RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 LINC00959A0A1B0GUT2 108 aa3.34□□□□□ -1.88
LIMA1-214ENST00000552783 CMC4P56277 68 aaPredicted RBP3.34□□□□□ -1.88
LIMA1-214ENST00000552783 KRTAP4-6Q9BYQ5 205 aa3.34□□□□□ -1.88
LIMA1-214ENST00000552783 SNURFQ9Y675 71 aa3.34□□□□□ -1.88
LIMA1-214ENST00000552783 FSHBP01225 129 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 S100A7L2Q5SY68 101 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 LYPD5Q6UWN5 251 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 H7BZZ5 65 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 LINC00269Q8N2A0 174 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 WIPF1O43516 503 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 C6orf99Q4VX62 202 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 LINC00336Q6ZUF6 198 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 LINC00167Q96N53 147 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 OVOL2Q9BRP0 275 aa3.33□□□□□ -1.88
LIMA1-214ENST00000552783 MGAM2Q2M2H8 2515 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 INAFM1C9JVW0 142 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 RMI2Q96E14 147 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 STAB1Q9NY15 2570 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 HIVEP1P15822 2718 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 SCXQ7RTU7 201 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 TENM4Q6N022 2769 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 TENM1Q9UKZ4 2725 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 IGLV1-51P01701 117 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 LINC00474Q9P2X8 69 aa3.32□□□□□ -1.88
LIMA1-214ENST00000552783 FP248Q71RG6 208 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-214ENST00000552783 PRO0255Q9UI72 69 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 KLK12Q9UKR0 248 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 LINC01547P58512 204 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-214ENST00000552783 KIAA0087Q14695 138 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 C10orf25Q5T742 122 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 Q6ZQT0 140 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 C6orf223Q8N319 242 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 CSNK1G2-AS1Q8NCQ2 148 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 TMEM256-PLSCR3K7ERE1 68 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 HAMPP81172 84 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 C16orf95Q9H693 158 aa3.31□□□□□ -1.88
LIMA1-214ENST00000552783 FAM236DA0A1B0GTK5 79 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 FAM236CP0DP71 79 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 TM2D3Q9BRN9 247 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 LAMTOR3Q9UHA4 124 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 EPM2AB3EWF7 344 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 JMJD7-PLA2G4BH0Y9G9 81 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 Q6ZVQ6 151 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 UBL5Q9BZL1 73 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 NDUFC2O95298 119 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 LINC00575Q6W349 94 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 KRTAP1-3Q8IUG1 177 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 C19orf73Q9NVV2 129 aa3.3□□□□□ -1.88
LIMA1-214ENST00000552783 F8WEM9 126 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 REG3AQ06141 175 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 Q8N9L7 120 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 CHCHD10Q8WYQ3 142 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-214ENST00000552783 Q8IZM0 81 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 XAGE1AQ9HD64 81 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 COL6A5A8TX70 2615 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 IGHV4-28A0A0C4DH34 117 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 APOC4P55056 127 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 RBM3P98179 157 aaKnown RBP3.29□□□□□ -1.88
LIMA1-214ENST00000552783 C4orf48Q5BLP8 95 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 UNQ6190/PRO20217Q6UXQ8 127 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-214ENST00000552783 Q6ZQY7 126 aa3.29□□□□□ -1.88
LIMA1-214ENST00000552783 BAHCC1Q9P281 2608 aa3.28□□□□□ -1.88
LIMA1-214ENST00000552783 SPAG11BQ08648 103 aa3.28□□□□□ -1.88
LIMA1-214ENST00000552783 FAM229BQ4G0N7 80 aa3.28□□□□□ -1.88
LIMA1-214ENST00000552783 HIGD2BQ4VC39 106 aa3.28□□□□□ -1.88
LIMA1-214ENST00000552783 C9orf66Q5T8R8 295 aa3.28□□□□□ -1.88
LIMA1-214ENST00000552783 OTOGQ6ZRI0 2925 aa3.28□□□□□ -1.88
LIMA1-214ENST00000552783 TRAV7A0A075B6U4 112 aa3.28□□□□□ -1.88
LIMA1-214ENST00000552783 LCE2AQ5TA79 106 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-214ENST00000552783 ATP5EP2Q5VTU8 51 aa3.28□□□□□ -1.88
LIMA1-214ENST00000552783 NSD1Q96L73 2696 aaPredicted RBP3.28□□□□□ -1.89
LIMA1-214ENST00000552783 CSMD3Q7Z407 3707 aa3.27□□□□□ -1.89
LIMA1-214ENST00000552783 ZNF561-AS1K7EIQ3 104 aa3.27□□□□□ -1.89
LIMA1-214ENST00000552783 SPART-AS1P0CW21 52 aa3.27□□□□□ -1.89
LIMA1-214ENST00000552783 KLKP1Q107X0 134 aa3.27□□□□□ -1.89
LIMA1-214ENST00000552783 TRBV10-3A0A0K0K1G6 114 aa3.27□□□□□ -1.89
LIMA1-214ENST00000552783 NDUFC2-KCTD14E9PQ53 114 aa3.27□□□□□ -1.89
LIMA1-214ENST00000552783 SERP1Q9Y6X1 66 aa3.27□□□□□ -1.89
LIMA1-214ENST00000552783 ANK2Q01484 3957 aa3.27□□□□□ -1.89
LIMA1-214ENST00000552783 LOC110117498A0A087WWA1 95 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 RETNQ9HD89 108 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 CELA1Q9UNI1 258 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 PKIGQ9Y2B9 76 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 TRBV7-4A0A0J9YYF1 115 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 MUC7Q8TAX7 377 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 IGKV2D-24A0A075B6R9 120 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 A0A1B0GUV1 79 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 MRAPQ8TCY5 172 aa3.26□□□□□ -1.89
LIMA1-214ENST00000552783 TRBV7-6A0A0J9YX20 115 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 CD164L2Q6UWJ8 174 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 CAMK2N2Q96S95 79 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 X6R8D5 127 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 CYSRT1A8MQ03 144 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 IGLV6-57P01721 117 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 PRB2P02812 416 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-214ENST00000552783 IGHV4-30-4P0DP06 118 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 KRTAP10-3P60369 221 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 KRTAP1-1Q07627 177 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 LYRM9A8MSI8 78 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms