RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RAB5BP61020 215 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 PAPPA-AS1Q5QFB9 102 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 REG3GQ6UW15 175 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 UNQ6190/PRO20217Q6UXQ8 127 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 FAM19A5Q7Z5A7 132 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 COMMD7Q86VX2 200 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 LINC01561Q8N1V8 128 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 SMIM20Q8N5G0 67 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 LINC01600Q96MT4 127 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 AMELXQ99217 191 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 SIGMAR1Q99720 223 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 TMEM126AQ9H061 195 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 C6orf48Q9UBA6 75 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 TRBV30A0A0K0K1B3 111 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 IGIPA6NJ69 53 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 MT-ND6P03923 174 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 PRSS2P07478 247 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 SEC11AP67812 179 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 KIAA0087Q14695 138 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 LINC00173Q6ZV60 143 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 SEC11CQ9BY50 192 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 PRO0628Q9UI54 55 aa4.19□□□□□ -1.74
CCDC88A-213ENST00000476903 TINCRA0A1B0GVN0 87 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 SRSF9Q13242 221 aaKnown RBP eCLIP4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 KIAA1644Q3SXP7 199 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 ZC2HC1BQ5TFG8 222 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 C2orf82Q6UX34 121 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 PHF5AQ7RTV0 110 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 FAM19A3Q7Z5A8 133 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 TOMM6Q96B49 74 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 TIMM17AQ99595 171 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 GNB1LQ9BYB4 327 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 PSORS1C2Q9UIG4 136 aa4.18□□□□□ -1.74
CCDC88A-213ENST00000476903 FAM168BA1KXE4 195 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 LINC01549A6NIU2 74 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 NDUFC2-KCTD14E9PQ53 114 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 HERVK_113P63121 156 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 CD164Q04900 197 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 OCIAD2Q56VL3 154 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 C1orf137Q5JT78 98 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 Q8IZM0 81 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 SCGB3A1Q96QR1 104 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 TOMM7Q9P0U1 55 aa4.17□□□□□ -1.74
CCDC88A-213ENST00000476903 LINC01546A6NGU7 62 aa4.16□□□□□ -1.74
CCDC88A-213ENST00000476903 UBE2V1Q13404 147 aa4.16□□□□□ -1.74
CCDC88A-213ENST00000476903 RHEBQ15382 184 aa4.16□□□□□ -1.74
CCDC88A-213ENST00000476903 TNXBP22105 4242 aa4.16□□□□□ -1.74
CCDC88A-213ENST00000476903 ATP5LO75964 103 aa4.15□□□□□ -1.75
CCDC88A-213ENST00000476903 IGLV7-43P04211 117 aa4.15□□□□□ -1.75
CCDC88A-213ENST00000476903 CXCL5P42830 114 aa4.15□□□□□ -1.75
CCDC88A-213ENST00000476903 KRTAP10-8P60410 259 aa4.15□□□□□ -1.75
CCDC88A-213ENST00000476903 UBE2BP63146 152 aa4.15□□□□□ -1.75
CCDC88A-213ENST00000476903 RPS10P5Q9NQ39 176 aa4.15□□□□□ -1.75
CCDC88A-213ENST00000476903 SMCO4Q9NRQ5 59 aa4.15□□□□□ -1.75
CCDC88A-213ENST00000476903 CDKN2A-AS1Q9UH64 79 aa4.15□□□□□ -1.75
CCDC88A-213ENST00000476903 F8VRH5 84 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 S100A2P29034 98 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 KRTAP10-12P60413 245 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 FABP9Q0Z7S8 132 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 COL5A1-AS1Q5SY13 56 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 C9orf129Q5T035 196 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 C10orf91Q5T1B1 145 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 KRTAP7-1Q8IUC3 87 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 DIRC1Q969H9 104 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 SS18L2Q9UHA2 77 aa4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 CARHSP1Q9Y2V2 147 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-213ENST00000476903 IGLV5-45A0A087WSX0 123 aa4.13□□□□□ -1.75
CCDC88A-213ENST00000476903 A0A1B0GX51 115 aa4.13□□□□□ -1.75
CCDC88A-213ENST00000476903 SMIM1B2RUZ4 78 aa4.13□□□□□ -1.75
CCDC88A-213ENST00000476903 RPS28P62857 69 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-213ENST00000476903 RPL24P83731 157 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-213ENST00000476903 KRTAP11-1Q8IUC1 163 aa4.13□□□□□ -1.75
CCDC88A-213ENST00000476903 CST9LQ9H4G1 147 aa4.13□□□□□ -1.75
CCDC88A-213ENST00000476903 HSPB8Q9UJY1 196 aa4.13□□□□□ -1.75
CCDC88A-213ENST00000476903 H0Y9J4 135 aa4.12□□□□□ -1.75
CCDC88A-213ENST00000476903 H3BRM9 83 aa4.12□□□□□ -1.75
CCDC88A-213ENST00000476903 COX7B2Q8TF08 81 aa4.12□□□□□ -1.75
CCDC88A-213ENST00000476903 TRAPPC1Q9Y5R8 145 aa4.12□□□□□ -1.75
CCDC88A-213ENST00000476903 OBSCNQ5VST9 7968 aa4.12□□□□□ -1.75
CCDC88A-213ENST00000476903 NUPR1O60356 82 aa4.11□□□□□ -1.75
CCDC88A-213ENST00000476903 SCO1O75880 301 aa4.11□□□□□ -1.75
CCDC88A-213ENST00000476903 SPINK8P0C7L1 97 aa4.11□□□□□ -1.75
CCDC88A-213ENST00000476903 FAM19A1Q7Z5A9 133 aa4.11□□□□□ -1.75
CCDC88A-213ENST00000476903 XAGE1AQ9HD64 81 aa4.11□□□□□ -1.75
CCDC88A-213ENST00000476903 TP73-AS1Q9UF72 201 aa4.11□□□□□ -1.75
CCDC88A-213ENST00000476903 C22orf24Q9Y442 160 aa4.11□□□□□ -1.75
CCDC88A-213ENST00000476903 A0A0A0MQY5 61 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 J3KT08 172 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 J3QR89 54 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 HBDP02042 147 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 APOC3P02656 99 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 IGLC3P0DOY3 106 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 NDUFA6P56556 154 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 MRPL55Q7Z7F7 128 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 SVBPQ8N300 66 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 MPLKIPQ8TAP9 179 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 C18orf32Q8TCD1 76 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 ERG28Q9UKR5 140 aa4.1□□□□□ -1.75
CCDC88A-213ENST00000476903 IGLV1-50A0A075B6I6 118 aa4.09□□□□□ -1.75
CCDC88A-213ENST00000476903 A0A096LNJ9 63 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms