RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 KRTAP13-3Q3SY46 172 aa13.73□□□□□ -0.21
FOXA1-204ENST00000554607 ZNF625Q96I27 306 aaPredicted RBP13.72□□□□□ -0.21
FOXA1-204ENST00000554607 ZNF22P17026 224 aaPredicted RBP13.71□□□□□ -0.21
FOXA1-204ENST00000554607 NDUFA6P56556 154 aa13.71□□□□□ -0.21
FOXA1-204ENST00000554607 Q8NDZ9 215 aa13.71□□□□□ -0.21
FOXA1-204ENST00000554607 SEC61BP60468 96 aaKnown RBP13.68□□□□□ -0.22
FOXA1-204ENST00000554607 Q8NBF4 154 aa13.68□□□□□ -0.22
FOXA1-204ENST00000554607 SPINK1P00995 79 aa13.67□□□□□ -0.22
FOXA1-204ENST00000554607 S100PP25815 95 aa13.66□□□□□ -0.22
FOXA1-204ENST00000554607 COX19Q49B96 90 aa13.66□□□□□ -0.22
FOXA1-204ENST00000554607 DAND5Q8N907 189 aa13.66□□□□□ -0.22
FOXA1-204ENST00000554607 LINC00158P58513 81 aa13.65□□□□□ -0.22
FOXA1-204ENST00000554607 PRYO14603 147 aa13.62□□□□□ -0.23
FOXA1-204ENST00000554607 FABP9Q0Z7S8 132 aa13.62□□□□□ -0.23
FOXA1-204ENST00000554607 NDUFA12Q9UI09 145 aa13.62□□□□□ -0.23
FOXA1-204ENST00000554607 TMEM170BQ5T4T1 132 aa13.61□□□□□ -0.23
FOXA1-204ENST00000554607 SMCR5Q8TEV8 140 aa13.6□□□□□ -0.23
FOXA1-204ENST00000554607 A0A096LNJ9 63 aa13.59□□□□□ -0.23
FOXA1-204ENST00000554607 C11orf86A6NJI1 115 aa13.59□□□□□ -0.23
FOXA1-204ENST00000554607 KRTAP4-1Q9BYQ7 146 aa13.59□□□□□ -0.23
FOXA1-204ENST00000554607 HBDP02042 147 aa13.57□□□□□ -0.24
FOXA1-204ENST00000554607 SPRR1AP35321 89 aa13.57□□□□□ -0.24
FOXA1-204ENST00000554607 BAGE3Q86Y29 109 aa13.57□□□□□ -0.24
FOXA1-204ENST00000554607 FSIP2Q5CZC0 6907 aa13.56□□□□□ -0.24
FOXA1-204ENST00000554607 ETDCA0A1B0GVM5 59 aa13.56□□□□□ -0.24
FOXA1-204ENST00000554607 ATP6V1G1O75348 118 aa13.56□□□□□ -0.24
FOXA1-204ENST00000554607 LINC00614P0C842 121 aa13.56□□□□□ -0.24
FOXA1-204ENST00000554607 FAM19A2Q8N3H0 131 aa13.56□□□□□ -0.24
FOXA1-204ENST00000554607 KCNQ1DNQ9H478 68 aa13.56□□□□□ -0.24
FOXA1-204ENST00000554607 A0A0U1RRA0 63 aa13.55□□□□□ -0.24
FOXA1-204ENST00000554607 RPS29P62273 56 aaKnown RBP13.55□□□□□ -0.24
FOXA1-204ENST00000554607 LINC00483Q53H64 154 aa13.55□□□□□ -0.24
FOXA1-204ENST00000554607 TMEM218A2RU14 115 aa13.54□□□□□ -0.24
FOXA1-204ENST00000554607 UQCC3Q6UW78 93 aa13.54□□□□□ -0.24
FOXA1-204ENST00000554607 BOD1L2Q8IYS8 172 aa13.54□□□□□ -0.24
FOXA1-204ENST00000554607 SEC11CQ9BY50 192 aa13.53□□□□□ -0.24
FOXA1-204ENST00000554607 CLLU1Q5K131 121 aa13.52□□□□□ -0.25
FOXA1-204ENST00000554607 SSBP3-AS1Q7Z2R9 100 aa13.52□□□□□ -0.25
FOXA1-204ENST00000554607 KRTAP4-16G5E9R7 235 aaPredicted RBP13.51□□□□□ -0.25
FOXA1-204ENST00000554607 NCR3O14931 201 aa13.51□□□□□ -0.25
FOXA1-204ENST00000554607 S100A12P80511 92 aa13.51□□□□□ -0.25
FOXA1-204ENST00000554607 GAGE2AQ6NT46 116 aa13.51□□□□□ -0.25
FOXA1-204ENST00000554607 URB1-AS1Q96HZ7 61 aa13.51□□□□□ -0.25
FOXA1-204ENST00000554607 CRCT1Q9UGL9 99 aa13.51□□□□□ -0.25
FOXA1-204ENST00000554607 SLC25A20O43772 301 aa13.5□□□□□ -0.25
FOXA1-204ENST00000554607 SMIM13P0DJ93 91 aa13.5□□□□□ -0.25
FOXA1-204ENST00000554607 Q8N377 158 aa13.5□□□□□ -0.25
FOXA1-204ENST00000554607 CHTOPQ9Y3Y2 248 aaKnown RBP13.5□□□□□ -0.25
FOXA1-204ENST00000554607 PMCHL1Q16048 86 aa13.49□□□□□ -0.25
FOXA1-204ENST00000554607 C18orf32Q8TCD1 76 aa13.49□□□□□ -0.25
FOXA1-204ENST00000554607 TMEM223A0PJW6 202 aa13.48□□□□□ -0.25
FOXA1-204ENST00000554607 MOBPQ13875 183 aa13.48□□□□□ -0.25
FOXA1-204ENST00000554607 MEIG1Q5JSS6 88 aa13.48□□□□□ -0.25
FOXA1-204ENST00000554607 KRTAP3-3Q9BYR6 98 aa13.48□□□□□ -0.25
FOXA1-204ENST00000554607 KRTAP3-2Q9BYR7 98 aa13.48□□□□□ -0.25
FOXA1-204ENST00000554607 IGLV9-49A0A0B4J1Y8 123 aa13.47□□□□□ -0.25
FOXA1-204ENST00000554607 XP32Q5T750 250 aa13.47□□□□□ -0.25
FOXA1-204ENST00000554607 LINC00587B1AMM8 73 aa13.46□□□□□ -0.25
FOXA1-204ENST00000554607 MIR7-3HGQ8N6C7 128 aa13.46□□□□□ -0.25
FOXA1-204ENST00000554607 TRBV10-3A0A0K0K1G6 114 aa13.45□□□□□ -0.26
FOXA1-204ENST00000554607 HERV-K104P63124 156 aa13.45□□□□□ -0.26
FOXA1-204ENST00000554607 TRAPPC1Q9Y5R8 145 aa13.44□□□□□ -0.26
FOXA1-204ENST00000554607 B5MCH6 92 aa13.43□□□□□ -0.26
FOXA1-204ENST00000554607 MAP1LC3CQ9BXW4 147 aa13.41□□□□□ -0.26
FOXA1-204ENST00000554607 TRAV12-1A0A0B4J245 112 aa13.4□□□□□ -0.26
FOXA1-204ENST00000554607 ERC2-IT1O76042 136 aa13.4□□□□□ -0.26
FOXA1-204ENST00000554607 RPS10P5Q9NQ39 176 aa13.39□□□□□ -0.27
FOXA1-204ENST00000554607 RHEBQ15382 184 aa13.38□□□□□ -0.27
FOXA1-204ENST00000554607 MYMXA0A1B0GTQ4 84 aa13.36□□□□□ -0.27
FOXA1-204ENST00000554607 LCE2CQ5TA81 110 aa13.36□□□□□ -0.27
FOXA1-204ENST00000554607 DDTP30046 118 aa13.35□□□□□ -0.27
FOXA1-204ENST00000554607 IFI27L1Q96BM0 104 aa13.35□□□□□ -0.27
FOXA1-204ENST00000554607 Q9BRP9 147 aa13.35□□□□□ -0.27
FOXA1-204ENST00000554607 TRBV10-2A0A0K0K1G8 114 aa13.34□□□□□ -0.27
FOXA1-204ENST00000554607 Q6ZRX8 168 aa13.34□□□□□ -0.27
FOXA1-204ENST00000554607 LOC107984156A0A0G2JMH3 177 aa13.32□□□□□ -0.28
FOXA1-204ENST00000554607 C9orf153Q5TBE3 101 aa13.32□□□□□ -0.28
FOXA1-204ENST00000554607 ARL17AQ8IVW1 177 aa13.32□□□□□ -0.28
FOXA1-204ENST00000554607 JOSD1Q15040 202 aaPredicted RBP13.3□□□□□ -0.28
FOXA1-204ENST00000554607 C10orf91Q5T1B1 145 aa13.3□□□□□ -0.28
FOXA1-204ENST00000554607 CFC1BP0CG36 223 aa13.29□□□□□ -0.28
FOXA1-204ENST00000554607 CHCHD1Q96BP2 118 aaKnown RBP13.29□□□□□ -0.28
FOXA1-204ENST00000554607 SPANXB1Q9NS25 103 aaPredicted RBP13.28□□□□□ -0.28
FOXA1-204ENST00000554607 KRTAP19-2Q3LHN2 52 aa13.26□□□□□ -0.29
FOXA1-204ENST00000554607 S100A7L2Q5SY68 101 aa13.26□□□□□ -0.29
FOXA1-204ENST00000554607 MT1HP80294 61 aa13.25□□□□□ -0.29
FOXA1-204ENST00000554607 MIEN1Q9BRT3 115 aa13.25□□□□□ -0.29
FOXA1-204ENST00000554607 IFITM2Q01629 132 aa13.24□□□□□ -0.29
FOXA1-204ENST00000554607 COMMD7Q86VX2 200 aa13.24□□□□□ -0.29
FOXA1-204ENST00000554607 IGLV6-57P01721 117 aa13.23□□□□□ -0.29
FOXA1-204ENST00000554607 PCOTHQ58A44 107 aa13.23□□□□□ -0.29
FOXA1-204ENST00000554607 IGLV8-61A0A075B6I0 122 aa13.22□□□□□ -0.29
FOXA1-204ENST00000554607 C5orf52A6NGY3 159 aa13.22□□□□□ -0.29
FOXA1-204ENST00000554607 NDUFC2O95298 119 aa13.22□□□□□ -0.29
FOXA1-204ENST00000554607 TRAV23DV6A0A075B6W5 121 aa13.21□□□□□ -0.29
FOXA1-204ENST00000554607 LEPROTO15243 131 aa13.21□□□□□ -0.29
FOXA1-204ENST00000554607 LIMD2Q9BT23 127 aa13.21□□□□□ -0.29
FOXA1-204ENST00000554607 TSPEAR-AS2P59090 65 aa13.19□□□□□ -0.3
FOXA1-204ENST00000554607 ZNF73O43830 326 aaPredicted RBP13.18□□□□□ -0.3
FOXA1-204ENST00000554607 ST20-AS1Q8NBB2 130 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms