RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ANAPC11Q9NYG5 84 aa6.31□□□□□ -1.4
CD44-227ENST00000528086 RNF213Q63HN8 5207 aa6.31□□□□□ -1.4
CD44-227ENST00000528086 IGKV2-28A0A075B6P5 120 aa6.3□□□□□ -1.4
CD44-227ENST00000528086 IGKV2D-28P01615 120 aa6.3□□□□□ -1.4
CD44-227ENST00000528086 COX17Q14061 63 aa6.3□□□□□ -1.4
CD44-227ENST00000528086 A0A0U1RRA0 63 aa6.29□□□□□ -1.4
CD44-227ENST00000528086 M0R378 163 aa6.29□□□□□ -1.4
CD44-227ENST00000528086 KRTAP13-2Q52LG2 175 aa6.29□□□□□ -1.4
CD44-227ENST00000528086 PMCHL2Q9BQD1 86 aa6.29□□□□□ -1.4
CD44-227ENST00000528086 SMIM13P0DJ93 91 aa6.28□□□□□ -1.4
CD44-227ENST00000528086 H0Y8G0 127 aa6.27□□□□□ -1.41
CD44-227ENST00000528086 LEPROTL1O95214 131 aa6.27□□□□□ -1.41
CD44-227ENST00000528086 FABP4P15090 132 aa6.27□□□□□ -1.41
CD44-227ENST00000528086 NKAPP1Q8N9T2 125 aa6.27□□□□□ -1.41
CD44-227ENST00000528086 EIF4EBP3O60516 100 aaPredicted RBP6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BKO60814 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BJP06899 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BOP23527 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BBP33778 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 RPL28P46779 137 aaKnown RBP6.26□□□□□ -1.41
CD44-227ENST00000528086 LINC00158P58513 81 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BDP58876 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BCP62807 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 PRLHP81277 87 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST2H2BEQ16778 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BHQ93079 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BNQ99877 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 HIST1H2BMQ99879 126 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 TMEM126AQ9H061 195 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 NDUFA12Q9UI09 145 aa6.26□□□□□ -1.41
CD44-227ENST00000528086 MIR7-3HGQ8N6C7 128 aa6.25□□□□□ -1.41
CD44-227ENST00000528086 KRTAP4-16G5E9R7 235 aaPredicted RBP6.24□□□□□ -1.41
CD44-227ENST00000528086 SFTA2Q6UW10 78 aa6.24□□□□□ -1.41
CD44-227ENST00000528086 LEPROTO15243 131 aa6.23□□□□□ -1.41
CD44-227ENST00000528086 S100A1P23297 94 aa6.23□□□□□ -1.41
CD44-227ENST00000528086 RPL24P83731 157 aaKnown RBP6.23□□□□□ -1.41
CD44-227ENST00000528086 DAND5Q8N907 189 aa6.23□□□□□ -1.41
CD44-227ENST00000528086 LOC107984156A0A0G2JMH3 177 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 DPM2O94777 84 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 SPRR1AP35321 89 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 RPL13AP40429 203 aaKnown RBP6.22□□□□□ -1.41
CD44-227ENST00000528086 UBE2AP49459 152 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 SOSTDC1Q6X4U4 206 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 ARL17AQ8IVW1 177 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 BOD1L2Q8IYS8 172 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 PLEKHB2Q96CS7 222 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 HSPB8Q9UJY1 196 aa6.22□□□□□ -1.41
CD44-227ENST00000528086 J3QQQ9 107 aa6.21□□□□□ -1.42
CD44-227ENST00000528086 NCR3O14931 201 aa6.21□□□□□ -1.42
CD44-227ENST00000528086 HERV-K104P63124 156 aa6.21□□□□□ -1.42
CD44-227ENST00000528086 ADAMTSL4-AS1Q5T5F5 129 aa6.21□□□□□ -1.42
CD44-227ENST00000528086 FAM19A1Q7Z5A9 133 aa6.21□□□□□ -1.42
CD44-227ENST00000528086 TRBV10-3A0A0K0K1G6 114 aa6.2□□□□□ -1.42
CD44-227ENST00000528086 MYMXA0A1B0GTQ4 84 aa6.2□□□□□ -1.42
CD44-227ENST00000528086 SYS1-DBNDD2H3BUS1 97 aa6.2□□□□□ -1.42
CD44-227ENST00000528086 IGKCP01834 107 aa6.2□□□□□ -1.42
CD44-227ENST00000528086 CRYGAP11844 174 aa6.2□□□□□ -1.42
CD44-227ENST00000528086 PLNP26678 52 aa6.2□□□□□ -1.42
CD44-227ENST00000528086 MEIG1Q5JSS6 88 aa6.2□□□□□ -1.42
CD44-227ENST00000528086 TSPAN13O95857 204 aa6.19□□□□□ -1.42
CD44-227ENST00000528086 FAM229BQ4G0N7 80 aa6.19□□□□□ -1.42
CD44-227ENST00000528086 COA6Q5JTJ3 125 aaKnown RBP6.19□□□□□ -1.42
CD44-227ENST00000528086 C3orf22Q8N5N4 141 aa6.19□□□□□ -1.42
CD44-227ENST00000528086 LITAFQ99732 161 aa6.19□□□□□ -1.42
CD44-227ENST00000528086 KCNQ1DNQ9H478 68 aa6.19□□□□□ -1.42
CD44-227ENST00000528086 IGKV2D-26A0A0A0MRZ7 120 aa6.18□□□□□ -1.42
CD44-227ENST00000528086 E9PLD3 99 aa6.18□□□□□ -1.42
CD44-227ENST00000528086 ATP6V1G1O75348 118 aa6.18□□□□□ -1.42
CD44-227ENST00000528086 LINC01545Q5VT33 79 aa6.18□□□□□ -1.42
CD44-227ENST00000528086 TYMSOSQ8TAI1 123 aa6.18□□□□□ -1.42
CD44-227ENST00000528086 A0A0J9YXY3 114 aa6.17□□□□□ -1.42
CD44-227ENST00000528086 SMCR5Q8TEV8 140 aa6.17□□□□□ -1.42
CD44-227ENST00000528086 SPRR4Q96PI1 79 aa6.17□□□□□ -1.42
CD44-227ENST00000528086 HIGD2AQ9BW72 106 aa6.17□□□□□ -1.42
CD44-227ENST00000528086 MAP1LC3CQ9BXW4 147 aa6.17□□□□□ -1.42
CD44-227ENST00000528086 TTTY13Q9BZ97 58 aa6.17□□□□□ -1.42
CD44-227ENST00000528086 PRYO14603 147 aa6.16□□□□□ -1.42
CD44-227ENST00000528086 ERC2-IT1O76042 136 aa6.16□□□□□ -1.42
CD44-227ENST00000528086 C3orf79P0CE67 100 aa6.16□□□□□ -1.42
CD44-227ENST00000528086 LINC00337Q8N6G1 96 aa6.16□□□□□ -1.42
CD44-227ENST00000528086 NMUP48645 174 aa6.15□□□□□ -1.42
CD44-227ENST00000528086 Q9BRP9 147 aa6.15□□□□□ -1.42
CD44-227ENST00000528086 MUC17Q685J3 4493 aa6.14□□□□□ -1.43
CD44-227ENST00000528086 MUC2Q02817 5179 aa6.14□□□□□ -1.43
CD44-227ENST00000528086 LINC00587B1AMM8 73 aa6.14□□□□□ -1.43
CD44-227ENST00000528086 B5MCH6 92 aa6.14□□□□□ -1.43
CD44-227ENST00000528086 IGLV6-57P01721 117 aa6.14□□□□□ -1.43
CD44-227ENST00000528086 LGALS3P17931 250 aaKnown RBP6.14□□□□□ -1.43
CD44-227ENST00000528086 HERVK_113P61574 105 aa6.14□□□□□ -1.43
CD44-227ENST00000528086 PRR4Q16378 134 aa6.14□□□□□ -1.43
CD44-227ENST00000528086 TRBV10-2A0A0K0K1G8 114 aa6.13□□□□□ -1.43
CD44-227ENST00000528086 NPC2P61916 151 aa6.13□□□□□ -1.43
CD44-227ENST00000528086 PET117Q6UWS5 81 aa6.13□□□□□ -1.43
CD44-227ENST00000528086 RETNLBQ9BQ08 111 aa6.13□□□□□ -1.43
CD44-227ENST00000528086 NDUFC2O95298 119 aa6.12□□□□□ -1.43
CD44-227ENST00000528086 LINC00304Q8N9R0 145 aa6.12□□□□□ -1.43
CD44-227ENST00000528086 DDTP30046 118 aa6.11□□□□□ -1.43
CD44-227ENST00000528086 LINC00483Q53H64 154 aa6.11□□□□□ -1.43
CD44-227ENST00000528086 SPANXB1Q9NS25 103 aaPredicted RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms