RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TP73-AS1Q9UF72 201 aa9.29□□□□□ -0.92
COL9A3-209ENST00000469852 HSBP1L1C9JCN9 74 aa9.28□□□□□ -0.92
COL9A3-209ENST00000469852 ADAMTSL4-AS1Q5T5F5 129 aa9.28□□□□□ -0.92
COL9A3-209ENST00000469852 LITAFQ99732 161 aa9.28□□□□□ -0.92
COL9A3-209ENST00000469852 PHF5AQ7RTV0 110 aaKnown RBP9.26□□□□□ -0.93
COL9A3-209ENST00000469852 Q8N1X5 172 aa9.26□□□□□ -0.93
COL9A3-209ENST00000469852 PAM16Q9Y3D7 125 aa9.26□□□□□ -0.93
COL9A3-209ENST00000469852 VPS13BQ7Z7G8 4022 aa9.26□□□□□ -0.93
COL9A3-209ENST00000469852 LINC00528Q8N1L1 170 aa9.25□□□□□ -0.93
COL9A3-209ENST00000469852 LINC00587B1AMM8 73 aa9.24□□□□□ -0.93
COL9A3-209ENST00000469852 EIF4EBP3O60516 100 aaPredicted RBP9.24□□□□□ -0.93
COL9A3-209ENST00000469852 SPATA45Q537H7 98 aa9.24□□□□□ -0.93
COL9A3-209ENST00000469852 VAMP8Q9BV40 100 aa9.24□□□□□ -0.93
COL9A3-209ENST00000469852 LOC105371267A0A1B0GV96 52 aa9.23□□□□□ -0.93
COL9A3-209ENST00000469852 M0QXV9 152 aa9.23□□□□□ -0.93
COL9A3-209ENST00000469852 NPC2P61916 151 aa9.23□□□□□ -0.93
COL9A3-209ENST00000469852 SOSTDC1Q6X4U4 206 aa9.23□□□□□ -0.93
COL9A3-209ENST00000469852 KRTAP11-1Q8IUC1 163 aa9.23□□□□□ -0.93
COL9A3-209ENST00000469852 PLA2G2DQ9UNK4 145 aa9.23□□□□□ -0.93
COL9A3-209ENST00000469852 TIMM17BO60830 172 aa9.22□□□□□ -0.93
COL9A3-209ENST00000469852 VPREB1P12018 145 aa9.22□□□□□ -0.93
COL9A3-209ENST00000469852 SCGB1D4Q6XE38 83 aa9.22□□□□□ -0.93
COL9A3-209ENST00000469852 C22orf24Q9Y442 160 aa9.22□□□□□ -0.93
COL9A3-209ENST00000469852 COX8AP10176 69 aa9.21□□□□□ -0.94
COL9A3-209ENST00000469852 BOD1L2Q8IYS8 172 aa9.21□□□□□ -0.94
COL9A3-209ENST00000469852 C14orf144Q96I85 54 aa9.21□□□□□ -0.94
COL9A3-209ENST00000469852 IGLV5-37A0A075B6J1 123 aa9.2□□□□□ -0.94
COL9A3-209ENST00000469852 KRTAP10-4P60372 401 aaPredicted RBP9.2□□□□□ -0.94
COL9A3-209ENST00000469852 Q5VSD8 79 aa9.2□□□□□ -0.94
COL9A3-209ENST00000469852 LOC107984156A0A0G2JMH3 177 aa9.19□□□□□ -0.94
COL9A3-209ENST00000469852 PRR3P79522 188 aaKnown RBP9.19□□□□□ -0.94
COL9A3-209ENST00000469852 ARL17AQ8IVW1 177 aa9.19□□□□□ -0.94
COL9A3-209ENST00000469852 GAGE10A6NGK3 116 aa9.18□□□□□ -0.94
COL9A3-209ENST00000469852 MRPL55Q7Z7F7 128 aaKnown RBP9.18□□□□□ -0.94
COL9A3-209ENST00000469852 LINC00308Q8TCZ7 52 aa9.18□□□□□ -0.94
COL9A3-209ENST00000469852 C7orf33Q8WU49 177 aa9.18□□□□□ -0.94
COL9A3-209ENST00000469852 HERC1Q15751 4861 aa9.17□□□□□ -0.94
COL9A3-209ENST00000469852 TMEM238C9JI98 176 aa9.17□□□□□ -0.94
COL9A3-209ENST00000469852 NKAPP1Q8N9T2 125 aa9.17□□□□□ -0.94
COL9A3-209ENST00000469852 LINC00167Q96N53 147 aa9.17□□□□□ -0.94
COL9A3-209ENST00000469852 SPANXDQ9BXN6 97 aa9.17□□□□□ -0.94
COL9A3-209ENST00000469852 SPANXCQ9NY87 97 aa9.17□□□□□ -0.94
COL9A3-209ENST00000469852 SRRM2Q9UQ35 2752 aaKnown RBP9.17□□□□□ -0.94
COL9A3-209ENST00000469852 NCR3O14931 201 aa9.16□□□□□ -0.94
COL9A3-209ENST00000469852 DLEU1O43261 78 aa9.16□□□□□ -0.94
COL9A3-209ENST00000469852 RPL37AP61513 92 aaKnown RBP9.16□□□□□ -0.94
COL9A3-209ENST00000469852 RPL37AP8A6NKH3 93 aa9.15□□□□□ -0.94
COL9A3-209ENST00000469852 FAM229AH3BQW9 127 aa9.15□□□□□ -0.94
COL9A3-209ENST00000469852 RPL24P83731 157 aaKnown RBP9.15□□□□□ -0.94
COL9A3-209ENST00000469852 PSORS1C2Q9UIG4 136 aa9.15□□□□□ -0.94
COL9A3-209ENST00000469852 PKHD1L1Q86WI1 4243 aa9.15□□□□□ -0.94
COL9A3-209ENST00000469852 UBE2BP63146 152 aa9.14□□□□□ -0.95
COL9A3-209ENST00000469852 SLC25A34Q6PIV7 304 aa9.14□□□□□ -0.95
COL9A3-209ENST00000469852 C2orf91Q6ZV80 131 aa9.14□□□□□ -0.95
COL9A3-209ENST00000469852 MIEN1Q9BRT3 115 aa9.14□□□□□ -0.95
COL9A3-209ENST00000469852 LBHQ53QV2 105 aaPredicted RBP9.13□□□□□ -0.95
COL9A3-209ENST00000469852 MUSTN1Q8IVN3 82 aa9.13□□□□□ -0.95
COL9A3-209ENST00000469852 SPANXB1Q9NS25 103 aaPredicted RBP9.13□□□□□ -0.95
COL9A3-209ENST00000469852 IGKV2-28A0A075B6P5 120 aa9.12□□□□□ -0.95
COL9A3-209ENST00000469852 IGKV2D-28P01615 120 aa9.12□□□□□ -0.95
COL9A3-209ENST00000469852 SMIM6P0DI80 62 aa9.12□□□□□ -0.95
COL9A3-209ENST00000469852 HNRNPA3P51991 378 aaKnown RBP9.12□□□□□ -0.95
COL9A3-209ENST00000469852 IGLV1-50A0A075B6I6 118 aa9.11□□□□□ -0.95
COL9A3-209ENST00000469852 M0R378 163 aa9.11□□□□□ -0.95
COL9A3-209ENST00000469852 NDUFC2O95298 119 aa9.11□□□□□ -0.95
COL9A3-209ENST00000469852 PLA2G1BP04054 148 aaKnown RBP9.11□□□□□ -0.95
COL9A3-209ENST00000469852 S100A12P80511 92 aa9.1□□□□□ -0.95
COL9A3-209ENST00000469852 SRSF9Q13242 221 aaKnown RBP eCLIP9.1□□□□□ -0.95
COL9A3-209ENST00000469852 Q6ZVH6 145 aa9.1□□□□□ -0.95
COL9A3-209ENST00000469852 TRBV10-3A0A0K0K1G6 114 aa9.09□□□□□ -0.95
COL9A3-209ENST00000469852 IFITM1P13164 125 aa9.09□□□□□ -0.95
COL9A3-209ENST00000469852 C1orf137Q5JT78 98 aa9.09□□□□□ -0.95
COL9A3-209ENST00000469852 HIGD1BQ9P298 99 aa9.08□□□□□ -0.96
COL9A3-209ENST00000469852 TRBV10-2A0A0K0K1G8 114 aa9.07□□□□□ -0.96
COL9A3-209ENST00000469852 HIST1H4GQ99525 98 aa9.07□□□□□ -0.96
COL9A3-209ENST00000469852 PRO1933Q9H354 126 aa9.07□□□□□ -0.96
COL9A3-209ENST00000469852 PPDPFQ9H3Y8 114 aa9.07□□□□□ -0.96
COL9A3-209ENST00000469852 INAFM2P0DMQ5 153 aa9.06□□□□□ -0.96
COL9A3-209ENST00000469852 LINC00337Q8N6G1 96 aa9.06□□□□□ -0.96
COL9A3-209ENST00000469852 DMBT1Q9UGM3 2413 aaPredicted RBP9.05□□□□□ -0.96
COL9A3-209ENST00000469852 IGLV6-57P01721 117 aa9.05□□□□□ -0.96
COL9A3-209ENST00000469852 DDTP30046 118 aa9.05□□□□□ -0.96
COL9A3-209ENST00000469852 TMEM126AQ9H061 195 aa9.05□□□□□ -0.96
COL9A3-209ENST00000469852 A4D1N5 150 aa9.04□□□□□ -0.96
COL9A3-209ENST00000469852 IGLV7-43P04211 117 aa9.04□□□□□ -0.96
COL9A3-209ENST00000469852 C12orf57Q99622 126 aa9.04□□□□□ -0.96
COL9A3-209ENST00000469852 UQCR10Q9UDW1 63 aa9.04□□□□□ -0.96
COL9A3-209ENST00000469852 REG3GQ6UW15 175 aa9.03□□□□□ -0.96
COL9A3-209ENST00000469852 COPS9Q8WXC6 57 aa9.03□□□□□ -0.96
COL9A3-209ENST00000469852 KCNQ1DNQ9H478 68 aa9.03□□□□□ -0.96
COL9A3-209ENST00000469852 MYCBP2O75592 4640 aa9.02□□□□□ -0.97
COL9A3-209ENST00000469852 BCE1O60756 84 aa9.02□□□□□ -0.97
COL9A3-209ENST00000469852 S100A7L2Q5SY68 101 aa9.02□□□□□ -0.97
COL9A3-209ENST00000469852 PRYO14603 147 aa9.01□□□□□ -0.97
COL9A3-209ENST00000469852 OR13C6PQ8NH95 151 aa9.01□□□□□ -0.97
COL9A3-209ENST00000469852 SPRR1AP35321 89 aa9□□□□□ -0.97
COL9A3-209ENST00000469852 KRTAP13-1Q8IUC0 172 aa9□□□□□ -0.97
COL9A3-209ENST00000469852 LINC00518Q8N0U6 118 aa9□□□□□ -0.97
COL9A3-209ENST00000469852 LRP1Q07954 4544 aaKnown RBP9□□□□□ -0.97
COL9A3-209ENST00000469852 FAT3Q8TDW7 4589 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms