 A0A0D9SG42 100 aa9.44□□□□□ -0.9
CSPG4P12-202ENST00000559989 AVPP01185 164 aa9.43□□□□□ -0.9
CSPG4P12-202ENST00000559989 DSCR10P59022 87 aa9.43□□□□□ -0.9
CSPG4P12-202ENST00000559989 SONP18583 2426 aaKnown RBP9.43□□□□□ -0.9
CSPG4P12-202ENST00000559989 IGLV5-37A0A075B6J1 123 aa9.42□□□□□ -0.9
CSPG4P12-202ENST00000559989 A0A0A0MQY5 61 aa9.42□□□□□ -0.9
CSPG4P12-202ENST00000559989 C8orf17Q9NRJ1 99 aa9.41□□□□□ -0.9
CSPG4P12-202ENST00000559989 GVQW2A0A096LPI5 108 aaPredicted RBP9.4□□□□□ -0.9
CSPG4P12-202ENST00000559989 KLKP1Q107X0 134 aa9.4□□□□□ -0.9
CSPG4P12-202ENST00000559989 LINC00336Q6ZUF6 198 aa9.4□□□□□ -0.9
CSPG4P12-202ENST00000559989 A0A1B0GVX0 72 aa9.39□□□□□ -0.91
CSPG4P12-202ENST00000559989 LINC00315P59091 139 aa9.39□□□□□ -0.91
CSPG4P12-202ENST00000559989 Q1T7F1 81 aa9.39□□□□□ -0.91
CSPG4P12-202ENST00000559989 OBSCN-AS1Q96MR7 158 aa9.38□□□□□ -0.91
CSPG4P12-202ENST00000559989 LINC00304Q8N9R0 145 aa9.37□□□□□ -0.91
CSPG4P12-202ENST00000559989 FAM104AQ969W3 186 aa9.37□□□□□ -0.91
CSPG4P12-202ENST00000559989 NBDYA0A0U1RRE5 68 aa9.36□□□□□ -0.91
CSPG4P12-202ENST00000559989 GPR179Q6PRD1 2367 aa9.36□□□□□ -0.91
CSPG4P12-202ENST00000559989 C9orf92A6NGG3 77 aa9.35□□□□□ -0.91
CSPG4P12-202ENST00000559989 SPANXA2-OT1Q8N9U9 137 aa9.35□□□□□ -0.91
CSPG4P12-202ENST00000559989 ANKHD1Q8IWZ3 2542 aaKnown RBP9.34□□□□□ -0.91
CSPG4P12-202ENST00000559989 IGLV5-48A0A075B6I7 105 aa9.31□□□□□ -0.92
CSPG4P12-202ENST00000559989 IGFL1Q6UW32 110 aa9.31□□□□□ -0.92
CSPG4P12-202ENST00000559989 MUC22E2RYF6 1773 aaPredicted RBP9.3□□□□□ -0.92
CSPG4P12-202ENST00000559989 ZNF575Q86XF7 245 aa9.3□□□□□ -0.92
CSPG4P12-202ENST00000559989 FAM168BA1KXE4 195 aa9.29□□□□□ -0.92
CSPG4P12-202ENST00000559989 H3BS24 57 aa9.27□□□□□ -0.92
CSPG4P12-202ENST00000559989 H7BZZ5 65 aa9.27□□□□□ -0.92
CSPG4P12-202ENST00000559989 IGLV1-50A0A075B6I6 118 aa9.27□□□□□ -0.93
CSPG4P12-202ENST00000559989 HIVEP3Q5T1R4 2406 aa9.26□□□□□ -0.93
CSPG4P12-202ENST00000559989 KCNQ1DNQ9H478 68 aa9.26□□□□□ -0.93
CSPG4P12-202ENST00000559989 LINC00588Q9Y4M8 146 aa9.25□□□□□ -0.93
CSPG4P12-202ENST00000559989 CAMK2N1Q7Z7J9 78 aa9.25□□□□□ -0.93
CSPG4P12-202ENST00000559989 DNAH10OSP0CZ25 163 aa9.25□□□□□ -0.93
CSPG4P12-202ENST00000559989 MUC6Q6W4X9 2439 aa9.23□□□□□ -0.93
CSPG4P12-202ENST00000559989 CDSNQ15517 529 aa9.22□□□□□ -0.93
CSPG4P12-202ENST00000559989 ZNF861PO60384 105 aa9.22□□□□□ -0.93
CSPG4P12-202ENST00000559989 KRTAP10-9P60411 292 aa9.2□□□□□ -0.94
CSPG4P12-202ENST00000559989 MYO9AB2RTY4 2548 aa9.19□□□□□ -0.94
CSPG4P12-202ENST00000559989 C2CD3Q4AC94 2353 aa9.19□□□□□ -0.94
CSPG4P12-202ENST00000559989 Q8N1X5 172 aa9.19□□□□□ -0.94
CSPG4P12-202ENST00000559989 DMAC1Q96GE9 116 aa9.18□□□□□ -0.94
CSPG4P12-202ENST00000559989 LINC00528Q8N1L1 170 aa9.18□□□□□ -0.94
CSPG4P12-202ENST00000559989 C15orf56Q8N910 161 aa9.17□□□□□ -0.94
CSPG4P12-202ENST00000559989 DOPEY1Q5JWR5 2465 aa9.17□□□□□ -0.94
CSPG4P12-202ENST00000559989 WIPF1O43516 503 aa9.16□□□□□ -0.94
CSPG4P12-202ENST00000559989 Q8N377 158 aa9.16□□□□□ -0.94
CSPG4P12-202ENST00000559989 LITAFQ99732 161 aa9.16□□□□□ -0.94
CSPG4P12-202ENST00000559989 A0A1B0GU33 70 aa9.15□□□□□ -0.94
CSPG4P12-202ENST00000559989 HRES1P13985 223 aa9.15□□□□□ -0.94
CSPG4P12-202ENST00000559989 LRRK2Q5S007 2527 aa9.15□□□□□ -0.94
CSPG4P12-202ENST00000559989 Q8NAQ8 132 aa9.14□□□□□ -0.95
CSPG4P12-202ENST00000559989 PLA2G2DQ9UNK4 145 aa9.14□□□□□ -0.95
CSPG4P12-202ENST00000559989 WWC2-AS2Q96NR7 200 aa9.13□□□□□ -0.95
CSPG4P12-202ENST00000559989 CCDC168Q8NDH2 2452 aa9.12□□□□□ -0.95
CSPG4P12-202ENST00000559989 Q75L30 129 aa9.12□□□□□ -0.95
CSPG4P12-202ENST00000559989 CR1P17927 2039 aa9.11□□□□□ -0.95
CSPG4P12-202ENST00000559989 C9orf163Q8N9P6 203 aa9.11□□□□□ -0.95
CSPG4P12-202ENST00000559989 TLX1NBP0CAT3 122 aa9.08□□□□□ -0.96
CSPG4P12-202ENST00000559989 IGLV7-43P04211 117 aa9.05□□□□□ -0.96
CSPG4P12-202ENST00000559989 Q6ZSA8 131 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms