RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 CDC42SE2Q9NRR3 84 aa-0.66□□□□□ -2.52
CD46-216ENST00000490278 TROQ12816 1431 aaPredicted RBP-0.66□□□□□ -2.52
CD46-216ENST00000490278 NKTRP30414 1462 aaKnown RBP-0.67□□□□□ -2.52
CD46-216ENST00000490278 DNAH8Q96JB1 4490 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 ANKRD36A6QL64 1941 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 MYOM1P52179 1685 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 COL4A6Q14031 1691 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 SNAPC5O75971 98 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 AKAIN1P0CW23 69 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 C9orf153Q5TBE3 101 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 MRPL34Q9BQ48 92 aaKnown RBP-0.67□□□□□ -2.52
CD46-216ENST00000490278 ADGRL2O95490 1459 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 TOP2BQ02880 1626 aa-0.67□□□□□ -2.52
CD46-216ENST00000490278 RANBP2P49792 3224 aaKnown RBP-0.68□□□□□ -2.52
CD46-216ENST00000490278 CRYM-AS1A6NIL9 109 aa-0.68□□□□□ -2.52
CD46-216ENST00000490278 GNGT1P63211 74 aa-0.68□□□□□ -2.52
CD46-216ENST00000490278 PDCD11Q14690 1871 aaKnown RBP-0.68□□□□□ -2.52
CD46-216ENST00000490278 WHAMMP3Q1A5X7 153 aa-0.68□□□□□ -2.52
CD46-216ENST00000490278 KNDC1Q76NI1 1749 aa-0.68□□□□□ -2.52
CD46-216ENST00000490278 XRN1Q8IZH2 1706 aaKnown RBP-0.68□□□□□ -2.52
CD46-216ENST00000490278 NBEAL2Q6ZNJ1 2754 aa-0.68□□□□□ -2.52
CD46-216ENST00000490278 EHBP1L1Q8N3D4 1523 aa-0.69□□□□□ -2.52
CD46-216ENST00000490278 KTN1Q86UP2 1357 aaKnown RBP-0.69□□□□□ -2.52
CD46-216ENST00000490278 DYNC1H1Q14204 4646 aaKnown RBP-0.69□□□□□ -2.52
CD46-216ENST00000490278 FAM186AA6NE01 2351 aa-0.69□□□□□ -2.52
CD46-216ENST00000490278 DSPP15924 2871 aaKnown RBP-0.69□□□□□ -2.52
CD46-216ENST00000490278 SRCAPQ6ZRS2 3230 aa-0.69□□□□□ -2.52
CD46-216ENST00000490278 C7orf77A4D0Y5 90 aa-0.69□□□□□ -2.52
CD46-216ENST00000490278 C12orf57Q99622 126 aa-0.69□□□□□ -2.52
CD46-216ENST00000490278 SHROOM2Q13796 1616 aa-0.69□□□□□ -2.52
CD46-216ENST00000490278 QRICH2Q9H0J4 1663 aa-0.69□□□□□ -2.52
CD46-216ENST00000490278 NUP188Q5SRE5 1749 aa-0.69□□□□□ -2.52
CD46-216ENST00000490278 CEP290O15078 2479 aa-0.7□□□□□ -2.52
CD46-216ENST00000490278 ADAMTS12P58397 1594 aa-0.7□□□□□ -2.52
CD46-216ENST00000490278 SMG6Q86US8 1419 aaKnown RBP-0.7□□□□□ -2.52
CD46-216ENST00000490278 SCAPERQ9BY12 1400 aa-0.7□□□□□ -2.52
CD46-216ENST00000490278 A0A0G2JND7 137 aa-0.7□□□□□ -2.52
CD46-216ENST00000490278 SPTY2D1-AS1A0A0U1RR47 76 aa-0.7□□□□□ -2.52
CD46-216ENST00000490278 PP6455Q8WZ26 134 aa-0.7□□□□□ -2.52
CD46-216ENST00000490278 CDKN2A-AS1Q9UH64 79 aa-0.7□□□□□ -2.52
CD46-216ENST00000490278 A2ML1A8K2U0 1454 aa-0.7□□□□□ -2.52
CD46-216ENST00000490278 A0A0G2JMZ2 1700 aa-0.71□□□□□ -2.52
CD46-216ENST00000490278 UBE2L5PA0A1B0GUS4 154 aa-0.71□□□□□ -2.52
CD46-216ENST00000490278 UBE2L3P68036 154 aaKnown RBP-0.71□□□□□ -2.52
CD46-216ENST00000490278 DPH3P1Q9H4G8 78 aa-0.71□□□□□ -2.52
CD46-216ENST00000490278 PRO1854Q9UHT4 67 aa-0.71□□□□□ -2.52
CD46-216ENST00000490278 SPENQ96T58 3664 aaKnown RBP-0.71□□□□□ -2.52
CD46-216ENST00000490278 C5orf42Q9H799 3197 aa-0.71□□□□□ -2.52
CD46-216ENST00000490278 ANKRD50Q9ULJ7 1429 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 USP9XQ93008 2570 aaPredicted RBP-0.72□□□□□ -2.52
CD46-216ENST00000490278 CUX1P39880 1505 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 TRBV7-7A0A0K0K1E9 115 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 FAM24AA6NFZ4 105 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 F6UZH7 168 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 H0Y9P7 68 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 H3BQF6 201 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 MT1AP04731 61 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 COX6CP09669 75 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 PTPN23Q9H3S7 1636 aa-0.72□□□□□ -2.52
CD46-216ENST00000490278 ROCK2O75116 1388 aaKnown RBP-0.72□□□□□ -2.53
CD46-216ENST00000490278 BPTFQ12830 3046 aa-0.72□□□□□ -2.53
CD46-216ENST00000490278 CCDC141Q6ZP82 1450 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 FRYQ5TBA9 3013 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 CC2D2AQ9P2K1 1620 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 hADV29S1A0JD25 119 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 TMEM218A2RU14 115 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 NDUFA3O95167 84 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 SAA2P0DJI9 122 aaPredicted RBP-0.73□□□□□ -2.53
CD46-216ENST00000490278 DEFA5Q01523 94 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 VAMP8Q9BV40 100 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 HIGD1BQ9P298 99 aa-0.73□□□□□ -2.53
CD46-216ENST00000490278 ACACBO00763 2458 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 CICQ96RK0 1608 aaPredicted RBP-0.74□□□□□ -2.53
CD46-216ENST00000490278 CUL7Q14999 1698 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 NAP1L6A6NFF2 107 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 TMEM262E9PQX1 116 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 CCL22O00626 93 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 ARMS2P0C7Q2 107 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 S100A1P23297 94 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 PSMG4Q5JS54 123 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 SVBPQ8N300 66 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 S4R3F8 94 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 NCOA3Q9Y6Q9 1424 aa-0.74□□□□□ -2.53
CD46-216ENST00000490278 MON2Q7Z3U7 1717 aa-0.75□□□□□ -2.53
CD46-216ENST00000490278 BCORQ6W2J9 1755 aa-0.75□□□□□ -2.53
CD46-216ENST00000490278 SCN11AQ9UI33 1791 aa-0.75□□□□□ -2.53
CD46-216ENST00000490278 DEFB110Q30KQ9 67 aa-0.75□□□□□ -2.53
CD46-216ENST00000490278 RGPD2P0DJD1 1756 aa-0.75□□□□□ -2.53
CD46-216ENST00000490278 IGLC2P0DOY2 106 aa-0.76□□□□□ -2.53
CD46-216ENST00000490278 IGLC3P0DOY3 106 aa-0.76□□□□□ -2.53
CD46-216ENST00000490278 ATP5EP56381 51 aaPredicted RBP-0.76□□□□□ -2.53
CD46-216ENST00000490278 LINC00846Q9NV44 126 aa-0.76□□□□□ -2.53
CD46-216ENST00000490278 PSENENQ9NZ42 101 aa-0.76□□□□□ -2.53
CD46-216ENST00000490278 CACFD1Q9UGQ2 172 aa-0.76□□□□□ -2.53
CD46-216ENST00000490278 EDC4Q6P2E9 1401 aaKnown RBP-0.76□□□□□ -2.53
CD46-216ENST00000490278 TARBP1Q13395 1621 aaKnown RBP-0.76□□□□□ -2.53
CD46-216ENST00000490278 C4AP0C0L4 1744 aa-0.76□□□□□ -2.53
CD46-216ENST00000490278 C4BP0C0L5 1744 aa-0.76□□□□□ -2.53
CD46-216ENST00000490278 KIF20BQ96Q89 1820 aa-0.76□□□□□ -2.53
CD46-216ENST00000490278 DNAH17Q9UFH2 4485 aa-0.77□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms