RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 LINC01600Q96MT4 127 aa6.2□□□□□ -1.42
HDAC3-208ENST00000476739 SCGB3A1Q96QR1 104 aa6.2□□□□□ -1.42
HDAC3-208ENST00000476739 NHP2Q9NX24 153 aaKnown RBP6.2□□□□□ -1.42
HDAC3-208ENST00000476739 ZNF561-AS1K7EIQ3 104 aa6.19□□□□□ -1.42
HDAC3-208ENST00000476739 DPM2O94777 84 aa6.19□□□□□ -1.42
HDAC3-208ENST00000476739 IGKCP01834 107 aa6.19□□□□□ -1.42
HDAC3-208ENST00000476739 MT-ATP8P03928 68 aa6.19□□□□□ -1.42
HDAC3-208ENST00000476739 RPS28P62857 69 aaKnown RBP6.19□□□□□ -1.42
HDAC3-208ENST00000476739 ODF1Q14990 250 aa6.19□□□□□ -1.42
HDAC3-208ENST00000476739 Q5VSD8 79 aa6.19□□□□□ -1.42
HDAC3-208ENST00000476739 Q6ZRU5 148 aa6.19□□□□□ -1.42
HDAC3-208ENST00000476739 A0A087WZ39 114 aa6.18□□□□□ -1.42
HDAC3-208ENST00000476739 EPM2AB3EWF7 344 aa6.18□□□□□ -1.42
HDAC3-208ENST00000476739 FXYD2P54710 66 aa6.18□□□□□ -1.42
HDAC3-208ENST00000476739 SPAG11BQ08648 103 aa6.18□□□□□ -1.42
HDAC3-208ENST00000476739 SYCNQ0VAF6 134 aa6.18□□□□□ -1.42
HDAC3-208ENST00000476739 FAM19A3Q7Z5A8 133 aa6.18□□□□□ -1.42
HDAC3-208ENST00000476739 CARD19Q96LW7 228 aa6.18□□□□□ -1.42
HDAC3-208ENST00000476739 IMUPQ9GZP8 106 aa6.18□□□□□ -1.42
HDAC3-208ENST00000476739 A0A0J9YXV3 536 aa6.17□□□□□ -1.42
HDAC3-208ENST00000476739 A0A1B0GX51 115 aa6.17□□□□□ -1.42
HDAC3-208ENST00000476739 PLNP26678 52 aa6.17□□□□□ -1.42
HDAC3-208ENST00000476739 CIRBPQ14011 172 aaKnown RBP6.17□□□□□ -1.42
HDAC3-208ENST00000476739 OR13C6PQ8NH95 151 aa6.17□□□□□ -1.42
HDAC3-208ENST00000476739 CAMK2N2Q96S95 79 aa6.17□□□□□ -1.42
HDAC3-208ENST00000476739 HIST1H4GQ99525 98 aa6.17□□□□□ -1.42
HDAC3-208ENST00000476739 NAA38Q9BRA0 125 aaKnown RBP6.17□□□□□ -1.42
HDAC3-208ENST00000476739 VPS13BQ7Z7G8 4022 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 A0A096LNI7 61 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 IGKV2-24A0A0C4DH68 120 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 MYMXA0A1B0GTQ4 84 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 LINC01549A6NIU2 74 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 KIAA0087Q14695 138 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 PAPPA-AS1Q5QFB9 102 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 C10orf25Q5T742 122 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 LINC00528Q8N1L1 170 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 SPACA4Q8TDM5 124 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 C2orf48Q96LS8 159 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 CDKN2A-AS1Q9UH64 79 aa6.16□□□□□ -1.42
HDAC3-208ENST00000476739 A0A087WYN8 130 aa6.15□□□□□ -1.42
HDAC3-208ENST00000476739 UNQ6190/PRO20217Q6UXQ8 127 aa6.15□□□□□ -1.42
HDAC3-208ENST00000476739 PCP2Q8IVA1 136 aa6.15□□□□□ -1.42
HDAC3-208ENST00000476739 FAM240AA0A1B0GVK7 77 aa6.14□□□□□ -1.43
HDAC3-208ENST00000476739 HERVK_113P63121 156 aa6.14□□□□□ -1.43
HDAC3-208ENST00000476739 PMVKQ15126 192 aa6.14□□□□□ -1.43
HDAC3-208ENST00000476739 C2orf82Q6UX34 121 aa6.14□□□□□ -1.43
HDAC3-208ENST00000476739 TP73-AS1Q9UF72 201 aa6.14□□□□□ -1.43
HDAC3-208ENST00000476739 TRAV12-1A0A0B4J245 112 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 TINCRA0A1B0GVN0 87 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 FAM229AH3BQW9 127 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 J3KT08 172 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 ACYP1P07311 99 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 KRTAP10-4P60372 401 aaPredicted RBP6.13□□□□□ -1.43
HDAC3-208ENST00000476739 MEIG1Q5JSS6 88 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 LINC01561Q8N1V8 128 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 DPH3Q96FX2 82 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 MRPL35Q9NZE8 188 aaKnown RBP6.13□□□□□ -1.43
HDAC3-208ENST00000476739 C6orf48Q9UBA6 75 aa6.13□□□□□ -1.43
HDAC3-208ENST00000476739 IGLV5-45A0A087WSX0 123 aa6.12□□□□□ -1.43
HDAC3-208ENST00000476739 LOC107984640A0A0U1RRK4 108 aa6.12□□□□□ -1.43
HDAC3-208ENST00000476739 NDUFA1O15239 70 aa6.12□□□□□ -1.43
HDAC3-208ENST00000476739 RPL13AP40429 203 aaKnown RBP6.12□□□□□ -1.43
HDAC3-208ENST00000476739 TOMM7Q9P0U1 55 aa6.12□□□□□ -1.43
HDAC3-208ENST00000476739 SMIM1B2RUZ4 78 aa6.11□□□□□ -1.43
HDAC3-208ENST00000476739 PSMB2P49721 201 aa6.11□□□□□ -1.43
HDAC3-208ENST00000476739 C9orf116Q5BN46 136 aaPredicted RBP6.11□□□□□ -1.43
HDAC3-208ENST00000476739 PLAC8Q9NZF1 115 aa6.11□□□□□ -1.43
HDAC3-208ENST00000476739 F8WDY8 70 aa6.1□□□□□ -1.43
HDAC3-208ENST00000476739 K7ERJ3 54 aa6.1□□□□□ -1.43
HDAC3-208ENST00000476739 INAFM2P0DMQ5 153 aa6.1□□□□□ -1.43
HDAC3-208ENST00000476739 RPL18AQ02543 176 aaKnown RBP6.1□□□□□ -1.43
HDAC3-208ENST00000476739 Q8IZM0 81 aa6.1□□□□□ -1.43
HDAC3-208ENST00000476739 A0A1W2PNN7 141 aa6.09□□□□□ -1.43
HDAC3-208ENST00000476739 C11orf86A6NJI1 115 aa6.09□□□□□ -1.43
HDAC3-208ENST00000476739 CCDC179H3BU77 68 aa6.09□□□□□ -1.43
HDAC3-208ENST00000476739 UQCRQO14949 82 aa6.09□□□□□ -1.43
HDAC3-208ENST00000476739 PLA2G1BP04054 148 aaKnown RBP6.09□□□□□ -1.43
HDAC3-208ENST00000476739 SMCPP49901 116 aaPredicted RBP6.09□□□□□ -1.43
HDAC3-208ENST00000476739 C6orf226Q5I0X4 101 aa6.09□□□□□ -1.43
HDAC3-208ENST00000476739 Q6ZRP5 223 aa6.09□□□□□ -1.43
HDAC3-208ENST00000476739 LOC107984156A0A0G2JMH3 177 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 TRBV30A0A0K0K1B3 111 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 TRBV7-7A0A0K0K1E9 115 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 PRSS2P07478 247 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 TLX1NBP0CAT3 122 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 ZNF22P17026 224 aaPredicted RBP6.08□□□□□ -1.44
HDAC3-208ENST00000476739 RPL37AP61513 92 aaKnown RBP6.08□□□□□ -1.44
HDAC3-208ENST00000476739 HERVK_113P61574 105 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 ATXN8Q156A1 80 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 ARL17AQ8IVW1 177 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 LINC00474Q9P2X8 69 aa6.08□□□□□ -1.44
HDAC3-208ENST00000476739 FAM168BA1KXE4 195 aa6.07□□□□□ -1.44
HDAC3-208ENST00000476739 F8VRH5 84 aa6.07□□□□□ -1.44
HDAC3-208ENST00000476739 SLC25A20O43772 301 aa6.07□□□□□ -1.44
HDAC3-208ENST00000476739 TMEM170BQ5T4T1 132 aa6.07□□□□□ -1.44
HDAC3-208ENST00000476739 ANKRD29Q8N6D5 301 aa6.07□□□□□ -1.44
HDAC3-208ENST00000476739 COX7B2Q8TF08 81 aa6.07□□□□□ -1.44
HDAC3-208ENST00000476739 PKIGQ9Y2B9 76 aa6.07□□□□□ -1.44
HDAC3-208ENST00000476739 FLG2Q5D862 2391 aaPredicted RBP6.06□□□□□ -1.44
HDAC3-208ENST00000476739 IGKV2D-26A0A0A0MRZ7 120 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms