RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 hCG_2014768A0A024R1R8 64 aa9.89□□□□□ -0.83
NUP50-218ENST00000493456 IGLV5-39A0A0G2JS06 123 aa9.89□□□□□ -0.83
NUP50-218ENST00000493456 FAM19A2Q8N3H0 131 aa9.89□□□□□ -0.83
NUP50-218ENST00000493456 Q8NDZ9 215 aa9.88□□□□□ -0.83
NUP50-218ENST00000493456 RPS29P62273 56 aaKnown RBP9.86□□□□□ -0.83
NUP50-218ENST00000493456 SFTA2Q6UW10 78 aa9.86□□□□□ -0.83
NUP50-218ENST00000493456 LINC01546A6NGU7 62 aa9.85□□□□□ -0.83
NUP50-218ENST00000493456 XP32Q5T750 250 aa9.85□□□□□ -0.83
NUP50-218ENST00000493456 IGLC3P0DOY3 106 aa9.84□□□□□ -0.83
NUP50-218ENST00000493456 KIAA1644Q3SXP7 199 aa9.84□□□□□ -0.83
NUP50-218ENST00000493456 LCE2CQ5TA81 110 aa9.84□□□□□ -0.83
NUP50-218ENST00000493456 PRYO14603 147 aa9.82□□□□□ -0.84
NUP50-218ENST00000493456 Q8N377 158 aa9.82□□□□□ -0.84
NUP50-218ENST00000493456 ZNF625Q96I27 306 aaPredicted RBP9.82□□□□□ -0.84
NUP50-218ENST00000493456 CFC1BP0CG36 223 aa9.81□□□□□ -0.84
NUP50-218ENST00000493456 ZNF22P17026 224 aaPredicted RBP9.81□□□□□ -0.84
NUP50-218ENST00000493456 LINC00483Q53H64 154 aa9.81□□□□□ -0.84
NUP50-218ENST00000493456 SLC25A20O43772 301 aa9.79□□□□□ -0.84
NUP50-218ENST00000493456 SMCR5Q8TEV8 140 aa9.79□□□□□ -0.84
NUP50-218ENST00000493456 SPRR1AP35321 89 aa9.78□□□□□ -0.84
NUP50-218ENST00000493456 MT1HP80294 61 aa9.77□□□□□ -0.85
NUP50-218ENST00000493456 FA2HQ7L5A8 372 aa9.77□□□□□ -0.85
NUP50-218ENST00000493456 SSBP3-AS1Q7Z2R9 100 aa9.77□□□□□ -0.85
NUP50-218ENST00000493456 KCNQ1DNQ9H478 68 aa9.77□□□□□ -0.85
NUP50-218ENST00000493456 SMCO4Q9NRQ5 59 aa9.77□□□□□ -0.85
NUP50-218ENST00000493456 ETDCA0A1B0GVM5 59 aa9.76□□□□□ -0.85
NUP50-218ENST00000493456 LINC00158P58513 81 aa9.76□□□□□ -0.85
NUP50-218ENST00000493456 MOBPQ13875 183 aa9.76□□□□□ -0.85
NUP50-218ENST00000493456 KRTAP19-2Q3LHN2 52 aa9.76□□□□□ -0.85
NUP50-218ENST00000493456 TRAV9-1A0A075B6T8 112 aa9.75□□□□□ -0.85
NUP50-218ENST00000493456 KRTAP4-16G5E9R7 235 aaPredicted RBP9.75□□□□□ -0.85
NUP50-218ENST00000493456 NDUFA6P56556 154 aa9.75□□□□□ -0.85
NUP50-218ENST00000493456 IGLV9-49A0A0B4J1Y8 123 aa9.74□□□□□ -0.85
NUP50-218ENST00000493456 GAGE2AQ6NT46 116 aa9.74□□□□□ -0.85
NUP50-218ENST00000493456 NCR3O14931 201 aa9.71□□□□□ -0.86
NUP50-218ENST00000493456 TMEM170BQ5T4T1 132 aa9.71□□□□□ -0.86
NUP50-218ENST00000493456 BOD1L2Q8IYS8 172 aa9.71□□□□□ -0.86
NUP50-218ENST00000493456 A0A0U1RRA0 63 aa9.7□□□□□ -0.86
NUP50-218ENST00000493456 C11orf86A6NJI1 115 aa9.7□□□□□ -0.86
NUP50-218ENST00000493456 S100A12P80511 92 aa9.7□□□□□ -0.86
NUP50-218ENST00000493456 A0A096LNJ9 63 aa9.69□□□□□ -0.86
NUP50-218ENST00000493456 ATP6V1G1O75348 118 aa9.69□□□□□ -0.86
NUP50-218ENST00000493456 LORP23490 312 aaPredicted RBP9.69□□□□□ -0.86
NUP50-218ENST00000493456 B5MCH6 92 aa9.67□□□□□ -0.86
NUP50-218ENST00000493456 COX19Q49B96 90 aa9.67□□□□□ -0.86
NUP50-218ENST00000493456 TRBV10-3A0A0K0K1G6 114 aa9.66□□□□□ -0.86
NUP50-218ENST00000493456 HBDP02042 147 aa9.66□□□□□ -0.86
NUP50-218ENST00000493456 SMIM13P0DJ93 91 aa9.66□□□□□ -0.86
NUP50-218ENST00000493456 KRTAP10-6P60371 365 aaPredicted RBP9.66□□□□□ -0.86
NUP50-218ENST00000493456 BAGE3Q86Y29 109 aa9.66□□□□□ -0.86
NUP50-218ENST00000493456 IGLV8-61A0A075B6I0 122 aa9.65□□□□□ -0.86
NUP50-218ENST00000493456 ERC2-IT1O76042 136 aa9.65□□□□□ -0.86
NUP50-218ENST00000493456 S100PP25815 95 aa9.65□□□□□ -0.86
NUP50-218ENST00000493456 PCOTHQ58A44 107 aa9.65□□□□□ -0.86
NUP50-218ENST00000493456 FABP9Q0Z7S8 132 aa9.64□□□□□ -0.87
NUP50-218ENST00000493456 MIR7-3HGQ8N6C7 128 aa9.64□□□□□ -0.87
NUP50-218ENST00000493456 MEIG1Q5JSS6 88 aa9.63□□□□□ -0.87
NUP50-218ENST00000493456 C9orf153Q5TBE3 101 aa9.63□□□□□ -0.87
NUP50-218ENST00000493456 TMEM223A0PJW6 202 aa9.62□□□□□ -0.87
NUP50-218ENST00000493456 LINC00587B1AMM8 73 aa9.62□□□□□ -0.87
NUP50-218ENST00000493456 Q9BRP9 147 aa9.62□□□□□ -0.87
NUP50-218ENST00000493456 LINC00614P0C842 121 aa9.61□□□□□ -0.87
NUP50-218ENST00000493456 HERV-K104P63124 156 aa9.61□□□□□ -0.87
NUP50-218ENST00000493456 Q6ZRX8 168 aa9.61□□□□□ -0.87
NUP50-218ENST00000493456 CHTOPQ9Y3Y2 248 aaKnown RBP9.6□□□□□ -0.87
NUP50-218ENST00000493456 FLGP20930 4061 aaPredicted RBP9.6□□□□□ -0.87
NUP50-218ENST00000493456 DDTP30046 118 aa9.59□□□□□ -0.87
NUP50-218ENST00000493456 PMCHL1Q16048 86 aa9.59□□□□□ -0.87
NUP50-218ENST00000493456 URB1-AS1Q96HZ7 61 aa9.59□□□□□ -0.87
NUP50-218ENST00000493456 SEC11CQ9BY50 192 aa9.59□□□□□ -0.87
NUP50-218ENST00000493456 LIMD2Q9BT23 127 aa9.58□□□□□ -0.88
NUP50-218ENST00000493456 MAP1LC3CQ9BXW4 147 aa9.58□□□□□ -0.88
NUP50-218ENST00000493456 TRBV10-2A0A0K0K1G8 114 aa9.57□□□□□ -0.88
NUP50-218ENST00000493456 M0R2T5 61 aa9.57□□□□□ -0.88
NUP50-218ENST00000493456 C18orf32Q8TCD1 76 aa9.57□□□□□ -0.88
NUP50-218ENST00000493456 JOSD1Q15040 202 aaPredicted RBP9.56□□□□□ -0.88
NUP50-218ENST00000493456 TRAV12-1A0A0B4J245 112 aa9.54□□□□□ -0.88
NUP50-218ENST00000493456 LOC107984156A0A0G2JMH3 177 aa9.54□□□□□ -0.88
NUP50-218ENST00000493456 C9orf92A6NGG3 77 aa9.54□□□□□ -0.88
NUP50-218ENST00000493456 ARL17AQ8IVW1 177 aa9.54□□□□□ -0.88
NUP50-218ENST00000493456 MYMXA0A1B0GTQ4 84 aa9.53□□□□□ -0.88
NUP50-218ENST00000493456 SPANXB1Q9NS25 103 aaPredicted RBP9.53□□□□□ -0.88
NUP50-218ENST00000493456 TMEM218A2RU14 115 aa9.52□□□□□ -0.89
NUP50-218ENST00000493456 C5orf52A6NGY3 159 aa9.52□□□□□ -0.89
NUP50-218ENST00000493456 UQCC3Q6UW78 93 aa9.52□□□□□ -0.89
NUP50-218ENST00000493456 KRTAP9-7A8MTY7 169 aa9.5□□□□□ -0.89
NUP50-218ENST00000493456 S100A7L2Q5SY68 101 aa9.5□□□□□ -0.89
NUP50-218ENST00000493456 TRAV23DV6A0A075B6W5 121 aa9.49□□□□□ -0.89
NUP50-218ENST00000493456 IGLV6-57P01721 117 aa9.49□□□□□ -0.89
NUP50-218ENST00000493456 TRAPPC1Q9Y5R8 145 aa9.49□□□□□ -0.89
NUP50-218ENST00000493456 CLLU1Q5K131 121 aa9.48□□□□□ -0.89
NUP50-218ENST00000493456 COX6B2Q6YFQ2 88 aa9.48□□□□□ -0.89
NUP50-218ENST00000493456 ST20-AS1Q8NBB2 130 aa9.48□□□□□ -0.89
NUP50-218ENST00000493456 IFI27L1Q96BM0 104 aa9.48□□□□□ -0.89
NUP50-218ENST00000493456 MIEN1Q9BRT3 115 aa9.48□□□□□ -0.89
NUP50-218ENST00000493456 NDUFC2O95298 119 aa9.47□□□□□ -0.89
NUP50-218ENST00000493456 SLC25A34Q6PIV7 304 aa9.47□□□□□ -0.89
NUP50-218ENST00000493456 ZNF73O43830 326 aaPredicted RBP9.46□□□□□ -0.9
NUP50-218ENST00000493456 HRCT1Q6UXD1 115 aa9.46□□□□□ -0.9
NUP50-218ENST00000493456 IFITM2Q01629 132 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms