RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CST9LQ9H4G1 147 aa8.31□□□□□ -1.08
SNHG1-213ENST00000540725 LINC01546A6NGU7 62 aa8.3□□□□□ -1.08
SNHG1-213ENST00000540725 CTAG1AP78358 180 aa8.3□□□□□ -1.08
SNHG1-213ENST00000540725 NKAPP1Q8N9T2 125 aa8.3□□□□□ -1.08
SNHG1-213ENST00000540725 MRPL18Q9H0U6 180 aaKnown RBP8.3□□□□□ -1.08
SNHG1-213ENST00000540725 ANAPC11Q9NYG5 84 aa8.3□□□□□ -1.08
SNHG1-213ENST00000540725 UBE2AP49459 152 aa8.29□□□□□ -1.08
SNHG1-213ENST00000540725 PMVKQ15126 192 aa8.29□□□□□ -1.08
SNHG1-213ENST00000540725 KRTAP13-1Q8IUC0 172 aa8.29□□□□□ -1.08
SNHG1-213ENST00000540725 H3BRM9 83 aa8.27□□□□□ -1.09
SNHG1-213ENST00000540725 ATP5LO75964 103 aa8.27□□□□□ -1.09
SNHG1-213ENST00000540725 KRTAP13-2Q52LG2 175 aa8.27□□□□□ -1.09
SNHG1-213ENST00000540725 FA2HQ7L5A8 372 aa8.27□□□□□ -1.09
SNHG1-213ENST00000540725 IGKV2-28A0A075B6P5 120 aa8.26□□□□□ -1.09
SNHG1-213ENST00000540725 IGKV2D-28P01615 120 aa8.26□□□□□ -1.09
SNHG1-213ENST00000540725 A0A0U1RQV1 116 aa8.25□□□□□ -1.09
SNHG1-213ENST00000540725 FAM229BQ4G0N7 80 aa8.25□□□□□ -1.09
SNHG1-213ENST00000540725 IGLV5-39A0A0G2JS06 123 aa8.24□□□□□ -1.09
SNHG1-213ENST00000540725 PFN2P35080 140 aa8.24□□□□□ -1.09
SNHG1-213ENST00000540725 IGLC3P0DOY3 106 aa8.23□□□□□ -1.09
SNHG1-213ENST00000540725 LINC00587B1AMM8 73 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 TSTD3H0UI37 97 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 VPREB1P12018 145 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 ZNF22P17026 224 aaPredicted RBP8.22□□□□□ -1.09
SNHG1-213ENST00000540725 PRLHP81277 87 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 LINC00304Q8N9R0 145 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 RETNLBQ9BQ08 111 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 LINC00310P59036 64 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 BAGE3Q86Y29 109 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 TMEM126AQ9H061 195 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 SND1-IT1Q9HBX3 110 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 ERG28Q9UKR5 140 aa8.22□□□□□ -1.09
SNHG1-213ENST00000540725 A0A096LNJ9 63 aa8.21□□□□□ -1.1
SNHG1-213ENST00000540725 TMEM238C9JI98 176 aa8.21□□□□□ -1.1
SNHG1-213ENST00000540725 SERF1AO75920 110 aa8.21□□□□□ -1.1
SNHG1-213ENST00000540725 FAM19A1Q7Z5A9 133 aa8.21□□□□□ -1.1
SNHG1-213ENST00000540725 IGKV2D-26A0A0A0MRZ7 120 aa8.2□□□□□ -1.1
SNHG1-213ENST00000540725 FAT4Q6V0I7 4981 aa8.19□□□□□ -1.1
SNHG1-213ENST00000540725 RPL24P83731 157 aaKnown RBP8.19□□□□□ -1.1
SNHG1-213ENST00000540725 COX17Q14061 63 aa8.19□□□□□ -1.1
SNHG1-213ENST00000540725 ZNF625Q96I27 306 aaPredicted RBP8.19□□□□□ -1.1
SNHG1-213ENST00000540725 M0R378 163 aa8.18□□□□□ -1.1
SNHG1-213ENST00000540725 Q8NDZ9 215 aa8.18□□□□□ -1.1
SNHG1-213ENST00000540725 C18orf32Q8TCD1 76 aa8.18□□□□□ -1.1
SNHG1-213ENST00000540725 URB1-AS1Q96HZ7 61 aa8.18□□□□□ -1.1
SNHG1-213ENST00000540725 HBDP02042 147 aa8.17□□□□□ -1.1
SNHG1-213ENST00000540725 DDTP30046 118 aa8.17□□□□□ -1.1
SNHG1-213ENST00000540725 MUC17Q685J3 4493 aa8.17□□□□□ -1.1
SNHG1-213ENST00000540725 C11orf86A6NJI1 115 aa8.16□□□□□ -1.1
SNHG1-213ENST00000540725 LINC00614P0C842 121 aa8.16□□□□□ -1.1
SNHG1-213ENST00000540725 PMCHL1Q16048 86 aa8.16□□□□□ -1.1
SNHG1-213ENST00000540725 PLEKHB2Q96CS7 222 aa8.16□□□□□ -1.1
SNHG1-213ENST00000540725 SCGB1D1O95968 90 aa8.15□□□□□ -1.1
SNHG1-213ENST00000540725 TPRXLQ17RH7 258 aa8.15□□□□□ -1.1
SNHG1-213ENST00000540725 TMEM170BQ5T4T1 132 aa8.15□□□□□ -1.1
SNHG1-213ENST00000540725 SFTA2Q6UW10 78 aa8.15□□□□□ -1.1
SNHG1-213ENST00000540725 CHCHD1Q96BP2 118 aaKnown RBP8.15□□□□□ -1.1
SNHG1-213ENST00000540725 CDIP1Q9H305 208 aa8.15□□□□□ -1.1
SNHG1-213ENST00000540725 IGLV7-46A0A075B6I9 117 aa8.14□□□□□ -1.11
SNHG1-213ENST00000540725 C3orf22Q8N5N4 141 aa8.14□□□□□ -1.11
SNHG1-213ENST00000540725 HIGD2AQ9BW72 106 aa8.14□□□□□ -1.11
SNHG1-213ENST00000540725 HSBP1O75506 76 aa8.12□□□□□ -1.11
SNHG1-213ENST00000540725 LINC00158P58513 81 aa8.12□□□□□ -1.11
SNHG1-213ENST00000540725 LCE2AQ5TA79 106 aaPredicted RBP8.12□□□□□ -1.11
SNHG1-213ENST00000540725 C14orf144Q96I85 54 aa8.12□□□□□ -1.11
SNHG1-213ENST00000540725 SPRR4Q96PI1 79 aa8.1□□□□□ -1.11
SNHG1-213ENST00000540725 KRTAP9-2Q9BYQ4 174 aa8.1□□□□□ -1.11
SNHG1-213ENST00000540725 PRO1933Q9H354 126 aa8.1□□□□□ -1.11
SNHG1-213ENST00000540725 CHTOPQ9Y3Y2 248 aaKnown RBP8.1□□□□□ -1.11
SNHG1-213ENST00000540725 A0A0U1RRA0 63 aa8.1□□□□□ -1.11
SNHG1-213ENST00000540725 C20orf202A1L168 122 aa8.09□□□□□ -1.12
SNHG1-213ENST00000540725 C3orf79P0CE67 100 aa8.09□□□□□ -1.12
SNHG1-213ENST00000540725 SPAG11AQ6PDA7 123 aa8.09□□□□□ -1.12
SNHG1-213ENST00000540725 VAMP8Q9BV40 100 aa8.09□□□□□ -1.12
SNHG1-213ENST00000540725 PPDPFQ9H3Y8 114 aa8.09□□□□□ -1.12
SNHG1-213ENST00000540725 TMEM223A0PJW6 202 aa8.08□□□□□ -1.12
SNHG1-213ENST00000540725 KRTDAPP60985 99 aa8.08□□□□□ -1.12
SNHG1-213ENST00000540725 MIEN1Q9BRT3 115 aa8.08□□□□□ -1.12
SNHG1-213ENST00000540725 ZNF706Q9Y5V0 76 aaPredicted RBP8.08□□□□□ -1.12
SNHG1-213ENST00000540725 FAM19A2Q8N3H0 131 aa8.07□□□□□ -1.12
SNHG1-213ENST00000540725 PRYO14603 147 aa8.06□□□□□ -1.12
SNHG1-213ENST00000540725 SMIM13P0DJ93 91 aa8.06□□□□□ -1.12
SNHG1-213ENST00000540725 BOD1L2Q8IYS8 172 aa8.06□□□□□ -1.12
SNHG1-213ENST00000540725 TRAV12-1A0A0B4J245 112 aa8.05□□□□□ -1.12
SNHG1-213ENST00000540725 C4orf48Q5BLP8 95 aa8.05□□□□□ -1.12
SNHG1-213ENST00000540725 IFI27L1Q96BM0 104 aa8.05□□□□□ -1.12
SNHG1-213ENST00000540725 HSPB8Q9UJY1 196 aa8.05□□□□□ -1.12
SNHG1-213ENST00000540725 NCR3O14931 201 aa8.04□□□□□ -1.12
SNHG1-213ENST00000540725 LEPROTL1O95214 131 aa8.04□□□□□ -1.12
SNHG1-213ENST00000540725 MEIG1Q5JSS6 88 aa8.04□□□□□ -1.12
SNHG1-213ENST00000540725 PET117Q6UWS5 81 aa8.04□□□□□ -1.12
SNHG1-213ENST00000540725 FP248Q71RG6 208 aaPredicted RBP8.04□□□□□ -1.12
SNHG1-213ENST00000540725 MIR7-3HGQ8N6C7 128 aa8.04□□□□□ -1.12
SNHG1-213ENST00000540725 LINC00337Q8N6G1 96 aa8.04□□□□□ -1.12
SNHG1-213ENST00000540725 SPRR1AP35321 89 aa8.03□□□□□ -1.12
SNHG1-213ENST00000540725 DAND5Q8N907 189 aa8.03□□□□□ -1.12
SNHG1-213ENST00000540725 Q8NBF4 154 aa8.03□□□□□ -1.12
SNHG1-213ENST00000540725 KCNQ1DNQ9H478 68 aa8.03□□□□□ -1.12
SNHG1-213ENST00000540725 ETDCA0A1B0GVM5 59 aa8.02□□□□□ -1.13
SNHG1-213ENST00000540725 SYS1-DBNDD2H3BUS1 97 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms