RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 Q8NAQ8 132 aa11.21□□□□□ -0.61
PCDHA3-201ENST00000522353 C16orf90A8MZG2 172 aa11.2□□□□□ -0.62
PCDHA3-201ENST00000522353 C6orf48Q9UBA6 75 aa11.19□□□□□ -0.62
PCDHA3-201ENST00000522353 TRBV7-7A0A0K0K1E9 115 aa11.18□□□□□ -0.62
PCDHA3-201ENST00000522353 RETNLBQ9BQ08 111 aa11.18□□□□□ -0.62
PCDHA3-201ENST00000522353 RTL8CO15255 209 aa11.18□□□□□ -0.62
PCDHA3-201ENST00000522353 H0Y9P7 68 aa11.18□□□□□ -0.62
PCDHA3-201ENST00000522353 HCG22E2RYF7 251 aa11.17□□□□□ -0.62
PCDHA3-201ENST00000522353 LINC00846Q9NV44 126 aa11.17□□□□□ -0.62
PCDHA3-201ENST00000522353 HECTD1Q9ULT8 2610 aa11.16□□□□□ -0.62
PCDHA3-201ENST00000522353 LINC00588Q9Y4M8 146 aa11.16□□□□□ -0.62
PCDHA3-201ENST00000522353 DEFB116Q30KQ4 102 aa11.16□□□□□ -0.62
PCDHA3-201ENST00000522353 Q6ZRP5 223 aa11.16□□□□□ -0.62
PCDHA3-201ENST00000522353 CRYGAP11844 174 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 PCOTHQ58A44 107 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 SPACA4Q8TDM5 124 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 IGLV5-45A0A087WSX0 123 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 CXCL6P80162 114 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 MOBPQ13875 183 aa11.14□□□□□ -0.63
PCDHA3-201ENST00000522353 MGAM2Q2M2H8 2515 aa11.14□□□□□ -0.63
PCDHA3-201ENST00000522353 KIAA0087Q14695 138 aa11.14□□□□□ -0.63
PCDHA3-201ENST00000522353 KLK9Q2XQG4 91 aa11.13□□□□□ -0.63
PCDHA3-201ENST00000522353 TMEM254Q8TBM7 123 aa11.13□□□□□ -0.63
PCDHA3-201ENST00000522353 PTPRBP23467 1997 aa11.12□□□□□ -0.63
PCDHA3-201ENST00000522353 hDV103S1A0JD37 113 aa11.11□□□□□ -0.63
PCDHA3-201ENST00000522353 SPINK1P00995 79 aa11.1□□□□□ -0.63
PCDHA3-201ENST00000522353 SOSTDC1Q6X4U4 206 aa11.1□□□□□ -0.63
PCDHA3-201ENST00000522353 USP24Q9UPU5 2620 aa11.1□□□□□ -0.63
PCDHA3-201ENST00000522353 CDIP1Q9H305 208 aa11.09□□□□□ -0.63
PCDHA3-201ENST00000522353 A0A1B0GW54 56 aa11.08□□□□□ -0.63
PCDHA3-201ENST00000522353 PHF5AQ7RTV0 110 aaKnown RBP11.08□□□□□ -0.64
PCDHA3-201ENST00000522353 DNAH10OSP0CZ25 163 aa11.08□□□□□ -0.64
PCDHA3-201ENST00000522353 GVQW2A0A096LPI5 108 aaPredicted RBP11.08□□□□□ -0.64
PCDHA3-201ENST00000522353 SPATA3Q8NHX4 192 aa11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 IGKV2D-30A0A075B6S6 120 aa11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 PLA2G1BP04054 148 aaKnown RBP11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 IGKV2-30P06310 120 aa11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 TYMSOSQ8TAI1 123 aa11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 Q8NBF4 154 aa11.06□□□□□ -0.64
PCDHA3-201ENST00000522353 GOLGB1Q14789 3259 aaKnown RBP11.05□□□□□ -0.64
PCDHA3-201ENST00000522353 ELOF1P60002 83 aaKnown RBP11.05□□□□□ -0.64
PCDHA3-201ENST00000522353 Q6ZRX8 168 aa11.05□□□□□ -0.64
PCDHA3-201ENST00000522353 Q9UF83 564 aa11.05□□□□□ -0.64
PCDHA3-201ENST00000522353 COL27A1Q8IZC6 1860 aaPredicted RBP11.04□□□□□ -0.64
PCDHA3-201ENST00000522353 C1orf64Q8NEQ6 169 aa11.04□□□□□ -0.64
PCDHA3-201ENST00000522353 C1orf195Q5TG92 126 aa11.04□□□□□ -0.64
PCDHA3-201ENST00000522353 K7EIL1 84 aa11.03□□□□□ -0.64
PCDHA3-201ENST00000522353 EPM2AB3EWF7 344 aa11.03□□□□□ -0.64
PCDHA3-201ENST00000522353 TP53AIP1Q9HCN2 124 aa11.03□□□□□ -0.64
PCDHA3-201ENST00000522353 PRO0461Q9UI25 63 aa11.02□□□□□ -0.64
PCDHA3-201ENST00000522353 BCE1O60756 84 aa11□□□□□ -0.65
PCDHA3-201ENST00000522353 J3QL48 77 aa11□□□□□ -0.65
PCDHA3-201ENST00000522353 SMCPP49901 116 aaPredicted RBP10.99□□□□□ -0.65
PCDHA3-201ENST00000522353 PMAIP1Q13794 54 aa10.99□□□□□ -0.65
PCDHA3-201ENST00000522353 A0A096LNT2 108 aa10.99□□□□□ -0.65
PCDHA3-201ENST00000522353 SMIM29Q86T20 159 aa10.98□□□□□ -0.65
PCDHA3-201ENST00000522353 MAST4O15021 2626 aa10.98□□□□□ -0.65
PCDHA3-201ENST00000522353 C19orf73Q9NVV2 129 aa10.97□□□□□ -0.65
PCDHA3-201ENST00000522353 CHTF8P0CG12 524 aa10.97□□□□□ -0.65
PCDHA3-201ENST00000522353 LINC00476Q8WZB0 136 aa10.97□□□□□ -0.65
PCDHA3-201ENST00000522353 PSPHP1O15172 72 aa10.96□□□□□ -0.66
PCDHA3-201ENST00000522353 RPL37AP61513 92 aaKnown RBP10.96□□□□□ -0.66
PCDHA3-201ENST00000522353 CSNK1G2-AS1Q8NCQ2 148 aa10.95□□□□□ -0.66
PCDHA3-201ENST00000522353 FAM218AQ96MZ4 157 aa10.95□□□□□ -0.66
PCDHA3-201ENST00000522353 KRTAP10-11P60412 298 aa10.95□□□□□ -0.66
PCDHA3-201ENST00000522353 C7orf65Q6ZTY9 151 aa10.93□□□□□ -0.66
PCDHA3-201ENST00000522353 LOC110117498A0A087WWA1 95 aa10.93□□□□□ -0.66
PCDHA3-201ENST00000522353 LINC00313P59037 77 aa10.93□□□□□ -0.66
PCDHA3-201ENST00000522353 ATRQ13535 2644 aa10.92□□□□□ -0.66
PCDHA3-201ENST00000522353 Q6ZQT0 140 aa10.92□□□□□ -0.66
PCDHA3-201ENST00000522353 H3BPC8 53 aa10.9□□□□□ -0.66
PCDHA3-201ENST00000522353 PCSK5Q92824 1860 aa10.9□□□□□ -0.66
PCDHA3-201ENST00000522353 VPREB1P12018 145 aa10.89□□□□□ -0.67
PCDHA3-201ENST00000522353 ST20-AS1Q8NBB2 130 aa10.88□□□□□ -0.67
PCDHA3-201ENST00000522353 ACYP2P14621 99 aa10.88□□□□□ -0.67
PCDHA3-201ENST00000522353 ATP11AUNQ6ZP68 121 aa10.88□□□□□ -0.67
PCDHA3-201ENST00000522353 TM2D3Q9BRN9 247 aa10.85□□□□□ -0.67
PCDHA3-201ENST00000522353 A0A1B0GU69 56 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 IGLV6-57P01721 117 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 PRR34Q9NV39 138 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 C8orf87E5RJ46 101 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 KRTAP10-3P60369 221 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 HELZ2Q9BYK8 2649 aaKnown RBP10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 TRBV7-4A0A0J9YYF1 115 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 TRAV22A0A0B4J277 110 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 LINC00336Q6ZUF6 198 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 Q96NJ1 140 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 LITAFQ99732 161 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 A0A087WTM6 91 aa10.81□□□□□ -0.68
PCDHA3-201ENST00000522353 IGLV1-50A0A075B6I6 118 aa10.81□□□□□ -0.68
PCDHA3-201ENST00000522353 FAM168BA1KXE4 195 aa10.81□□□□□ -0.68
PCDHA3-201ENST00000522353 KCNQ1DNQ9H478 68 aa10.79□□□□□ -0.68
PCDHA3-201ENST00000522353 SPAG11AQ6PDA7 123 aa10.79□□□□□ -0.68
PCDHA3-201ENST00000522353 LINC00612Q8N6U2 182 aa10.79□□□□□ -0.68
PCDHA3-201ENST00000522353 SERTAD4-AS1Q5TG53 156 aa10.79□□□□□ -0.68
PCDHA3-201ENST00000522353 GIG44P09565 113 aaPredicted RBP10.78□□□□□ -0.68
PCDHA3-201ENST00000522353 SSBP3-AS1Q7Z2R9 100 aa10.77□□□□□ -0.68
PCDHA3-201ENST00000522353 C9orf163Q8N9P6 203 aa10.77□□□□□ -0.69
PCDHA3-201ENST00000522353 KRTAP1-3Q8IUG1 177 aa10.77□□□□□ -0.69
PCDHA3-201ENST00000522353 ZNF861PO60384 105 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms