RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 A0A0J9YXY3 114 aa10.84□□□□□ -0.67
LIG1-204ENST00000542460 A0A0U1RRA0 63 aa10.84□□□□□ -0.67
LIG1-204ENST00000542460 C9orf129Q5T035 196 aaKnown RBP10.84□□□□□ -0.67
LIG1-204ENST00000542460 PLAC8Q9NZF1 115 aa10.84□□□□□ -0.67
LIG1-204ENST00000542460 HSPG2P98160 4391 aa10.84□□□□□ -0.67
LIG1-204ENST00000542460 M0R143 59 aa10.83□□□□□ -0.68
LIG1-204ENST00000542460 PCP2Q8IVA1 136 aa10.83□□□□□ -0.68
LIG1-204ENST00000542460 A0A1W2PNN7 141 aa10.82□□□□□ -0.68
LIG1-204ENST00000542460 SND1-IT1Q9HBX3 110 aa10.82□□□□□ -0.68
LIG1-204ENST00000542460 MIR7-3HGQ8N6C7 128 aa10.81□□□□□ -0.68
LIG1-204ENST00000542460 APOBP04114 4563 aaKnown RBP10.81□□□□□ -0.68
LIG1-204ENST00000542460 FAM168BA1KXE4 195 aa10.8□□□□□ -0.68
LIG1-204ENST00000542460 EPM2AB3EWF7 344 aa10.8□□□□□ -0.68
LIG1-204ENST00000542460 SLC25A34Q6PIV7 304 aa10.8□□□□□ -0.68
LIG1-204ENST00000542460 SCGB1D4Q6XE38 83 aa10.79□□□□□ -0.68
LIG1-204ENST00000542460 SNHG12Q9BXW3 62 aa10.79□□□□□ -0.68
LIG1-204ENST00000542460 TIMM17BO60830 172 aa10.79□□□□□ -0.68
LIG1-204ENST00000542460 BATFQ16520 125 aa10.78□□□□□ -0.68
LIG1-204ENST00000542460 FAM19A5Q7Z5A7 132 aaPredicted RBP10.78□□□□□ -0.68
LIG1-204ENST00000542460 PLA2G2DQ9UNK4 145 aa10.78□□□□□ -0.68
LIG1-204ENST00000542460 ADAMTSL4-AS1Q5T5F5 129 aa10.77□□□□□ -0.69
LIG1-204ENST00000542460 DAND5Q8N907 189 aa10.77□□□□□ -0.69
LIG1-204ENST00000542460 SMR3BP02814 79 aaPredicted RBP10.76□□□□□ -0.69
LIG1-204ENST00000542460 SERTAD4-AS1Q5TG53 156 aa10.76□□□□□ -0.69
LIG1-204ENST00000542460 KRTAP7-1Q8IUC3 87 aa10.76□□□□□ -0.69
LIG1-204ENST00000542460 LITAFQ99732 161 aa10.76□□□□□ -0.69
LIG1-204ENST00000542460 COX8AP10176 69 aa10.75□□□□□ -0.69
LIG1-204ENST00000542460 TP73-AS1Q9UF72 201 aa10.75□□□□□ -0.69
LIG1-204ENST00000542460 LOC107984156A0A0G2JMH3 177 aa10.74□□□□□ -0.69
LIG1-204ENST00000542460 TMEM238C9JI98 176 aa10.74□□□□□ -0.69
LIG1-204ENST00000542460 RPL24P83731 157 aaKnown RBP10.74□□□□□ -0.69
LIG1-204ENST00000542460 ARL17AQ8IVW1 177 aa10.74□□□□□ -0.69
LIG1-204ENST00000542460 BOD1L2Q8IYS8 172 aa10.74□□□□□ -0.69
LIG1-204ENST00000542460 KRTAP4-5Q9BYR2 181 aa10.74□□□□□ -0.69
LIG1-204ENST00000542460 M0QXV9 152 aa10.74□□□□□ -0.69
LIG1-204ENST00000542460 C22orf24Q9Y442 160 aa10.74□□□□□ -0.69
LIG1-204ENST00000542460 DLEU1O43261 78 aa10.73□□□□□ -0.69
LIG1-204ENST00000542460 IGLV5-37A0A075B6J1 123 aa10.72□□□□□ -0.69
LIG1-204ENST00000542460 PHF5AQ7RTV0 110 aaKnown RBP10.72□□□□□ -0.69
LIG1-204ENST00000542460 LINC00528Q8N1L1 170 aa10.72□□□□□ -0.69
LIG1-204ENST00000542460 C7orf33Q8WU49 177 aa10.72□□□□□ -0.69
LIG1-204ENST00000542460 VPREB1P12018 145 aa10.71□□□□□ -0.69
LIG1-204ENST00000542460 NKAPP1Q8N9T2 125 aa10.71□□□□□ -0.69
LIG1-204ENST00000542460 A0A1B0GV90 55 aa10.7□□□□□ -0.7
LIG1-204ENST00000542460 HINT1P49773 126 aaPredicted RBP10.7□□□□□ -0.7
LIG1-204ENST00000542460 Q6ZVH6 145 aa10.7□□□□□ -0.7
LIG1-204ENST00000542460 Q8N1X5 172 aa10.7□□□□□ -0.7
LIG1-204ENST00000542460 SPANXDQ9BXN6 97 aa10.7□□□□□ -0.7
LIG1-204ENST00000542460 SPANXCQ9NY87 97 aa10.7□□□□□ -0.7
LIG1-204ENST00000542460 FAM229AH3BQW9 127 aa10.69□□□□□ -0.7
LIG1-204ENST00000542460 NPC2P61916 151 aa10.69□□□□□ -0.7
LIG1-204ENST00000542460 MRPL55Q7Z7F7 128 aaKnown RBP10.69□□□□□ -0.7
LIG1-204ENST00000542460 Q8NDZ9 215 aa10.69□□□□□ -0.7
LIG1-204ENST00000542460 LINC00308Q8TCZ7 52 aa10.69□□□□□ -0.7
LIG1-204ENST00000542460 COL5A1-AS1Q5SY13 56 aa10.68□□□□□ -0.7
LIG1-204ENST00000542460 SOSTDC1Q6X4U4 206 aa10.68□□□□□ -0.7
LIG1-204ENST00000542460 EIF4EBP3O60516 100 aaPredicted RBP10.68□□□□□ -0.7
LIG1-204ENST00000542460 COPS9Q8WXC6 57 aa10.68□□□□□ -0.7
LIG1-204ENST00000542460 IFITM1P13164 125 aa10.67□□□□□ -0.7
LIG1-204ENST00000542460 C2orf91Q6ZV80 131 aa10.67□□□□□ -0.7
LIG1-204ENST00000542460 SPANXB1Q9NS25 103 aaPredicted RBP10.67□□□□□ -0.7
LIG1-204ENST00000542460 NDUFC2O95298 119 aa10.66□□□□□ -0.7
LIG1-204ENST00000542460 UBE2BP63146 152 aa10.66□□□□□ -0.7
LIG1-204ENST00000542460 SRSF9Q13242 221 aaKnown RBP eCLIP10.66□□□□□ -0.7
LIG1-204ENST00000542460 LINC00167Q96N53 147 aa10.66□□□□□ -0.7
LIG1-204ENST00000542460 PRR3P79522 188 aaKnown RBP10.65□□□□□ -0.7
LIG1-204ENST00000542460 GAGE10A6NGK3 116 aa10.64□□□□□ -0.71
LIG1-204ENST00000542460 M0R378 163 aa10.64□□□□□ -0.71
LIG1-204ENST00000542460 PLA2G1BP04054 148 aaKnown RBP10.64□□□□□ -0.71
LIG1-204ENST00000542460 Q5VSD8 79 aa10.64□□□□□ -0.71
LIG1-204ENST00000542460 PPDPFQ9H3Y8 114 aa10.64□□□□□ -0.71
LIG1-204ENST00000542460 RPL37AP61513 92 aaKnown RBP10.63□□□□□ -0.71
LIG1-204ENST00000542460 MUSTN1Q8IVN3 82 aa10.63□□□□□ -0.71
LIG1-204ENST00000542460 HIGD1BQ9P298 99 aa10.63□□□□□ -0.71
LIG1-204ENST00000542460 TRBV10-2A0A0K0K1G8 114 aa10.63□□□□□ -0.71
LIG1-204ENST00000542460 NCR3O14931 201 aa10.63□□□□□ -0.71
LIG1-204ENST00000542460 RPL37AP8A6NKH3 93 aa10.62□□□□□ -0.71
LIG1-204ENST00000542460 BVES-AS1Q5T3Y7 98 aa10.62□□□□□ -0.71
LIG1-204ENST00000542460 KRTAP11-1Q8IUC1 163 aa10.62□□□□□ -0.71
LIG1-204ENST00000542460 HSD52Q0P140 79 aa10.61□□□□□ -0.71
LIG1-204ENST00000542460 HIST1H4GQ99525 98 aa10.61□□□□□ -0.71
LIG1-204ENST00000542460 PSORS1C2Q9UIG4 136 aa10.61□□□□□ -0.71
LIG1-204ENST00000542460 IGLV1-50A0A075B6I6 118 aa10.6□□□□□ -0.71
LIG1-204ENST00000542460 FAT1Q14517 4588 aa10.59□□□□□ -0.71
LIG1-204ENST00000542460 IGKV2-28A0A075B6P5 120 aa10.59□□□□□ -0.71
LIG1-204ENST00000542460 IGKV2D-28P01615 120 aa10.59□□□□□ -0.71
LIG1-204ENST00000542460 KRTAP10-4P60372 401 aaPredicted RBP10.58□□□□□ -0.72
LIG1-204ENST00000542460 C1orf137Q5JT78 98 aa10.58□□□□□ -0.72
LIG1-204ENST00000542460 VPS13BQ7Z7G8 4022 aa10.57□□□□□ -0.72
LIG1-204ENST00000542460 TRBV10-3A0A0K0K1G6 114 aa10.56□□□□□ -0.72
LIG1-204ENST00000542460 S100A7L2Q5SY68 101 aa10.56□□□□□ -0.72
LIG1-204ENST00000542460 TAL2Q16559 108 aa10.55□□□□□ -0.72
LIG1-204ENST00000542460 IGLV6-57P01721 117 aa10.54□□□□□ -0.72
LIG1-204ENST00000542460 A6NDN8 102 aa10.53□□□□□ -0.72
LIG1-204ENST00000542460 KCNQ1DNQ9H478 68 aa10.53□□□□□ -0.72
LIG1-204ENST00000542460 A4D1N5 150 aa10.53□□□□□ -0.72
LIG1-204ENST00000542460 REG3GQ6UW15 175 aa10.53□□□□□ -0.72
LIG1-204ENST00000542460 OR13C6PQ8NH95 151 aa10.53□□□□□ -0.72
LIG1-204ENST00000542460 TMEM126AQ9H061 195 aa10.53□□□□□ -0.72
LIG1-204ENST00000542460 SRRM2Q9UQ35 2752 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms