RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 UNQ6190/PRO20217Q6UXQ8 127 aa11.99□□□□□ -0.49
NUP54-205ENST00000507257 DIRC1Q969H9 104 aa11.99□□□□□ -0.49
NUP54-205ENST00000507257 IGLV10-54A0A075B6I4 117 aa11.98□□□□□ -0.49
NUP54-205ENST00000507257 SMIM26A0A096LP01 95 aa11.98□□□□□ -0.49
NUP54-205ENST00000507257 ERC2-IT1O76042 136 aa11.98□□□□□ -0.49
NUP54-205ENST00000507257 Q8N3U1 123 aa11.98□□□□□ -0.49
NUP54-205ENST00000507257 JMJD1CQ15652 2540 aa11.97□□□□□ -0.49
NUP54-205ENST00000507257 A0A096LPF7 62 aa11.97□□□□□ -0.49
NUP54-205ENST00000507257 CYSRT1A8MQ03 144 aa11.96□□□□□ -0.49
NUP54-205ENST00000507257 POLQO75417 2590 aa11.96□□□□□ -0.5
NUP54-205ENST00000507257 F8WEM9 126 aa11.95□□□□□ -0.5
NUP54-205ENST00000507257 RMI2Q96E14 147 aa11.95□□□□□ -0.5
NUP54-205ENST00000507257 ELOF1P60002 83 aaKnown RBP11.94□□□□□ -0.5
NUP54-205ENST00000507257 PRR34Q9NV39 138 aa11.94□□□□□ -0.5
NUP54-205ENST00000507257 ACACBO00763 2458 aa11.94□□□□□ -0.5
NUP54-205ENST00000507257 COX7BP24311 80 aa11.94□□□□□ -0.5
NUP54-205ENST00000507257 SNURFQ9Y675 71 aa11.93□□□□□ -0.5
NUP54-205ENST00000507257 ZNF73O43830 326 aaPredicted RBP11.92□□□□□ -0.5
NUP54-205ENST00000507257 PRO0628Q9UI54 55 aa11.92□□□□□ -0.5
NUP54-205ENST00000507257 NAV2Q8IVL1 2488 aa11.91□□□□□ -0.5
NUP54-205ENST00000507257 EPG5Q9HCE0 2579 aa11.91□□□□□ -0.5
NUP54-205ENST00000507257 LELP1Q5T871 98 aa11.91□□□□□ -0.5
NUP54-205ENST00000507257 TM2D3Q9BRN9 247 aa11.91□□□□□ -0.5
NUP54-205ENST00000507257 PTPN13Q12923 2485 aa11.9□□□□□ -0.5
NUP54-205ENST00000507257 MIFP14174 115 aa11.9□□□□□ -0.51
NUP54-205ENST00000507257 LRRK2Q5S007 2527 aa11.89□□□□□ -0.51
NUP54-205ENST00000507257 NREPQ16612 68 aa11.89□□□□□ -0.51
NUP54-205ENST00000507257 FP248Q71RG6 208 aaPredicted RBP11.89□□□□□ -0.51
NUP54-205ENST00000507257 C6orf48Q9UBA6 75 aa11.89□□□□□ -0.51
NUP54-205ENST00000507257 CELA1Q9UNI1 258 aa11.88□□□□□ -0.51
NUP54-205ENST00000507257 MYO18BQ8IUG5 2567 aa11.87□□□□□ -0.51
NUP54-205ENST00000507257 IGSF10Q6WRI0 2623 aa11.87□□□□□ -0.51
NUP54-205ENST00000507257 BPY2O14599 106 aa11.86□□□□□ -0.51
NUP54-205ENST00000507257 TMEM254Q8TBM7 123 aa11.86□□□□□ -0.51
NUP54-205ENST00000507257 VPREB1P12018 145 aa11.85□□□□□ -0.51
NUP54-205ENST00000507257 LINC00336Q6ZUF6 198 aa11.85□□□□□ -0.51
NUP54-205ENST00000507257 DAD1P61803 113 aa11.84□□□□□ -0.51
NUP54-205ENST00000507257 LINC00528Q8N1L1 170 aa11.84□□□□□ -0.51
NUP54-205ENST00000507257 FAM208BQ5VWN6 2430 aa11.83□□□□□ -0.52
NUP54-205ENST00000507257 M0R378 163 aa11.83□□□□□ -0.52
NUP54-205ENST00000507257 SCXQ7RTU7 201 aa11.83□□□□□ -0.52
NUP54-205ENST00000507257 WFDC11Q8NEX6 87 aa11.82□□□□□ -0.52
NUP54-205ENST00000507257 XAGE1AQ9HD64 81 aa11.82□□□□□ -0.52
NUP54-205ENST00000507257 IGKV4-1P06312 121 aa11.81□□□□□ -0.52
NUP54-205ENST00000507257 OCR1Q9BZK8 76 aa11.81□□□□□ -0.52
NUP54-205ENST00000507257 KLK12Q9UKR0 248 aa11.81□□□□□ -0.52
NUP54-205ENST00000507257 EGFEM1PQ0D2K5 195 aa11.8□□□□□ -0.52
NUP54-205ENST00000507257 FN1P02751 2386 aaKnown RBP11.8□□□□□ -0.52
NUP54-205ENST00000507257 KRTAP1-1Q07627 177 aa11.8□□□□□ -0.52
NUP54-205ENST00000507257 A0A0U1RQV1 116 aa11.79□□□□□ -0.52
NUP54-205ENST00000507257 SONP18583 2426 aaKnown RBP11.79□□□□□ -0.52
NUP54-205ENST00000507257 A0A1B0GW54 56 aa11.78□□□□□ -0.52
NUP54-205ENST00000507257 APOC4P55056 127 aa11.78□□□□□ -0.52
NUP54-205ENST00000507257 ZNF469Q96JG9 3925 aaPredicted RBP11.78□□□□□ -0.52
NUP54-205ENST00000507257 NF1P21359 2839 aa11.77□□□□□ -0.52
NUP54-205ENST00000507257 Q8NAQ8 132 aa11.77□□□□□ -0.53
NUP54-205ENST00000507257 ITPR3Q14573 2671 aa11.77□□□□□ -0.53
NUP54-205ENST00000507257 NIPBLQ6KC79 2804 aaeCLIP11.77□□□□□ -0.53
NUP54-205ENST00000507257 PRYO14603 147 aa11.76□□□□□ -0.53
NUP54-205ENST00000507257 PIEZO1Q92508 2521 aa11.76□□□□□ -0.53
NUP54-205ENST00000507257 ABCA12Q86UK0 2595 aa11.76□□□□□ -0.53
NUP54-205ENST00000507257 DEFB135Q30KP9 77 aa11.76□□□□□ -0.53
NUP54-205ENST00000507257 CACNA1AO00555 2505 aa11.76□□□□□ -0.53
NUP54-205ENST00000507257 CENPEQ02224 2701 aa11.75□□□□□ -0.53
NUP54-205ENST00000507257 UBR5O95071 2799 aaPredicted RBP11.74□□□□□ -0.53
NUP54-205ENST00000507257 SPART-AS1P0CW21 52 aa11.74□□□□□ -0.53
NUP54-205ENST00000507257 DEFB4AO15263 64 aa11.74□□□□□ -0.53
NUP54-205ENST00000507257 CAMK2N2Q96S95 79 aa11.74□□□□□ -0.53
NUP54-205ENST00000507257 F8WDY8 70 aa11.73□□□□□ -0.53
NUP54-205ENST00000507257 HIGD2BQ4VC39 106 aa11.73□□□□□ -0.53
NUP54-205ENST00000507257 LINC00474Q9P2X8 69 aa11.73□□□□□ -0.53
NUP54-205ENST00000507257 PRB1P04280 392 aa11.72□□□□□ -0.53
NUP54-205ENST00000507257 IGLV5-48A0A075B6I7 105 aa11.72□□□□□ -0.53
NUP54-205ENST00000507257 KRTAP10-3P60369 221 aa11.72□□□□□ -0.53
NUP54-205ENST00000507257 KRTAP26-1Q6PEX3 210 aa11.72□□□□□ -0.53
NUP54-205ENST00000507257 ZFYVE26Q68DK2 2539 aa11.71□□□□□ -0.54
NUP54-205ENST00000507257 LCE6AA0A183 80 aa11.69□□□□□ -0.54
NUP54-205ENST00000507257 FUSP35637 526 aaKnown RBP eCLIP11.69□□□□□ -0.54
NUP54-205ENST00000507257 Q6ZTC4 211 aa11.69□□□□□ -0.54
NUP54-205ENST00000507257 Q6ZRU5 148 aa11.68□□□□□ -0.54
NUP54-205ENST00000507257 Q8N9L7 120 aa11.68□□□□□ -0.54
NUP54-205ENST00000507257 CUBNO60494 3623 aa11.68□□□□□ -0.54
NUP54-205ENST00000507257 ESRGQ1W209 222 aa11.68□□□□□ -0.54
NUP54-205ENST00000507257 KCNQ1DNQ9H478 68 aa11.68□□□□□ -0.54
NUP54-205ENST00000507257 ZNF462Q96JM2 2506 aa11.68□□□□□ -0.54
NUP54-205ENST00000507257 APCP25054 2843 aa11.67□□□□□ -0.54
NUP54-205ENST00000507257 SETD2Q9BYW2 2564 aaPredicted RBP11.67□□□□□ -0.54
NUP54-205ENST00000507257 ANK3Q12955 4377 aaKnown RBP11.67□□□□□ -0.54
NUP54-205ENST00000507257 GCN1Q92616 2671 aaKnown RBP11.66□□□□□ -0.54
NUP54-205ENST00000507257 H3BNG1 76 aa11.66□□□□□ -0.54
NUP54-205ENST00000507257 C15orf56Q8N910 161 aa11.66□□□□□ -0.54
NUP54-205ENST00000507257 HTN3P15516 51 aa11.64□□□□□ -0.55
NUP54-205ENST00000507257 Q8N377 158 aa11.64□□□□□ -0.55
NUP54-205ENST00000507257 FLNAP21333 2647 aaKnown RBP11.64□□□□□ -0.55
NUP54-205ENST00000507257 FAM229BQ4G0N7 80 aa11.64□□□□□ -0.55
NUP54-205ENST00000507257 KPRPQ5T749 579 aaPredicted RBP11.63□□□□□ -0.55
NUP54-205ENST00000507257 C1orf43Q9BWL3 253 aa11.63□□□□□ -0.55
NUP54-205ENST00000507257 C3orf84H3BNL1 204 aa11.61□□□□□ -0.55
NUP54-205ENST00000507257 Q6ZRP5 223 aa11.61□□□□□ -0.55
NUP54-205ENST00000507257 HIGD2AQ9BW72 106 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms