RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 C9orf66Q5T8R8 295 aa9.65□□□□□ -0.86
SRP54-202ENST00000546080 LINC01006Q8NI28 216 aa9.65□□□□□ -0.86
SRP54-202ENST00000546080 MUC7Q8TAX7 377 aa9.65□□□□□ -0.86
SRP54-202ENST00000546080 PTPN13Q12923 2485 aa9.65□□□□□ -0.87
SRP54-202ENST00000546080 POLQO75417 2590 aa9.65□□□□□ -0.87
SRP54-202ENST00000546080 IGLV6-57P01721 117 aa9.64□□□□□ -0.87
SRP54-202ENST00000546080 SPAG11BQ08648 103 aa9.64□□□□□ -0.87
SRP54-202ENST00000546080 C10orf25Q5T742 122 aa9.64□□□□□ -0.87
SRP54-202ENST00000546080 UNQ6190/PRO20217Q6UXQ8 127 aa9.64□□□□□ -0.87
SRP54-202ENST00000546080 SNURFQ9Y675 71 aa9.64□□□□□ -0.87
SRP54-202ENST00000546080 EPM2AB3EWF7 344 aa9.64□□□□□ -0.87
SRP54-202ENST00000546080 TEX15Q9BXT5 2789 aa9.64□□□□□ -0.87
SRP54-202ENST00000546080 SETXQ7Z333 2677 aaKnown RBP9.63□□□□□ -0.87
SRP54-202ENST00000546080 SPATA3Q8NHX4 192 aa9.63□□□□□ -0.87
SRP54-202ENST00000546080 RMI2Q96E14 147 aa9.63□□□□□ -0.87
SRP54-202ENST00000546080 X6R8D5 127 aa9.62□□□□□ -0.87
SRP54-202ENST00000546080 ABCA12Q86UK0 2595 aa9.61□□□□□ -0.87
SRP54-202ENST00000546080 F8WEM9 126 aa9.61□□□□□ -0.87
SRP54-202ENST00000546080 DIRC1Q969H9 104 aa9.61□□□□□ -0.87
SRP54-202ENST00000546080 HECTD1Q9ULT8 2610 aa9.61□□□□□ -0.87
SRP54-202ENST00000546080 CYSRT1A8MQ03 144 aa9.6□□□□□ -0.87
SRP54-202ENST00000546080 KRTAP1-3Q8IUG1 177 aa9.6□□□□□ -0.87
SRP54-202ENST00000546080 TLN2Q9Y4G6 2542 aa9.6□□□□□ -0.87
SRP54-202ENST00000546080 A0A0J9YWU9 116 aa9.6□□□□□ -0.87
SRP54-202ENST00000546080 IGHV4-30-4P0DP06 118 aa9.6□□□□□ -0.87
SRP54-202ENST00000546080 JMJD1CQ15652 2540 aa9.59□□□□□ -0.87
SRP54-202ENST00000546080 SCXQ7RTU7 201 aa9.59□□□□□ -0.87
SRP54-202ENST00000546080 C16orf95Q9H693 158 aa9.59□□□□□ -0.87
SRP54-202ENST00000546080 APCP25054 2843 aa9.58□□□□□ -0.88
SRP54-202ENST00000546080 TRBV7-4A0A0J9YYF1 115 aa9.58□□□□□ -0.88
SRP54-202ENST00000546080 LYRM9A8MSI8 78 aa9.58□□□□□ -0.88
SRP54-202ENST00000546080 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.58□□□□□ -0.88
SRP54-202ENST00000546080 ITPR2Q14571 2701 aa9.58□□□□□ -0.88
SRP54-202ENST00000546080 NDUFC1O43677 76 aa9.57□□□□□ -0.88
SRP54-202ENST00000546080 COX7BP24311 80 aa9.57□□□□□ -0.88
SRP54-202ENST00000546080 MRAPQ8TCY5 172 aa9.57□□□□□ -0.88
SRP54-202ENST00000546080 TM2D3Q9BRN9 247 aa9.57□□□□□ -0.88
SRP54-202ENST00000546080 UNC79Q9P2D8 2635 aa9.56□□□□□ -0.88
SRP54-202ENST00000546080 NIPBLQ6KC79 2804 aaeCLIP9.56□□□□□ -0.88
SRP54-202ENST00000546080 ZNF73O43830 326 aaPredicted RBP9.56□□□□□ -0.88
SRP54-202ENST00000546080 ZNF469Q96JG9 3925 aaPredicted RBP9.55□□□□□ -0.88
SRP54-202ENST00000546080 SMIM26A0A096LP01 95 aa9.55□□□□□ -0.88
SRP54-202ENST00000546080 DEFB4AO15263 64 aa9.55□□□□□ -0.88
SRP54-202ENST00000546080 XAGE1AQ9HD64 81 aa9.54□□□□□ -0.88
SRP54-202ENST00000546080 FLNBO75369 2602 aaKnown RBP9.54□□□□□ -0.88
SRP54-202ENST00000546080 GVQW2A0A096LPI5 108 aaPredicted RBP9.54□□□□□ -0.88
SRP54-202ENST00000546080 WFDC11Q8NEX6 87 aa9.54□□□□□ -0.88
SRP54-202ENST00000546080 ELOF1P60002 83 aaKnown RBP9.53□□□□□ -0.88
SRP54-202ENST00000546080 DAD1P61803 113 aa9.53□□□□□ -0.88
SRP54-202ENST00000546080 NREPQ16612 68 aa9.53□□□□□ -0.88
SRP54-202ENST00000546080 MIFP14174 115 aa9.53□□□□□ -0.88
SRP54-202ENST00000546080 ATP5EP56381 51 aaPredicted RBP9.53□□□□□ -0.88
SRP54-202ENST00000546080 C6orf48Q9UBA6 75 aa9.53□□□□□ -0.88
SRP54-202ENST00000546080 NAV2Q8IVL1 2488 aa9.52□□□□□ -0.89
SRP54-202ENST00000546080 KLK12Q9UKR0 248 aa9.52□□□□□ -0.89
SRP54-202ENST00000546080 TRBV7-6A0A0J9YX20 115 aa9.51□□□□□ -0.89
SRP54-202ENST00000546080 BPY2O14599 106 aa9.51□□□□□ -0.89
SRP54-202ENST00000546080 LELP1Q5T871 98 aa9.51□□□□□ -0.89
SRP54-202ENST00000546080 LINC00336Q6ZUF6 198 aa9.51□□□□□ -0.89
SRP54-202ENST00000546080 FP248Q71RG6 208 aaPredicted RBP9.51□□□□□ -0.89
SRP54-202ENST00000546080 DEFB135Q30KP9 77 aa9.5□□□□□ -0.89
SRP54-202ENST00000546080 PRO0628Q9UI54 55 aa9.5□□□□□ -0.89
SRP54-202ENST00000546080 PRR34Q9NV39 138 aa9.5□□□□□ -0.89
SRP54-202ENST00000546080 TMEM254Q8TBM7 123 aa9.49□□□□□ -0.89
SRP54-202ENST00000546080 NF1P21359 2839 aa9.49□□□□□ -0.89
SRP54-202ENST00000546080 HTN3P15516 51 aa9.48□□□□□ -0.89
SRP54-202ENST00000546080 NOTCH2Q04721 2471 aa9.48□□□□□ -0.89
SRP54-202ENST00000546080 ERC2-IT1O76042 136 aa9.47□□□□□ -0.89
SRP54-202ENST00000546080 SONP18583 2426 aaKnown RBP9.47□□□□□ -0.89
SRP54-202ENST00000546080 CELA1Q9UNI1 258 aa9.47□□□□□ -0.89
SRP54-202ENST00000546080 VPREB1P12018 145 aa9.46□□□□□ -0.89
SRP54-202ENST00000546080 Q8N9L7 120 aa9.46□□□□□ -0.89
SRP54-202ENST00000546080 FN1P02751 2386 aaKnown RBP9.45□□□□□ -0.9
SRP54-202ENST00000546080 M0R378 163 aa9.45□□□□□ -0.9
SRP54-202ENST00000546080 IGKV4-1P06312 121 aa9.45□□□□□ -0.9
SRP54-202ENST00000546080 LINC00474Q9P2X8 69 aa9.45□□□□□ -0.9
SRP54-202ENST00000546080 CCDC168Q8NDH2 2452 aa9.45□□□□□ -0.9
SRP54-202ENST00000546080 CAMK2N2Q96S95 79 aa9.44□□□□□ -0.9
SRP54-202ENST00000546080 PDZD2O15018 2839 aa9.44□□□□□ -0.9
SRP54-202ENST00000546080 HIGD2BQ4VC39 106 aa9.44□□□□□ -0.9
SRP54-202ENST00000546080 LINC00528Q8N1L1 170 aa9.44□□□□□ -0.9
SRP54-202ENST00000546080 APOC4P55056 127 aa9.43□□□□□ -0.9
SRP54-202ENST00000546080 PRYO14603 147 aa9.42□□□□□ -0.9
SRP54-202ENST00000546080 KRTAP1-1Q07627 177 aa9.42□□□□□ -0.9
SRP54-202ENST00000546080 ITPR3Q14573 2671 aa9.42□□□□□ -0.9
SRP54-202ENST00000546080 KRTAP10-3P60369 221 aa9.41□□□□□ -0.9
SRP54-202ENST00000546080 SPART-AS1P0CW21 52 aa9.41□□□□□ -0.9
SRP54-202ENST00000546080 EGFEM1PQ0D2K5 195 aa9.41□□□□□ -0.9
SRP54-202ENST00000546080 Q8NAQ8 132 aa9.41□□□□□ -0.9
SRP54-202ENST00000546080 OCR1Q9BZK8 76 aa9.41□□□□□ -0.9
SRP54-202ENST00000546080 SETD2Q9BYW2 2564 aaPredicted RBP9.4□□□□□ -0.9
SRP54-202ENST00000546080 A0A0U1RQV1 116 aa9.4□□□□□ -0.91
SRP54-202ENST00000546080 C1orf43Q9BWL3 253 aa9.4□□□□□ -0.91
SRP54-202ENST00000546080 C3orf84H3BNL1 204 aa9.39□□□□□ -0.91
SRP54-202ENST00000546080 NBEAL2Q6ZNJ1 2754 aa9.39□□□□□ -0.91
SRP54-202ENST00000546080 Q6ZRU5 148 aa9.39□□□□□ -0.91
SRP54-202ENST00000546080 FUSP35637 526 aaKnown RBP eCLIP9.38□□□□□ -0.91
SRP54-202ENST00000546080 FAM229BQ4G0N7 80 aa9.37□□□□□ -0.91
SRP54-202ENST00000546080 DEFB105AQ8NG35 78 aa9.35□□□□□ -0.91
SRP54-202ENST00000546080 MPLKIPQ8TAP9 179 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms