RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 S100A7L2Q5SY68 101 aa7.53□□□□□ -1.2
SH3RF1-203ENST00000508685 Q6JHZ5 121 aa7.53□□□□□ -1.2
SH3RF1-203ENST00000508685 Q8N3U1 123 aa7.53□□□□□ -1.2
SH3RF1-203ENST00000508685 CLPSL2Q6UWE3 100 aa7.52□□□□□ -1.2
SH3RF1-203ENST00000508685 TMEM256-PLSCR3K7ERE1 68 aa7.52□□□□□ -1.21
SH3RF1-203ENST00000508685 ATOX1O00244 68 aa7.52□□□□□ -1.21
SH3RF1-203ENST00000508685 C3orf22Q8N5N4 141 aa7.52□□□□□ -1.21
SH3RF1-203ENST00000508685 C14orf132Q9NPU4 83 aa7.51□□□□□ -1.21
SH3RF1-203ENST00000508685 KIAA0087Q14695 138 aa7.51□□□□□ -1.21
SH3RF1-203ENST00000508685 Q6ZTC4 211 aa7.51□□□□□ -1.21
SH3RF1-203ENST00000508685 HIST1H4AP62805 103 aaKnown RBP7.5□□□□□ -1.21
SH3RF1-203ENST00000508685 Q8N814 137 aa7.5□□□□□ -1.21
SH3RF1-203ENST00000508685 LINC00526Q96FQ7 95 aa7.5□□□□□ -1.21
SH3RF1-203ENST00000508685 A0A0J9YWU9 116 aa7.49□□□□□ -1.21
SH3RF1-203ENST00000508685 CCKP06307 115 aa7.49□□□□□ -1.21
SH3RF1-203ENST00000508685 CHCHD10Q8WYQ3 142 aaPredicted RBP7.49□□□□□ -1.21
SH3RF1-203ENST00000508685 H3BQ85 93 aa7.49□□□□□ -1.21
SH3RF1-203ENST00000508685 REG3AQ06141 175 aa7.49□□□□□ -1.21
SH3RF1-203ENST00000508685 LINC00269Q8N2A0 174 aa7.49□□□□□ -1.21
SH3RF1-203ENST00000508685 C11orf68Q9H3H3 251 aaKnown RBP7.49□□□□□ -1.21
SH3RF1-203ENST00000508685 COL7A1Q02388 2944 aa7.48□□□□□ -1.21
SH3RF1-203ENST00000508685 COX7CP15954 63 aa7.48□□□□□ -1.21
SH3RF1-203ENST00000508685 KPRPQ5T749 579 aaPredicted RBP7.48□□□□□ -1.21
SH3RF1-203ENST00000508685 C9orf153Q5TBE3 101 aa7.48□□□□□ -1.21
SH3RF1-203ENST00000508685 ATP5EP2Q5VTU8 51 aa7.48□□□□□ -1.21
SH3RF1-203ENST00000508685 NCR3O14931 201 aa7.47□□□□□ -1.21
SH3RF1-203ENST00000508685 ANGP03950 147 aaKnown RBP7.47□□□□□ -1.21
SH3RF1-203ENST00000508685 NANOS2P60321 138 aaKnown RBP7.47□□□□□ -1.21
SH3RF1-203ENST00000508685 LINC00846Q9NV44 126 aa7.47□□□□□ -1.21
SH3RF1-203ENST00000508685 IGLV10-54A0A075B6I4 117 aa7.45□□□□□ -1.22
SH3RF1-203ENST00000508685 K7EIL1 84 aa7.45□□□□□ -1.22
SH3RF1-203ENST00000508685 RPL18AQ02543 176 aaKnown RBP7.45□□□□□ -1.22
SH3RF1-203ENST00000508685 C9orf129Q5T035 196 aaKnown RBP7.45□□□□□ -1.22
SH3RF1-203ENST00000508685 LELP1Q5T871 98 aa7.45□□□□□ -1.22
SH3RF1-203ENST00000508685 MRAPQ8TCY5 172 aa7.45□□□□□ -1.22
SH3RF1-203ENST00000508685 SLPIP03973 132 aa7.45□□□□□ -1.22
SH3RF1-203ENST00000508685 HUWE1Q7Z6Z7 4374 aaKnown RBP7.44□□□□□ -1.22
SH3RF1-203ENST00000508685 CRYGAP11844 174 aa7.44□□□□□ -1.22
SH3RF1-203ENST00000508685 LYPD5Q6UWN5 251 aa7.44□□□□□ -1.22
SH3RF1-203ENST00000508685 STAB2Q8WWQ8 2551 aa7.44□□□□□ -1.22
SH3RF1-203ENST00000508685 C11orf45Q8TAV5 145 aa7.44□□□□□ -1.22
SH3RF1-203ENST00000508685 TRBV10-3A0A0K0K1G6 114 aa7.43□□□□□ -1.22
SH3RF1-203ENST00000508685 GHRHP01286 108 aa7.43□□□□□ -1.22
SH3RF1-203ENST00000508685 GVQW2A0A096LPI5 108 aaPredicted RBP7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 LINC00575Q6W349 94 aa7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 C2orf48Q96LS8 159 aa7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 LYSTQ99698 3801 aa7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 DEFB131BA0A096LNP1 70 aa7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 H3BNG1 76 aa7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 SPAG11BQ08648 103 aa7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 C6orf99Q4VX62 202 aa7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 PRR34Q9NV39 138 aa7.42□□□□□ -1.22
SH3RF1-203ENST00000508685 IGKV3D-7A0A0C4DH55 119 aa7.41□□□□□ -1.22
SH3RF1-203ENST00000508685 PDE6GP18545 87 aa7.41□□□□□ -1.22
SH3RF1-203ENST00000508685 PRR3P79522 188 aaKnown RBP7.41□□□□□ -1.22
SH3RF1-203ENST00000508685 WFDC10BQ8IUB3 73 aa7.41□□□□□ -1.22
SH3RF1-203ENST00000508685 SMIM20Q8N5G0 67 aa7.41□□□□□ -1.22
SH3RF1-203ENST00000508685 SERP2Q8N6R1 65 aa7.41□□□□□ -1.22
SH3RF1-203ENST00000508685 TM2D3Q9BRN9 247 aa7.41□□□□□ -1.22
SH3RF1-203ENST00000508685 KLK12Q9UKR0 248 aa7.41□□□□□ -1.22
SH3RF1-203ENST00000508685 hADV29S1A0JD25 119 aa7.4□□□□□ -1.22
SH3RF1-203ENST00000508685 ZNF561-AS1K7EIQ3 104 aa7.4□□□□□ -1.22
SH3RF1-203ENST00000508685 UBL5Q9BZL1 73 aa7.4□□□□□ -1.22
SH3RF1-203ENST00000508685 PRKDCP78527 4128 aaKnown RBP7.4□□□□□ -1.22
SH3RF1-203ENST00000508685 IGLV6-57P01721 117 aa7.4□□□□□ -1.23
SH3RF1-203ENST00000508685 LOC110117498A0A087WWA1 95 aa7.39□□□□□ -1.23
SH3RF1-203ENST00000508685 RBM3P98179 157 aaKnown RBP7.39□□□□□ -1.23
SH3RF1-203ENST00000508685 TGP01266 2768 aa7.39□□□□□ -1.23
SH3RF1-203ENST00000508685 ESRGQ1W209 222 aa7.39□□□□□ -1.23
SH3RF1-203ENST00000508685 C9orf116Q5BN46 136 aaPredicted RBP7.39□□□□□ -1.23
SH3RF1-203ENST00000508685 ENHOQ6UWT2 76 aa7.39□□□□□ -1.23
SH3RF1-203ENST00000508685 USP17L23D6RBM5 183 aa7.38□□□□□ -1.23
SH3RF1-203ENST00000508685 UNQ6190/PRO20217Q6UXQ8 127 aa7.38□□□□□ -1.23
SH3RF1-203ENST00000508685 TRBV7-6A0A0J9YX20 115 aa7.37□□□□□ -1.23
SH3RF1-203ENST00000508685 C6orf223Q8N319 242 aa7.37□□□□□ -1.23
SH3RF1-203ENST00000508685 BCE1O60756 84 aa7.37□□□□□ -1.23
SH3RF1-203ENST00000508685 RPS28P62857 69 aaKnown RBP7.36□□□□□ -1.23
SH3RF1-203ENST00000508685 C10orf25Q5T742 122 aa7.35□□□□□ -1.23
SH3RF1-203ENST00000508685 Q6ZQT0 140 aa7.35□□□□□ -1.23
SH3RF1-203ENST00000508685 CSMD3Q7Z407 3707 aa7.35□□□□□ -1.23
SH3RF1-203ENST00000508685 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.35□□□□□ -1.23
SH3RF1-203ENST00000508685 DIRC1Q969H9 104 aa7.35□□□□□ -1.23
SH3RF1-203ENST00000508685 DSCR8Q96T75 97 aa7.35□□□□□ -1.23
SH3RF1-203ENST00000508685 LAMTOR3Q9UHA4 124 aa7.35□□□□□ -1.23
SH3RF1-203ENST00000508685 TMEM258P61165 79 aa7.34□□□□□ -1.23
SH3RF1-203ENST00000508685 TRAV23DV6A0A075B6W5 121 aa7.34□□□□□ -1.24
SH3RF1-203ENST00000508685 F8WDY8 70 aa7.34□□□□□ -1.24
SH3RF1-203ENST00000508685 Q8NDZ9 215 aa7.34□□□□□ -1.24
SH3RF1-203ENST00000508685 DNAH9Q9NYC9 4486 aa7.33□□□□□ -1.24
SH3RF1-203ENST00000508685 A0A087WVE0 104 aa7.33□□□□□ -1.24
SH3RF1-203ENST00000508685 TRAV10A0A0B4J240 114 aa7.33□□□□□ -1.24
SH3RF1-203ENST00000508685 J3KT08 172 aa7.33□□□□□ -1.24
SH3RF1-203ENST00000508685 TENM2Q9NT68 2774 aa7.32□□□□□ -1.24
SH3RF1-203ENST00000508685 UPK3BQ9BT76 320 aa7.32□□□□□ -1.24
SH3RF1-203ENST00000508685 C6orf48Q9UBA6 75 aa7.32□□□□□ -1.24
SH3RF1-203ENST00000508685 NDUFC2-KCTD14E9PQ53 114 aa7.31□□□□□ -1.24
SH3RF1-203ENST00000508685 ZNF73O43830 326 aaPredicted RBP7.31□□□□□ -1.24
SH3RF1-203ENST00000508685 COX7BP24311 80 aa7.31□□□□□ -1.24
SH3RF1-203ENST00000508685 LINC01556Q5JQF7 62 aa7.3□□□□□ -1.24
SH3RF1-203ENST00000508685 Q6ZQY7 126 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms