RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 HBDP02042 147 aa8.61□□□□□ -1.03
UPF3A-204ENST00000475218 NXT2Q9NPJ8 142 aaKnown RBP8.61□□□□□ -1.03
UPF3A-204ENST00000475218 LINC01546A6NGU7 62 aa8.61□□□□□ -1.03
UPF3A-204ENST00000475218 HSD52Q0P140 79 aa8.61□□□□□ -1.03
UPF3A-204ENST00000475218 REG3GQ6UW15 175 aa8.61□□□□□ -1.03
UPF3A-204ENST00000475218 BOD1L2Q8IYS8 172 aa8.61□□□□□ -1.03
UPF3A-204ENST00000475218 VCX2Q9H322 139 aa8.61□□□□□ -1.03
UPF3A-204ENST00000475218 GAGE2EQ4V326 116 aa8.6□□□□□ -1.03
UPF3A-204ENST00000475218 C9orf129Q5T035 196 aaKnown RBP8.6□□□□□ -1.03
UPF3A-204ENST00000475218 C2orf91Q6ZV80 131 aa8.6□□□□□ -1.03
UPF3A-204ENST00000475218 FAM19A5Q7Z5A7 132 aaPredicted RBP8.6□□□□□ -1.03
UPF3A-204ENST00000475218 CST9LQ9H4G1 147 aa8.6□□□□□ -1.03
UPF3A-204ENST00000475218 GAGE2DQ9UEU5 116 aa8.6□□□□□ -1.03
UPF3A-204ENST00000475218 TRBV30A0A0K0K1B3 111 aa8.59□□□□□ -1.03
UPF3A-204ENST00000475218 OCIAD2Q56VL3 154 aa8.59□□□□□ -1.03
UPF3A-204ENST00000475218 C1orf137Q5JT78 98 aa8.59□□□□□ -1.03
UPF3A-204ENST00000475218 TOMM6Q96B49 74 aa8.59□□□□□ -1.03
UPF3A-204ENST00000475218 CDKN2A-AS1Q9UH64 79 aa8.58□□□□□ -1.04
UPF3A-204ENST00000475218 C9orf118A6NHY6 69 aa8.58□□□□□ -1.04
UPF3A-204ENST00000475218 NDUFC2-KCTD14E9PQ53 114 aa8.58□□□□□ -1.04
UPF3A-204ENST00000475218 TIMM17AQ99595 171 aa8.58□□□□□ -1.04
UPF3A-204ENST00000475218 RNF213Q63HN8 5207 aa8.57□□□□□ -1.04
UPF3A-204ENST00000475218 IGLV7-43P04211 117 aa8.57□□□□□ -1.04
UPF3A-204ENST00000475218 IFI27L1Q96BM0 104 aa8.57□□□□□ -1.04
UPF3A-204ENST00000475218 HIGD1BQ9P298 99 aa8.57□□□□□ -1.04
UPF3A-204ENST00000475218 A0A096LNJ9 63 aa8.56□□□□□ -1.04
UPF3A-204ENST00000475218 GAGE10A6NGK3 116 aa8.56□□□□□ -1.04
UPF3A-204ENST00000475218 Q6ZVH6 145 aa8.56□□□□□ -1.04
UPF3A-204ENST00000475218 Q8IZM0 81 aa8.56□□□□□ -1.04
UPF3A-204ENST00000475218 TOMM7Q9P0U1 55 aa8.56□□□□□ -1.04
UPF3A-204ENST00000475218 M0QXV9 152 aa8.55□□□□□ -1.04
UPF3A-204ENST00000475218 ATP5LO75964 103 aa8.55□□□□□ -1.04
UPF3A-204ENST00000475218 ERASQ7Z444 233 aa8.55□□□□□ -1.04
UPF3A-204ENST00000475218 H0Y8G0 127 aa8.54□□□□□ -1.04
UPF3A-204ENST00000475218 HERVK_113P63121 156 aa8.54□□□□□ -1.04
UPF3A-204ENST00000475218 VPS25Q9BRG1 176 aa8.54□□□□□ -1.04
UPF3A-204ENST00000475218 K7EP34 96 aa8.53□□□□□ -1.04
UPF3A-204ENST00000475218 SCGB3A1Q96QR1 104 aa8.53□□□□□ -1.04
UPF3A-204ENST00000475218 SMIM1B2RUZ4 78 aa8.53□□□□□ -1.04
UPF3A-204ENST00000475218 IGLV5-45A0A087WSX0 123 aa8.52□□□□□ -1.05
UPF3A-204ENST00000475218 PRSS2P07478 247 aa8.52□□□□□ -1.05
UPF3A-204ENST00000475218 KRTAP1-4P0C5Y4 121 aa8.52□□□□□ -1.05
UPF3A-204ENST00000475218 C6orf226Q5I0X4 101 aa8.52□□□□□ -1.05
UPF3A-204ENST00000475218 PAPPA-AS1Q5QFB9 102 aa8.52□□□□□ -1.05
UPF3A-204ENST00000475218 H0Y9J4 135 aa8.51□□□□□ -1.05
UPF3A-204ENST00000475218 CKS1BP61024 79 aa8.51□□□□□ -1.05
UPF3A-204ENST00000475218 GEMIN7Q9H840 131 aaKnown RBP8.51□□□□□ -1.05
UPF3A-204ENST00000475218 XAGE1AQ9HD64 81 aa8.51□□□□□ -1.05
UPF3A-204ENST00000475218 TAL2Q16559 108 aa8.5□□□□□ -1.05
UPF3A-204ENST00000475218 PRR26Q8N8Z3 221 aa8.5□□□□□ -1.05
UPF3A-204ENST00000475218 DIRC1Q969H9 104 aa8.5□□□□□ -1.05
UPF3A-204ENST00000475218 TINCRA0A1B0GVN0 87 aa8.5□□□□□ -1.05
UPF3A-204ENST00000475218 F8VRH5 84 aa8.5□□□□□ -1.05
UPF3A-204ENST00000475218 SMIM13P0DJ93 91 aa8.5□□□□□ -1.05
UPF3A-204ENST00000475218 FABP2P12104 132 aa8.5□□□□□ -1.05
UPF3A-204ENST00000475218 A0A1W2PPM0 123 aa8.49□□□□□ -1.05
UPF3A-204ENST00000475218 DPM2O94777 84 aa8.49□□□□□ -1.05
UPF3A-204ENST00000475218 C22orf24Q9Y442 160 aa8.49□□□□□ -1.05
UPF3A-204ENST00000475218 IGKCP01834 107 aa8.48□□□□□ -1.05
UPF3A-204ENST00000475218 UBE2BP63146 152 aa8.48□□□□□ -1.05
UPF3A-204ENST00000475218 TP73-AS1Q9UF72 201 aa8.48□□□□□ -1.05
UPF3A-204ENST00000475218 H3BUT2 72 aa8.47□□□□□ -1.05
UPF3A-204ENST00000475218 NMUP48645 174 aa8.47□□□□□ -1.05
UPF3A-204ENST00000475218 LPAP08519 4548 aa8.47□□□□□ -1.05
UPF3A-204ENST00000475218 LINC01549A6NIU2 74 aa8.46□□□□□ -1.05
UPF3A-204ENST00000475218 SPINK8P0C7L1 97 aa8.46□□□□□ -1.05
UPF3A-204ENST00000475218 PLNP26678 52 aa8.46□□□□□ -1.05
UPF3A-204ENST00000475218 PMVKQ15126 192 aa8.46□□□□□ -1.05
UPF3A-204ENST00000475218 COX7B2Q8TF08 81 aa8.46□□□□□ -1.05
UPF3A-204ENST00000475218 SPCS1Q9Y6A9 102 aa8.46□□□□□ -1.05
UPF3A-204ENST00000475218 CXCL5P42830 114 aa8.45□□□□□ -1.06
UPF3A-204ENST00000475218 TRAV12-1A0A0B4J245 112 aa8.45□□□□□ -1.06
UPF3A-204ENST00000475218 PCP2Q8IVA1 136 aa8.44□□□□□ -1.06
UPF3A-204ENST00000475218 CHTOPQ9Y3Y2 248 aaKnown RBP8.44□□□□□ -1.06
UPF3A-204ENST00000475218 J3QR89 54 aa8.43□□□□□ -1.06
UPF3A-204ENST00000475218 MRPL55Q7Z7F7 128 aaKnown RBP8.43□□□□□ -1.06
UPF3A-204ENST00000475218 CEND1Q8N111 149 aa8.43□□□□□ -1.06
UPF3A-204ENST00000475218 IGLV5-39A0A0G2JS06 123 aa8.42□□□□□ -1.06
UPF3A-204ENST00000475218 F8W1H4 67 aa8.42□□□□□ -1.06
UPF3A-204ENST00000475218 ZNF861PO60384 105 aa8.42□□□□□ -1.06
UPF3A-204ENST00000475218 SCGB1A1P11684 91 aa8.42□□□□□ -1.06
UPF3A-204ENST00000475218 IGLV1-50A0A075B6I6 118 aa8.41□□□□□ -1.06
UPF3A-204ENST00000475218 ZNF22P17026 224 aaPredicted RBP8.41□□□□□ -1.06
UPF3A-204ENST00000475218 E9PLD3 99 aa8.4□□□□□ -1.06
UPF3A-204ENST00000475218 LINC00167Q96N53 147 aa8.4□□□□□ -1.06
UPF3A-204ENST00000475218 IGLV5-37A0A075B6J1 123 aa8.4□□□□□ -1.07
UPF3A-204ENST00000475218 RPL37AP8A6NKH3 93 aa8.39□□□□□ -1.07
UPF3A-204ENST00000475218 RAB37Q96AX2 223 aa8.39□□□□□ -1.07
UPF3A-204ENST00000475218 IGKV2D-26A0A0A0MRZ7 120 aa8.38□□□□□ -1.07
UPF3A-204ENST00000475218 A0A1B0GWB2 263 aa8.38□□□□□ -1.07
UPF3A-204ENST00000475218 FXYD2P54710 66 aa8.38□□□□□ -1.07
UPF3A-204ENST00000475218 BCE1O60756 84 aa8.38□□□□□ -1.07
UPF3A-204ENST00000475218 LCE2DQ5TA82 110 aaPredicted RBP8.38□□□□□ -1.07
UPF3A-204ENST00000475218 KRTAP13-1Q8IUC0 172 aa8.38□□□□□ -1.07
UPF3A-204ENST00000475218 C11orf86A6NJI1 115 aa8.37□□□□□ -1.07
UPF3A-204ENST00000475218 Q8NDZ9 215 aa8.37□□□□□ -1.07
UPF3A-204ENST00000475218 NHP2Q9NX24 153 aaKnown RBP8.36□□□□□ -1.07
UPF3A-204ENST00000475218 A0A087X002 238 aa8.35□□□□□ -1.07
UPF3A-204ENST00000475218 LYRM7Q5U5X0 104 aa8.35□□□□□ -1.07
UPF3A-204ENST00000475218 MYMXA0A1B0GTQ4 84 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 338.9 ms