RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 LECT2O14960 151 aa9.44□□□□□ -0.9
SHMT2-208ENST00000553868 PFN2P35080 140 aa9.44□□□□□ -0.9
SHMT2-208ENST00000553868 HINT1P49773 126 aaPredicted RBP9.44□□□□□ -0.9
SHMT2-208ENST00000553868 RNF151Q2KHN1 245 aa9.44□□□□□ -0.9
SHMT2-208ENST00000553868 CARD19Q96LW7 228 aa9.44□□□□□ -0.9
SHMT2-208ENST00000553868 A0A0U1RRA0 63 aa9.43□□□□□ -0.9
SHMT2-208ENST00000553868 KRTAP29-1A8MX34 341 aaPredicted RBP9.43□□□□□ -0.9
SHMT2-208ENST00000553868 PTTG1IPP53801 180 aa9.43□□□□□ -0.9
SHMT2-208ENST00000553868 RPL24P83731 157 aaKnown RBP9.43□□□□□ -0.9
SHMT2-208ENST00000553868 BVES-AS1Q5T3Y7 98 aa9.43□□□□□ -0.9
SHMT2-208ENST00000553868 ADAMTSL4-AS1Q5T5F5 129 aa9.43□□□□□ -0.9
SHMT2-208ENST00000553868 C10orf25Q5T742 122 aa9.43□□□□□ -0.9
SHMT2-208ENST00000553868 Q6ZRU5 148 aa9.43□□□□□ -0.9
SHMT2-208ENST00000553868 PPDPFQ9H3Y8 114 aa9.43□□□□□ -0.9
SHMT2-208ENST00000553868 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-208ENST00000553868 BATFQ16520 125 aa9.42□□□□□ -0.9
SHMT2-208ENST00000553868 MIR7-3HGQ8N6C7 128 aa9.42□□□□□ -0.9
SHMT2-208ENST00000553868 C6orf48Q9UBA6 75 aa9.42□□□□□ -0.9
SHMT2-208ENST00000553868 FAT3Q8TDW7 4589 aa9.42□□□□□ -0.9
SHMT2-208ENST00000553868 A6NDN8 102 aa9.41□□□□□ -0.9
SHMT2-208ENST00000553868 KRTAP10-1P60331 282 aa9.41□□□□□ -0.9
SHMT2-208ENST00000553868 MUSTN1Q8IVN3 82 aa9.41□□□□□ -0.9
SHMT2-208ENST00000553868 LRCOL1A6NCL2 159 aa9.4□□□□□ -0.9
SHMT2-208ENST00000553868 FAM229AH3BQW9 127 aa9.4□□□□□ -0.9
SHMT2-208ENST00000553868 DAND5Q8N907 189 aa9.4□□□□□ -0.9
SHMT2-208ENST00000553868 LINC00308Q8TCZ7 52 aa9.4□□□□□ -0.9
SHMT2-208ENST00000553868 PKIGQ9Y2B9 76 aa9.4□□□□□ -0.9
SHMT2-208ENST00000553868 EREGO14944 169 aa9.39□□□□□ -0.91
SHMT2-208ENST00000553868 CNBPP62633 177 aaKnown RBP9.39□□□□□ -0.91
SHMT2-208ENST00000553868 WFDC2Q14508 124 aa9.39□□□□□ -0.91
SHMT2-208ENST00000553868 C9orf116Q5BN46 136 aaPredicted RBP9.39□□□□□ -0.91
SHMT2-208ENST00000553868 SNHG12Q9BXW3 62 aa9.39□□□□□ -0.91
SHMT2-208ENST00000553868 NDUFC2-KCTD14E9PQ53 114 aa9.38□□□□□ -0.91
SHMT2-208ENST00000553868 FXYD2P54710 66 aa9.38□□□□□ -0.91
SHMT2-208ENST00000553868 LRP2P98164 4655 aa9.37□□□□□ -0.91
SHMT2-208ENST00000553868 A0A087WTM6 91 aa9.37□□□□□ -0.91
SHMT2-208ENST00000553868 NPC2P61916 151 aa9.37□□□□□ -0.91
SHMT2-208ENST00000553868 A4D1N5 150 aa9.36□□□□□ -0.91
SHMT2-208ENST00000553868 TLX1NBP0CAT3 122 aa9.36□□□□□ -0.91
SHMT2-208ENST00000553868 LBHQ53QV2 105 aaPredicted RBP9.36□□□□□ -0.91
SHMT2-208ENST00000553868 COL5A1-AS1Q5SY13 56 aa9.36□□□□□ -0.91
SHMT2-208ENST00000553868 Q8N814 137 aa9.36□□□□□ -0.91
SHMT2-208ENST00000553868 SND1-IT1Q9HBX3 110 aa9.36□□□□□ -0.91
SHMT2-208ENST00000553868 LOC107984156A0A0G2JMH3 177 aa9.35□□□□□ -0.91
SHMT2-208ENST00000553868 LOC107984640A0A0U1RRK4 108 aa9.35□□□□□ -0.91
SHMT2-208ENST00000553868 SLPIP03973 132 aa9.35□□□□□ -0.91
SHMT2-208ENST00000553868 ARL17AQ8IVW1 177 aa9.35□□□□□ -0.91
SHMT2-208ENST00000553868 NHP2Q9NX24 153 aaKnown RBP9.35□□□□□ -0.91
SHMT2-208ENST00000553868 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.34□□□□□ -0.91
SHMT2-208ENST00000553868 SOSTDC1Q6X4U4 206 aa9.34□□□□□ -0.91
SHMT2-208ENST00000553868 PGPEP1Q9NXJ5 209 aa9.34□□□□□ -0.91
SHMT2-208ENST00000553868 DNAH8Q96JB1 4490 aa9.33□□□□□ -0.92
SHMT2-208ENST00000553868 RAB37Q96AX2 223 aa9.33□□□□□ -0.92
SHMT2-208ENST00000553868 A0A0B4J2C4 111 aa9.32□□□□□ -0.92
SHMT2-208ENST00000553868 A0A1B0GWB2 263 aa9.32□□□□□ -0.92
SHMT2-208ENST00000553868 NDUFC2O95298 119 aa9.32□□□□□ -0.92
SHMT2-208ENST00000553868 RPL18AQ02543 176 aaKnown RBP9.32□□□□□ -0.92
SHMT2-208ENST00000553868 EIF4EBP3O60516 100 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-208ENST00000553868 CFC1BP0CG36 223 aa9.3□□□□□ -0.92
SHMT2-208ENST00000553868 CFC1P0CG37 223 aa9.3□□□□□ -0.92
SHMT2-208ENST00000553868 GAGE2EQ4V326 116 aa9.3□□□□□ -0.92
SHMT2-208ENST00000553868 Q6ZRP5 223 aa9.3□□□□□ -0.92
SHMT2-208ENST00000553868 C9orf163Q8N9P6 203 aa9.3□□□□□ -0.92
SHMT2-208ENST00000553868 GAGE2DQ9UEU5 116 aa9.3□□□□□ -0.92
SHMT2-208ENST00000553868 TRAV13-2A0A0B4J235 113 aa9.29□□□□□ -0.92
SHMT2-208ENST00000553868 XAGE1AQ9HD64 81 aa9.29□□□□□ -0.92
SHMT2-208ENST00000553868 PRO1854Q9UHT4 67 aa9.29□□□□□ -0.92
SHMT2-208ENST00000553868 GAGE2BQ13066 116 aa9.28□□□□□ -0.92
SHMT2-208ENST00000553868 K7ERJ3 54 aa9.27□□□□□ -0.93
SHMT2-208ENST00000553868 PKHD1L1Q86WI1 4243 aa9.26□□□□□ -0.93
SHMT2-208ENST00000553868 LINC00474Q9P2X8 69 aa9.26□□□□□ -0.93
SHMT2-208ENST00000553868 IGLV5-52A0A0A0MRZ9 124 aa9.25□□□□□ -0.93
SHMT2-208ENST00000553868 TRBV10-2A0A0K0K1G8 114 aa9.25□□□□□ -0.93
SHMT2-208ENST00000553868 TAX1BP3O14907 124 aa9.24□□□□□ -0.93
SHMT2-208ENST00000553868 RPL13AP40429 203 aaKnown RBP9.24□□□□□ -0.93
SHMT2-208ENST00000553868 C9orf129Q5T035 196 aaKnown RBP9.24□□□□□ -0.93
SHMT2-208ENST00000553868 IGKV2-28A0A075B6P5 120 aa9.23□□□□□ -0.93
SHMT2-208ENST00000553868 IGKV2D-28P01615 120 aa9.23□□□□□ -0.93
SHMT2-208ENST00000553868 Q1RN00 199 aa9.23□□□□□ -0.93
SHMT2-208ENST00000553868 OR13C6PQ8NH95 151 aa9.23□□□□□ -0.93
SHMT2-208ENST00000553868 KRTAP9-2Q9BYQ4 174 aa9.23□□□□□ -0.93
SHMT2-208ENST00000553868 A0A096LNI7 61 aa9.22□□□□□ -0.93
SHMT2-208ENST00000553868 C9orf118A6NHY6 69 aa9.22□□□□□ -0.93
SHMT2-208ENST00000553868 VPREB1P12018 145 aa9.22□□□□□ -0.93
SHMT2-208ENST00000553868 S100A7L2Q5SY68 101 aa9.22□□□□□ -0.93
SHMT2-208ENST00000553868 SDIM1Q6ZPB5 146 aa9.22□□□□□ -0.93
SHMT2-208ENST00000553868 NKAPP1Q8N9T2 125 aa9.22□□□□□ -0.93
SHMT2-208ENST00000553868 CBY1Q9Y3M2 126 aa9.22□□□□□ -0.93
SHMT2-208ENST00000553868 IGKV2-24A0A0C4DH68 120 aa9.21□□□□□ -0.94
SHMT2-208ENST00000553868 M0R378 163 aa9.21□□□□□ -0.94
SHMT2-208ENST00000553868 NCR3O14931 201 aa9.21□□□□□ -0.94
SHMT2-208ENST00000553868 LINC00337Q8N6G1 96 aa9.21□□□□□ -0.94
SHMT2-208ENST00000553868 TMEM126AQ9H061 195 aa9.21□□□□□ -0.94
SHMT2-208ENST00000553868 IGLV5-37A0A075B6J1 123 aa9.2□□□□□ -0.94
SHMT2-208ENST00000553868 H7C2G1 150 aa9.2□□□□□ -0.94
SHMT2-208ENST00000553868 TSPAN13O95857 204 aa9.2□□□□□ -0.94
SHMT2-208ENST00000553868 LYRM7Q5U5X0 104 aa9.2□□□□□ -0.94
SHMT2-208ENST00000553868 PLA2G1BP04054 148 aaKnown RBP9.19□□□□□ -0.94
SHMT2-208ENST00000553868 PSMB2P49721 201 aa9.19□□□□□ -0.94
SHMT2-208ENST00000553868 PRR3P79522 188 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms