RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 Q8N814 137 aa13.63□□□□□ -0.23
VPS28-208ENST00000527797 IGKV2-28A0A075B6P5 120 aa13.61□□□□□ -0.23
VPS28-208ENST00000527797 TRAV13-2A0A0B4J235 113 aa13.61□□□□□ -0.23
VPS28-208ENST00000527797 LOC107984640A0A0U1RRK4 108 aa13.61□□□□□ -0.23
VPS28-208ENST00000527797 IGKV2D-28P01615 120 aa13.61□□□□□ -0.23
VPS28-208ENST00000527797 NAA38Q9BRA0 125 aaKnown RBP13.61□□□□□ -0.23
VPS28-208ENST00000527797 TSPAN13O95857 204 aa13.61□□□□□ -0.23
VPS28-208ENST00000527797 H7C2G1 150 aa13.6□□□□□ -0.23
VPS28-208ENST00000527797 RPL13AP40429 203 aaKnown RBP13.6□□□□□ -0.23
VPS28-208ENST00000527797 Q1RN00 199 aa13.59□□□□□ -0.23
VPS28-208ENST00000527797 LINC00337Q8N6G1 96 aa13.58□□□□□ -0.24
VPS28-208ENST00000527797 PRR3P79522 188 aaKnown RBP13.57□□□□□ -0.24
VPS28-208ENST00000527797 GAGE2BQ13066 116 aa13.57□□□□□ -0.24
VPS28-208ENST00000527797 Q8NDZ9 215 aa13.57□□□□□ -0.24
VPS28-208ENST00000527797 LCE6AA0A183 80 aa13.57□□□□□ -0.24
VPS28-208ENST00000527797 C9orf129Q5T035 196 aaKnown RBP13.57□□□□□ -0.24
VPS28-208ENST00000527797 C9orf163Q8N9P6 203 aa13.56□□□□□ -0.24
VPS28-208ENST00000527797 A0A1W2PPM0 123 aa13.55□□□□□ -0.24
VPS28-208ENST00000527797 NCR3O14931 201 aa13.55□□□□□ -0.24
VPS28-208ENST00000527797 OR13C6PQ8NH95 151 aa13.55□□□□□ -0.24
VPS28-208ENST00000527797 ALMS1Q8TCU4 4167 aa13.55□□□□□ -0.24
VPS28-208ENST00000527797 PKIGQ9Y2B9 76 aa13.54□□□□□ -0.24
VPS28-208ENST00000527797 FABP2P12104 132 aa13.53□□□□□ -0.24
VPS28-208ENST00000527797 PSMB2P49721 201 aa13.53□□□□□ -0.24
VPS28-208ENST00000527797 RTL8CO15255 209 aa13.53□□□□□ -0.24
VPS28-208ENST00000527797 VPREB1P12018 145 aa13.53□□□□□ -0.24
VPS28-208ENST00000527797 VAMP3Q15836 100 aa13.53□□□□□ -0.24
VPS28-208ENST00000527797 TRBV10-2A0A0K0K1G8 114 aa13.52□□□□□ -0.25
VPS28-208ENST00000527797 C16orf90A8MZG2 172 aa13.51□□□□□ -0.25
VPS28-208ENST00000527797 TNP2Q05952 138 aa13.51□□□□□ -0.25
VPS28-208ENST00000527797 TMEM126AQ9H061 195 aa13.5□□□□□ -0.25
VPS28-208ENST00000527797 PLA2G2DQ9UNK4 145 aa13.5□□□□□ -0.25
VPS28-208ENST00000527797 S100A7L2Q5SY68 101 aa13.5□□□□□ -0.25
VPS28-208ENST00000527797 A0A096LNI7 61 aa13.49□□□□□ -0.25
VPS28-208ENST00000527797 SCGB1C2P0DMR2 95 aa13.49□□□□□ -0.25
VPS28-208ENST00000527797 LYRM7Q5U5X0 104 aa13.48□□□□□ -0.25
VPS28-208ENST00000527797 DNAH10Q8IVF4 4471 aa13.48□□□□□ -0.25
VPS28-208ENST00000527797 M0R378 163 aa13.47□□□□□ -0.25
VPS28-208ENST00000527797 TRIAP1O43715 76 aa13.47□□□□□ -0.25
VPS28-208ENST00000527797 SDIM1Q6ZPB5 146 aa13.47□□□□□ -0.25
VPS28-208ENST00000527797 IGKV2-24A0A0C4DH68 120 aa13.46□□□□□ -0.25
VPS28-208ENST00000527797 COX6CP09669 75 aa13.46□□□□□ -0.25
VPS28-208ENST00000527797 SERTAD4-AS1Q5TG53 156 aa13.46□□□□□ -0.25
VPS28-208ENST00000527797 NKAPP1Q8N9T2 125 aa13.46□□□□□ -0.25
VPS28-208ENST00000527797 SPCS1Q9Y6A9 102 aa13.46□□□□□ -0.25
VPS28-208ENST00000527797 RPL28P46779 137 aaKnown RBP13.46□□□□□ -0.26
VPS28-208ENST00000527797 LINC01620Q4KN68 170 aa13.46□□□□□ -0.26
VPS28-208ENST00000527797 SMIM11BQ8TCY0 68 aa13.46□□□□□ -0.26
VPS28-208ENST00000527797 KMT2AQ03164 3969 aa13.45□□□□□ -0.26
VPS28-208ENST00000527797 IGLV5-52A0A0A0MRZ9 124 aa13.44□□□□□ -0.26
VPS28-208ENST00000527797 FAM168BA1KXE4 195 aa13.44□□□□□ -0.26
VPS28-208ENST00000527797 GAGE10A6NGK3 116 aa13.44□□□□□ -0.26
VPS28-208ENST00000527797 DNAH6Q9C0G6 4158 aa13.44□□□□□ -0.26
VPS28-208ENST00000527797 IGLV5-37A0A075B6J1 123 aa13.43□□□□□ -0.26
VPS28-208ENST00000527797 IGLV6-57P01721 117 aa13.43□□□□□ -0.26
VPS28-208ENST00000527797 K7EP34 96 aa13.42□□□□□ -0.26
VPS28-208ENST00000527797 GTF2H5Q6ZYL4 71 aa13.42□□□□□ -0.26
VPS28-208ENST00000527797 LINC00474Q9P2X8 69 aa13.42□□□□□ -0.26
VPS28-208ENST00000527797 TRBV10-3A0A0K0K1G6 114 aa13.42□□□□□ -0.26
VPS28-208ENST00000527797 FUSP35637 526 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS28-208ENST00000527797 FAM19A5Q7Z5A7 132 aaPredicted RBP13.41□□□□□ -0.26
VPS28-208ENST00000527797 TRBV20-1A0A075B6N2 111 aa13.39□□□□□ -0.27
VPS28-208ENST00000527797 CHTF8P0CG12 524 aa13.39□□□□□ -0.27
VPS28-208ENST00000527797 KRTAP7-1Q8IUC3 87 aa13.39□□□□□ -0.27
VPS28-208ENST00000527797 C22orf24Q9Y442 160 aa13.39□□□□□ -0.27
VPS28-208ENST00000527797 UBE2V1Q13404 147 aa13.39□□□□□ -0.27
VPS28-208ENST00000527797 C7orf33Q8WU49 177 aa13.39□□□□□ -0.27
VPS28-208ENST00000527797 CBY1Q9Y3M2 126 aa13.38□□□□□ -0.27
VPS28-208ENST00000527797 TCL1BO95988 128 aa13.37□□□□□ -0.27
VPS28-208ENST00000527797 TRAV23DV6A0A075B6W5 121 aa13.36□□□□□ -0.27
VPS28-208ENST00000527797 A0A1W2PNN7 141 aa13.36□□□□□ -0.27
VPS28-208ENST00000527797 MRPL55Q7Z7F7 128 aaKnown RBP13.35□□□□□ -0.27
VPS28-208ENST00000527797 DPH3Q96FX2 82 aa13.35□□□□□ -0.27
VPS28-208ENST00000527797 H0YGX0 51 aa13.34□□□□□ -0.27
VPS28-208ENST00000527797 KRTAP10-2P60368 255 aa13.34□□□□□ -0.27
VPS28-208ENST00000527797 ATXN8Q156A1 80 aa13.34□□□□□ -0.27
VPS28-208ENST00000527797 C6orf99Q4VX62 202 aa13.34□□□□□ -0.27
VPS28-208ENST00000527797 CLEC2BQ92478 149 aa13.34□□□□□ -0.27
VPS28-208ENST00000527797 LINC00167Q96N53 147 aa13.34□□□□□ -0.27
VPS28-208ENST00000527797 M0QXV9 152 aa13.33□□□□□ -0.28
VPS28-208ENST00000527797 LINC00336Q6ZUF6 198 aa13.33□□□□□ -0.28
VPS28-208ENST00000527797 DNAH2Q9P225 4427 aa13.33□□□□□ -0.28
VPS28-208ENST00000527797 H3BMG7 143 aa13.32□□□□□ -0.28
VPS28-208ENST00000527797 SPACA4Q8TDM5 124 aa13.32□□□□□ -0.28
VPS28-208ENST00000527797 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.32□□□□□ -0.28
VPS28-208ENST00000527797 PANO1I0J062 215 aa13.31□□□□□ -0.28
VPS28-208ENST00000527797 IGLV1-50A0A075B6I6 118 aa13.31□□□□□ -0.28
VPS28-208ENST00000527797 RPL37AP8A6NKH3 93 aa13.31□□□□□ -0.28
VPS28-208ENST00000527797 ZNF73O43830 326 aaPredicted RBP13.31□□□□□ -0.28
VPS28-208ENST00000527797 DIRC1Q969H9 104 aa13.31□□□□□ -0.28
VPS28-208ENST00000527797 KCNQ1DNQ9H478 68 aa13.31□□□□□ -0.28
VPS28-208ENST00000527797 HYDINQ4G0P3 5121 aa13.3□□□□□ -0.28
VPS28-208ENST00000527797 LST1O00453 97 aa13.29□□□□□ -0.28
VPS28-208ENST00000527797 FAM218AQ96MZ4 157 aa13.27□□□□□ -0.29
VPS28-208ENST00000527797 DNAH17Q9UFH2 4485 aa13.26□□□□□ -0.29
VPS28-208ENST00000527797 PRYO14603 147 aa13.26□□□□□ -0.29
VPS28-208ENST00000527797 TRBV7-6A0A0J9YX20 115 aa13.25□□□□□ -0.29
VPS28-208ENST00000527797 A0A087WYN8 130 aa13.24□□□□□ -0.29
VPS28-208ENST00000527797 PHF5AQ7RTV0 110 aaKnown RBP13.24□□□□□ -0.29
VPS28-208ENST00000527797 EPM2AB3EWF7 344 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 224.6 ms