RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 TSPAN13O95857 204 aa9.83□□□□□ -0.84
USP40-212ENST00000473191 RPL28P46779 137 aaKnown RBP9.83□□□□□ -0.84
USP40-212ENST00000473191 BAGE3Q86Y29 109 aa9.83□□□□□ -0.84
USP40-212ENST00000473191 VPREB1P12018 145 aa9.82□□□□□ -0.84
USP40-212ENST00000473191 PRR4Q16378 134 aa9.82□□□□□ -0.84
USP40-212ENST00000473191 NKAPP1Q8N9T2 125 aa9.82□□□□□ -0.84
USP40-212ENST00000473191 SND1-IT1Q9HBX3 110 aa9.82□□□□□ -0.84
USP40-212ENST00000473191 ERG28Q9UKR5 140 aa9.82□□□□□ -0.84
USP40-212ENST00000473191 TMEM238C9JI98 176 aa9.8□□□□□ -0.84
USP40-212ENST00000473191 KRTAP13-2Q52LG2 175 aa9.8□□□□□ -0.84
USP40-212ENST00000473191 TMEM170BQ5T4T1 132 aa9.8□□□□□ -0.84
USP40-212ENST00000473191 PRLHP81277 87 aa9.79□□□□□ -0.84
USP40-212ENST00000473191 UBE2AP49459 152 aa9.78□□□□□ -0.84
USP40-212ENST00000473191 SERF1AO75920 110 aa9.77□□□□□ -0.85
USP40-212ENST00000473191 TYMSOSQ8TAI1 123 aa9.77□□□□□ -0.85
USP40-212ENST00000473191 A0A0U1RRA0 63 aa9.76□□□□□ -0.85
USP40-212ENST00000473191 CRYGAP11844 174 aa9.76□□□□□ -0.85
USP40-212ENST00000473191 CHCHD1Q96BP2 118 aaKnown RBP9.76□□□□□ -0.85
USP40-212ENST00000473191 CHTOPQ9Y3Y2 248 aaKnown RBP9.76□□□□□ -0.85
USP40-212ENST00000473191 M0R378 163 aa9.75□□□□□ -0.85
USP40-212ENST00000473191 HSBP1O75506 76 aa9.75□□□□□ -0.85
USP40-212ENST00000473191 COA6Q5JTJ3 125 aaKnown RBP9.75□□□□□ -0.85
USP40-212ENST00000473191 TMEM126AQ9H061 195 aa9.75□□□□□ -0.85
USP40-212ENST00000473191 MUC2Q02817 5179 aa9.75□□□□□ -0.85
USP40-212ENST00000473191 TMEM223A0PJW6 202 aa9.74□□□□□ -0.85
USP40-212ENST00000473191 S100A2P29034 98 aa9.74□□□□□ -0.85
USP40-212ENST00000473191 SNRPEP62304 92 aaKnown RBP9.74□□□□□ -0.85
USP40-212ENST00000473191 COX17Q14061 63 aa9.74□□□□□ -0.85
USP40-212ENST00000473191 FAM19A1Q7Z5A9 133 aa9.74□□□□□ -0.85
USP40-212ENST00000473191 FAM19A2Q8N3H0 131 aa9.72□□□□□ -0.85
USP40-212ENST00000473191 IFI27L1Q96BM0 104 aa9.72□□□□□ -0.85
USP40-212ENST00000473191 C5orf52A6NGY3 159 aa9.71□□□□□ -0.86
USP40-212ENST00000473191 LINC00158P58513 81 aa9.71□□□□□ -0.86
USP40-212ENST00000473191 LINC00310P59036 64 aa9.71□□□□□ -0.86
USP40-212ENST00000473191 RETNLBQ9BQ08 111 aa9.71□□□□□ -0.86
USP40-212ENST00000473191 RPL24P83731 157 aaKnown RBP9.7□□□□□ -0.86
USP40-212ENST00000473191 HIST3H2BBQ8N257 126 aa9.7□□□□□ -0.86
USP40-212ENST00000473191 TRAV12-1A0A0B4J245 112 aa9.69□□□□□ -0.86
USP40-212ENST00000473191 SMIM13P0DJ93 91 aa9.69□□□□□ -0.86
USP40-212ENST00000473191 PLEKHB2Q96CS7 222 aa9.68□□□□□ -0.86
USP40-212ENST00000473191 FAM229BQ4G0N7 80 aa9.67□□□□□ -0.86
USP40-212ENST00000473191 C3orf22Q8N5N4 141 aa9.67□□□□□ -0.86
USP40-212ENST00000473191 H0Y8G0 127 aa9.66□□□□□ -0.86
USP40-212ENST00000473191 FABP4P15090 132 aa9.66□□□□□ -0.86
USP40-212ENST00000473191 NCR3O14931 201 aa9.65□□□□□ -0.86
USP40-212ENST00000473191 LEPROTL1O95214 131 aa9.65□□□□□ -0.86
USP40-212ENST00000473191 TSPEAR-AS2P59090 65 aa9.65□□□□□ -0.86
USP40-212ENST00000473191 SFTA2Q6UW10 78 aa9.65□□□□□ -0.86
USP40-212ENST00000473191 LINC00304Q8N9R0 145 aa9.65□□□□□ -0.86
USP40-212ENST00000473191 HIGD2AQ9BW72 106 aa9.65□□□□□ -0.86
USP40-212ENST00000473191 MIR7-3HGQ8N6C7 128 aa9.64□□□□□ -0.87
USP40-212ENST00000473191 HIST1H2BLQ99880 126 aa9.64□□□□□ -0.87
USP40-212ENST00000473191 HSPB8Q9UJY1 196 aa9.64□□□□□ -0.87
USP40-212ENST00000473191 IGKV2D-26A0A0A0MRZ7 120 aa9.63□□□□□ -0.87
USP40-212ENST00000473191 MEIG1Q5JSS6 88 aa9.63□□□□□ -0.87
USP40-212ENST00000473191 BOD1L2Q8IYS8 172 aa9.62□□□□□ -0.87
USP40-212ENST00000473191 NDUFA12Q9UI09 145 aa9.61□□□□□ -0.87
USP40-212ENST00000473191 AKR1D1P51857 326 aa9.6□□□□□ -0.87
USP40-212ENST00000473191 DAND5Q8N907 189 aa9.6□□□□□ -0.87
USP40-212ENST00000473191 SPRR4Q96PI1 79 aa9.6□□□□□ -0.87
USP40-212ENST00000473191 PMCHL2Q9BQD1 86 aa9.6□□□□□ -0.87
USP40-212ENST00000473191 MUC17Q685J3 4493 aa9.6□□□□□ -0.87
USP40-212ENST00000473191 KRTDAPP60985 99 aa9.59□□□□□ -0.87
USP40-212ENST00000473191 MAP1LC3CQ9BXW4 147 aa9.59□□□□□ -0.87
USP40-212ENST00000473191 KRTAP4-16G5E9R7 235 aaPredicted RBP9.58□□□□□ -0.88
USP40-212ENST00000473191 SPRR1AP35321 89 aa9.58□□□□□ -0.88
USP40-212ENST00000473191 TRBV10-3A0A0K0K1G6 114 aa9.57□□□□□ -0.88
USP40-212ENST00000473191 LOC105371267A0A1B0GV96 52 aa9.57□□□□□ -0.88
USP40-212ENST00000473191 HERV-K104P63124 156 aa9.57□□□□□ -0.88
USP40-212ENST00000473191 PRYO14603 147 aa9.56□□□□□ -0.88
USP40-212ENST00000473191 KCNQ1DNQ9H478 68 aa9.56□□□□□ -0.88
USP40-212ENST00000473191 MYMXA0A1B0GTQ4 84 aa9.55□□□□□ -0.88
USP40-212ENST00000473191 C20orf202A1L168 122 aa9.55□□□□□ -0.88
USP40-212ENST00000473191 LEPROTO15243 131 aa9.55□□□□□ -0.88
USP40-212ENST00000473191 C3orf79P0CE67 100 aa9.55□□□□□ -0.88
USP40-212ENST00000473191 SMCR5Q8TEV8 140 aa9.55□□□□□ -0.88
USP40-212ENST00000473191 PPDPFQ9H3Y8 114 aa9.55□□□□□ -0.88
USP40-212ENST00000473191 LINC00337Q8N6G1 96 aa9.54□□□□□ -0.88
USP40-212ENST00000473191 SYS1-DBNDD2H3BUS1 97 aa9.53□□□□□ -0.88
USP40-212ENST00000473191 PET117Q6UWS5 81 aa9.53□□□□□ -0.88
USP40-212ENST00000473191 IGLV7-46A0A075B6I9 117 aa9.52□□□□□ -0.89
USP40-212ENST00000473191 J3QQQ9 107 aa9.52□□□□□ -0.89
USP40-212ENST00000473191 EIF4EBP3O60516 100 aaPredicted RBP9.52□□□□□ -0.89
USP40-212ENST00000473191 ERC2-IT1O76042 136 aa9.52□□□□□ -0.89
USP40-212ENST00000473191 SCGB1D1O95968 90 aa9.52□□□□□ -0.89
USP40-212ENST00000473191 LOC107984156A0A0G2JMH3 177 aa9.5□□□□□ -0.89
USP40-212ENST00000473191 ETDCA0A1B0GVM5 59 aa9.5□□□□□ -0.89
USP40-212ENST00000473191 B5MCH6 92 aa9.5□□□□□ -0.89
USP40-212ENST00000473191 TPRXLQ17RH7 258 aa9.5□□□□□ -0.89
USP40-212ENST00000473191 ARL17AQ8IVW1 177 aa9.5□□□□□ -0.89
USP40-212ENST00000473191 LINC00587B1AMM8 73 aa9.49□□□□□ -0.89
USP40-212ENST00000473191 DPM2O94777 84 aa9.49□□□□□ -0.89
USP40-212ENST00000473191 IGKCP01834 107 aa9.49□□□□□ -0.89
USP40-212ENST00000473191 PLNP26678 52 aa9.49□□□□□ -0.89
USP40-212ENST00000473191 SOSTDC1Q6X4U4 206 aa9.49□□□□□ -0.89
USP40-212ENST00000473191 Q8NBF4 154 aa9.49□□□□□ -0.89
USP40-212ENST00000473191 DDTP30046 118 aa9.48□□□□□ -0.89
USP40-212ENST00000473191 NPC2P61916 151 aa9.48□□□□□ -0.89
USP40-212ENST00000473191 JOSD1Q15040 202 aaPredicted RBP9.48□□□□□ -0.89
USP40-212ENST00000473191 Q9BRP9 147 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms