RNA–Protein interactions for RNA: ENST00000536782.2

TNFRSF1B-204, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1B, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-204ENST00000536782 SERF1AO75920 110 aa11.49□□□□□ -0.57
TNFRSF1B-204ENST00000536782 FAM19A2Q8N3H0 131 aa11.49□□□□□ -0.57
TNFRSF1B-204ENST00000536782 FAT4Q6V0I7 4981 aa11.48□□□□□ -0.57
TNFRSF1B-204ENST00000536782 LINC00310P59036 64 aa11.48□□□□□ -0.57
TNFRSF1B-204ENST00000536782 SFTA2Q6UW10 78 aa11.48□□□□□ -0.57
TNFRSF1B-204ENST00000536782 LINC00304Q8N9R0 145 aa11.47□□□□□ -0.57
TNFRSF1B-204ENST00000536782 LEPROTL1O95214 131 aa11.46□□□□□ -0.57
TNFRSF1B-204ENST00000536782 VPREB1P12018 145 aa11.46□□□□□ -0.57
TNFRSF1B-204ENST00000536782 PRLHP81277 87 aa11.46□□□□□ -0.57
TNFRSF1B-204ENST00000536782 FAM19A1Q7Z5A9 133 aa11.46□□□□□ -0.57
TNFRSF1B-204ENST00000536782 SND1-IT1Q9HBX3 110 aa11.46□□□□□ -0.57
TNFRSF1B-204ENST00000536782 ERG28Q9UKR5 140 aa11.46□□□□□ -0.57
TNFRSF1B-204ENST00000536782 IGKV2D-26A0A0A0MRZ7 120 aa11.45□□□□□ -0.58
TNFRSF1B-204ENST00000536782 RPL24P83731 157 aaKnown RBP11.45□□□□□ -0.58
TNFRSF1B-204ENST00000536782 COX17Q14061 63 aa11.45□□□□□ -0.58
TNFRSF1B-204ENST00000536782 RETNLBQ9BQ08 111 aa11.45□□□□□ -0.58
TNFRSF1B-204ENST00000536782 TMEM126AQ9H061 195 aa11.45□□□□□ -0.58
TNFRSF1B-204ENST00000536782 TMEM223A0PJW6 202 aa11.44□□□□□ -0.58
TNFRSF1B-204ENST00000536782 HSPB8Q9UJY1 196 aa11.44□□□□□ -0.58
TNFRSF1B-204ENST00000536782 TMEM238C9JI98 176 aa11.43□□□□□ -0.58
TNFRSF1B-204ENST00000536782 ZNF625Q96I27 306 aaPredicted RBP11.42□□□□□ -0.58
TNFRSF1B-204ENST00000536782 KRTAP9-2Q9BYQ4 174 aa11.41□□□□□ -0.58
TNFRSF1B-204ENST00000536782 M0R378 163 aa11.4□□□□□ -0.58
TNFRSF1B-204ENST00000536782 CTAG1AP78358 180 aa11.39□□□□□ -0.59
TNFRSF1B-204ENST00000536782 LCE2AQ5TA79 106 aaPredicted RBP11.39□□□□□ -0.59
TNFRSF1B-204ENST00000536782 H0Y8G0 127 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BKO60814 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BJP06899 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BOP23527 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BBP33778 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BDP58876 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BCP62807 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST2H2BEQ16778 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BHQ93079 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 PLEKHB2Q96CS7 222 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BNQ99877 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIST1H2BMQ99879 126 aa11.38□□□□□ -0.59
TNFRSF1B-204ENST00000536782 PLNP26678 52 aa11.37□□□□□ -0.59
TNFRSF1B-204ENST00000536782 Q8NDZ9 215 aa11.37□□□□□ -0.59
TNFRSF1B-204ENST00000536782 CDIP1Q9H305 208 aa11.37□□□□□ -0.59
TNFRSF1B-204ENST00000536782 MUC17Q685J3 4493 aa11.36□□□□□ -0.59
TNFRSF1B-204ENST00000536782 IGLV7-46A0A075B6I9 117 aa11.36□□□□□ -0.59
TNFRSF1B-204ENST00000536782 FABP4P15090 132 aa11.36□□□□□ -0.59
TNFRSF1B-204ENST00000536782 TPRXLQ17RH7 258 aa11.36□□□□□ -0.59
TNFRSF1B-204ENST00000536782 HIGD2AQ9BW72 106 aa11.35□□□□□ -0.59
TNFRSF1B-204ENST00000536782 LINC00158P58513 81 aa11.34□□□□□ -0.59
TNFRSF1B-204ENST00000536782 MAP1LC3CQ9BXW4 147 aa11.34□□□□□ -0.59
TNFRSF1B-204ENST00000536782 DPM2O94777 84 aa11.33□□□□□ -0.6
TNFRSF1B-204ENST00000536782 HERV-K104P63124 156 aa11.33□□□□□ -0.6
TNFRSF1B-204ENST00000536782 C3orf22Q8N5N4 141 aa11.33□□□□□ -0.6
TNFRSF1B-204ENST00000536782 S100A1P23297 94 aa11.32□□□□□ -0.6
TNFRSF1B-204ENST00000536782 LINC00587B1AMM8 73 aa11.3□□□□□ -0.6
TNFRSF1B-204ENST00000536782 IGKCP01834 107 aa11.3□□□□□ -0.6
TNFRSF1B-204ENST00000536782 HERVK_113P61574 105 aa11.3□□□□□ -0.6
TNFRSF1B-204ENST00000536782 NDUFA12Q9UI09 145 aa11.3□□□□□ -0.6
TNFRSF1B-204ENST00000536782 A0A0U1RRA0 63 aa11.29□□□□□ -0.6
TNFRSF1B-204ENST00000536782 MYMXA0A1B0GTQ4 84 aa11.29□□□□□ -0.6
TNFRSF1B-204ENST00000536782 LEPROTO15243 131 aa11.29□□□□□ -0.6
TNFRSF1B-204ENST00000536782 SPAG11AQ6PDA7 123 aa11.29□□□□□ -0.6
TNFRSF1B-204ENST00000536782 SPRR4Q96PI1 79 aa11.29□□□□□ -0.6
TNFRSF1B-204ENST00000536782 MEIG1Q5JSS6 88 aa11.28□□□□□ -0.6
TNFRSF1B-204ENST00000536782 PPDPFQ9H3Y8 114 aa11.28□□□□□ -0.6
TNFRSF1B-204ENST00000536782 ATP6V1G1O75348 118 aa11.27□□□□□ -0.61
TNFRSF1B-204ENST00000536782 COA6Q5JTJ3 125 aaKnown RBP11.27□□□□□ -0.61
TNFRSF1B-204ENST00000536782 PMCHL2Q9BQD1 86 aa11.27□□□□□ -0.61
TNFRSF1B-204ENST00000536782 ZNF706Q9Y5V0 76 aaPredicted RBP11.27□□□□□ -0.61
TNFRSF1B-204ENST00000536782 SYS1-DBNDD2H3BUS1 97 aa11.26□□□□□ -0.61
TNFRSF1B-204ENST00000536782 SMIM13P0DJ93 91 aa11.26□□□□□ -0.61
TNFRSF1B-204ENST00000536782 J3QQQ9 107 aa11.25□□□□□ -0.61
TNFRSF1B-204ENST00000536782 NMUP48645 174 aa11.25□□□□□ -0.61
TNFRSF1B-204ENST00000536782 TSPEAR-AS2P59090 65 aa11.25□□□□□ -0.61
TNFRSF1B-204ENST00000536782 PRYO14603 147 aa11.24□□□□□ -0.61
TNFRSF1B-204ENST00000536782 C4orf48Q5BLP8 95 aa11.24□□□□□ -0.61
TNFRSF1B-204ENST00000536782 BOD1L2Q8IYS8 172 aa11.24□□□□□ -0.61
TNFRSF1B-204ENST00000536782 MIR7-3HGQ8N6C7 128 aa11.23□□□□□ -0.61
TNFRSF1B-204ENST00000536782 LGALS3P17931 250 aaKnown RBP11.22□□□□□ -0.61
TNFRSF1B-204ENST00000536782 LINC01545Q5VT33 79 aa11.22□□□□□ -0.61
TNFRSF1B-204ENST00000536782 PET117Q6UWS5 81 aa11.22□□□□□ -0.61
TNFRSF1B-204ENST00000536782 FP248Q71RG6 208 aaPredicted RBP11.22□□□□□ -0.61
TNFRSF1B-204ENST00000536782 LINC00337Q8N6G1 96 aa11.22□□□□□ -0.61
TNFRSF1B-204ENST00000536782 NCR3O14931 201 aa11.21□□□□□ -0.61
TNFRSF1B-204ENST00000536782 KCNQ1DNQ9H478 68 aa11.21□□□□□ -0.61
TNFRSF1B-204ENST00000536782 E9PLD3 99 aa11.2□□□□□ -0.62
TNFRSF1B-204ENST00000536782 SPRR1AP35321 89 aa11.2□□□□□ -0.62
TNFRSF1B-204ENST00000536782 SMCR5Q8TEV8 140 aa11.2□□□□□ -0.62
TNFRSF1B-204ENST00000536782 ETDCA0A1B0GVM5 59 aa11.19□□□□□ -0.62
TNFRSF1B-204ENST00000536782 DAND5Q8N907 189 aa11.19□□□□□ -0.62
TNFRSF1B-204ENST00000536782 Q8NBF4 154 aa11.19□□□□□ -0.62
TNFRSF1B-204ENST00000536782 LOC107984156A0A0G2JMH3 177 aa11.18□□□□□ -0.62
TNFRSF1B-204ENST00000536782 ARL17AQ8IVW1 177 aa11.18□□□□□ -0.62
TNFRSF1B-204ENST00000536782 KRTAP4-16G5E9R7 235 aaPredicted RBP11.17□□□□□ -0.62
TNFRSF1B-204ENST00000536782 TRBV10-3A0A0K0K1G6 114 aa11.16□□□□□ -0.62
TNFRSF1B-204ENST00000536782 C3orf79P0CE67 100 aa11.16□□□□□ -0.62
TNFRSF1B-204ENST00000536782 S100A12P80511 92 aa11.16□□□□□ -0.62
TNFRSF1B-204ENST00000536782 SPINK1P00995 79 aa11.15□□□□□ -0.62
TNFRSF1B-204ENST00000536782 KRTDAPP60985 99 aa11.13□□□□□ -0.63
TNFRSF1B-204ENST00000536782 KRTAP13-3Q3SY46 172 aa11.13□□□□□ -0.63
TNFRSF1B-204ENST00000536782 LINC00483Q53H64 154 aa11.13□□□□□ -0.63
TNFRSF1B-204ENST00000536782 A0A0J9YXY3 114 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms