RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 CDK2AP2O75956 126 aa7.35□□□□□ -1.23
YBX3-213ENST00000542641 XGP55808 180 aa7.35□□□□□ -1.23
YBX3-213ENST00000542641 SCGB1D4Q6XE38 83 aa7.35□□□□□ -1.23
YBX3-213ENST00000542641 MIR7-3HGQ8N6C7 128 aa7.35□□□□□ -1.23
YBX3-213ENST00000542641 CIRBP-AS1Q8TBR5 109 aa7.35□□□□□ -1.23
YBX3-213ENST00000542641 SND1-IT1Q9HBX3 110 aa7.35□□□□□ -1.23
YBX3-213ENST00000542641 FAM168BA1KXE4 195 aa7.34□□□□□ -1.23
YBX3-213ENST00000542641 DAND5Q8N907 189 aa7.34□□□□□ -1.23
YBX3-213ENST00000542641 APOBP04114 4563 aaKnown RBP7.33□□□□□ -1.24
YBX3-213ENST00000542641 A0A1W2PNN7 141 aa7.33□□□□□ -1.24
YBX3-213ENST00000542641 TIMM17BO60830 172 aa7.33□□□□□ -1.24
YBX3-213ENST00000542641 COX8AP10176 69 aa7.33□□□□□ -1.24
YBX3-213ENST00000542641 S100A12P80511 92 aa7.33□□□□□ -1.24
YBX3-213ENST00000542641 ADAMTSL4-AS1Q5T5F5 129 aa7.33□□□□□ -1.24
YBX3-213ENST00000542641 C14orf144Q96I85 54 aa7.33□□□□□ -1.24
YBX3-213ENST00000542641 PLAC8Q9NZF1 115 aa7.33□□□□□ -1.24
YBX3-213ENST00000542641 FAM19A5Q7Z5A7 132 aaPredicted RBP7.32□□□□□ -1.24
YBX3-213ENST00000542641 BOD1L2Q8IYS8 172 aa7.32□□□□□ -1.24
YBX3-213ENST00000542641 TMEM238C9JI98 176 aa7.31□□□□□ -1.24
YBX3-213ENST00000542641 SERTAD4-AS1Q5TG53 156 aa7.31□□□□□ -1.24
YBX3-213ENST00000542641 LITAFQ99732 161 aa7.31□□□□□ -1.24
YBX3-213ENST00000542641 BIRC6Q9NR09 4857 aa7.31□□□□□ -1.24
YBX3-213ENST00000542641 EPM2AB3EWF7 344 aa7.3□□□□□ -1.24
YBX3-213ENST00000542641 DLEU1O43261 78 aa7.3□□□□□ -1.24
YBX3-213ENST00000542641 SMIM6P0DI80 62 aa7.3□□□□□ -1.24
YBX3-213ENST00000542641 NPC2P61916 151 aa7.3□□□□□ -1.24
YBX3-213ENST00000542641 MIEN1Q9BRT3 115 aa7.3□□□□□ -1.24
YBX3-213ENST00000542641 PLA2G2DQ9UNK4 145 aa7.3□□□□□ -1.24
YBX3-213ENST00000542641 SMR3BP02814 79 aaPredicted RBP7.29□□□□□ -1.24
YBX3-213ENST00000542641 RPL24P83731 157 aaKnown RBP7.29□□□□□ -1.24
YBX3-213ENST00000542641 SLC25A34Q6PIV7 304 aa7.29□□□□□ -1.24
YBX3-213ENST00000542641 KRTAP7-1Q8IUC3 87 aa7.29□□□□□ -1.24
YBX3-213ENST00000542641 TP73-AS1Q9UF72 201 aa7.29□□□□□ -1.24
YBX3-213ENST00000542641 LOC107984156A0A0G2JMH3 177 aa7.28□□□□□ -1.24
YBX3-213ENST00000542641 M0QXV9 152 aa7.28□□□□□ -1.24
YBX3-213ENST00000542641 PHF5AQ7RTV0 110 aaKnown RBP7.28□□□□□ -1.24
YBX3-213ENST00000542641 ARL17AQ8IVW1 177 aa7.28□□□□□ -1.24
YBX3-213ENST00000542641 LINC00308Q8TCZ7 52 aa7.28□□□□□ -1.24
YBX3-213ENST00000542641 SPANXDQ9BXN6 97 aa7.28□□□□□ -1.24
YBX3-213ENST00000542641 SPANXCQ9NY87 97 aa7.28□□□□□ -1.24
YBX3-213ENST00000542641 C22orf24Q9Y442 160 aa7.28□□□□□ -1.24
YBX3-213ENST00000542641 HSPG2P98160 4391 aa7.27□□□□□ -1.25
YBX3-213ENST00000542641 VPREB1P12018 145 aa7.27□□□□□ -1.25
YBX3-213ENST00000542641 SRSF9Q13242 221 aaKnown RBP eCLIP7.27□□□□□ -1.25
YBX3-213ENST00000542641 Q6ZVH6 145 aa7.27□□□□□ -1.25
YBX3-213ENST00000542641 NKAPP1Q8N9T2 125 aa7.27□□□□□ -1.25
YBX3-213ENST00000542641 KIAA1109Q2LD37 5005 aa7.26□□□□□ -1.25
YBX3-213ENST00000542641 RYR1P21817 5038 aa7.26□□□□□ -1.25
YBX3-213ENST00000542641 IGLV5-37A0A075B6J1 123 aa7.26□□□□□ -1.25
YBX3-213ENST00000542641 LBHQ53QV2 105 aaPredicted RBP7.26□□□□□ -1.25
YBX3-213ENST00000542641 SOSTDC1Q6X4U4 206 aa7.26□□□□□ -1.25
YBX3-213ENST00000542641 Q8NDZ9 215 aa7.26□□□□□ -1.25
YBX3-213ENST00000542641 C7orf33Q8WU49 177 aa7.26□□□□□ -1.25
YBX3-213ENST00000542641 SPANXB1Q9NS25 103 aaPredicted RBP7.26□□□□□ -1.25
YBX3-213ENST00000542641 IFITM1P13164 125 aa7.25□□□□□ -1.25
YBX3-213ENST00000542641 PRR3P79522 188 aaKnown RBP7.25□□□□□ -1.25
YBX3-213ENST00000542641 MRPL55Q7Z7F7 128 aaKnown RBP7.25□□□□□ -1.25
YBX3-213ENST00000542641 COPS9Q8WXC6 57 aa7.25□□□□□ -1.25
YBX3-213ENST00000542641 GAGE10A6NGK3 116 aa7.24□□□□□ -1.25
YBX3-213ENST00000542641 NDUFC2O95298 119 aa7.24□□□□□ -1.25
YBX3-213ENST00000542641 UBE2BP63146 152 aa7.24□□□□□ -1.25
YBX3-213ENST00000542641 MUSTN1Q8IVN3 82 aa7.24□□□□□ -1.25
YBX3-213ENST00000542641 HIST1H4GQ99525 98 aa7.24□□□□□ -1.25
YBX3-213ENST00000542641 HIGD1BQ9P298 99 aa7.24□□□□□ -1.25
YBX3-213ENST00000542641 M0R378 163 aa7.23□□□□□ -1.25
YBX3-213ENST00000542641 NCR3O14931 201 aa7.23□□□□□ -1.25
YBX3-213ENST00000542641 C2orf91Q6ZV80 131 aa7.23□□□□□ -1.25
YBX3-213ENST00000542641 LINC00167Q96N53 147 aa7.23□□□□□ -1.25
YBX3-213ENST00000542641 C12orf57Q99622 126 aa7.23□□□□□ -1.25
YBX3-213ENST00000542641 UQCR10Q9UDW1 63 aa7.23□□□□□ -1.25
YBX3-213ENST00000542641 RPL37AP8A6NKH3 93 aa7.22□□□□□ -1.25
YBX3-213ENST00000542641 PPDPFQ9H3Y8 114 aa7.22□□□□□ -1.25
YBX3-213ENST00000542641 TRBV10-2A0A0K0K1G8 114 aa7.21□□□□□ -1.26
YBX3-213ENST00000542641 Q8N1X5 172 aa7.21□□□□□ -1.26
YBX3-213ENST00000542641 PRO1933Q9H354 126 aa7.21□□□□□ -1.26
YBX3-213ENST00000542641 IGKV2-28A0A075B6P5 120 aa7.2□□□□□ -1.26
YBX3-213ENST00000542641 IGKV2D-28P01615 120 aa7.2□□□□□ -1.26
YBX3-213ENST00000542641 RPL37AP61513 92 aaKnown RBP7.2□□□□□ -1.26
YBX3-213ENST00000542641 KRTAP11-1Q8IUC1 163 aa7.2□□□□□ -1.26
YBX3-213ENST00000542641 KRTAP4-8Q9BYQ9 185 aa7.2□□□□□ -1.26
YBX3-213ENST00000542641 FAT1Q14517 4588 aa7.19□□□□□ -1.26
YBX3-213ENST00000542641 IGLV1-50A0A075B6I6 118 aa7.19□□□□□ -1.26
YBX3-213ENST00000542641 PLA2G1BP04054 148 aaKnown RBP7.19□□□□□ -1.26
YBX3-213ENST00000542641 S100A7L2Q5SY68 101 aa7.19□□□□□ -1.26
YBX3-213ENST00000542641 Q5VSD8 79 aa7.19□□□□□ -1.26
YBX3-213ENST00000542641 LINC00518Q8N0U6 118 aa7.19□□□□□ -1.26
YBX3-213ENST00000542641 KRTAP17-1Q9BYP8 105 aa7.19□□□□□ -1.26
YBX3-213ENST00000542641 PSORS1C2Q9UIG4 136 aa7.19□□□□□ -1.26
YBX3-213ENST00000542641 VPS13BQ7Z7G8 4022 aa7.17□□□□□ -1.26
YBX3-213ENST00000542641 TRBV10-3A0A0K0K1G6 114 aa7.17□□□□□ -1.26
YBX3-213ENST00000542641 A4D1N5 150 aa7.17□□□□□ -1.26
YBX3-213ENST00000542641 TSTD3H0UI37 97 aa7.17□□□□□ -1.26
YBX3-213ENST00000542641 DDTP30046 118 aa7.17□□□□□ -1.26
YBX3-213ENST00000542641 HNRNPA3P51991 378 aaKnown RBP7.17□□□□□ -1.26
YBX3-213ENST00000542641 TAL2Q16559 108 aa7.17□□□□□ -1.26
YBX3-213ENST00000542641 C1orf137Q5JT78 98 aa7.17□□□□□ -1.26
YBX3-213ENST00000542641 OR13C6PQ8NH95 151 aa7.17□□□□□ -1.26
YBX3-213ENST00000542641 IGLV6-57P01721 117 aa7.16□□□□□ -1.26
YBX3-213ENST00000542641 CEND1Q8N111 149 aa7.16□□□□□ -1.26
YBX3-213ENST00000542641 LINC00337Q8N6G1 96 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms