RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 LINC01549A6NIU2 74 aa6.95□□□□□ -1.3
HDAC3-204ENST00000469207 C11orf86A6NJI1 115 aa6.94□□□□□ -1.3
HDAC3-204ENST00000469207 LINC00158P58513 81 aa6.94□□□□□ -1.3
HDAC3-204ENST00000469207 COX17Q14061 63 aa6.94□□□□□ -1.3
HDAC3-204ENST00000469207 S100PP25815 95 aa6.93□□□□□ -1.3
HDAC3-204ENST00000469207 CLLU1Q5K131 121 aa6.93□□□□□ -1.3
HDAC3-204ENST00000469207 TMEM170BQ5T4T1 132 aa6.93□□□□□ -1.3
HDAC3-204ENST00000469207 BAGE3Q86Y29 109 aa6.93□□□□□ -1.3
HDAC3-204ENST00000469207 CTAG1AP78358 180 aa6.92□□□□□ -1.3
HDAC3-204ENST00000469207 KRTAP13-3Q3SY46 172 aa6.92□□□□□ -1.3
HDAC3-204ENST00000469207 SPAG11AQ6PDA7 123 aa6.92□□□□□ -1.3
HDAC3-204ENST00000469207 Q8NBF4 154 aa6.92□□□□□ -1.3
HDAC3-204ENST00000469207 SMCR5Q8TEV8 140 aa6.92□□□□□ -1.3
HDAC3-204ENST00000469207 LINC00614P0C842 121 aa6.91□□□□□ -1.3
HDAC3-204ENST00000469207 C4orf48Q5BLP8 95 aa6.91□□□□□ -1.3
HDAC3-204ENST00000469207 LINC00337Q8N6G1 96 aa6.91□□□□□ -1.3
HDAC3-204ENST00000469207 C18orf32Q8TCD1 76 aa6.91□□□□□ -1.3
HDAC3-204ENST00000469207 NCR3O14931 201 aa6.89□□□□□ -1.31
HDAC3-204ENST00000469207 HBDP02042 147 aa6.89□□□□□ -1.31
HDAC3-204ENST00000469207 SMIM13P0DJ93 91 aa6.89□□□□□ -1.31
HDAC3-204ENST00000469207 ASB16-AS1Q495Z4 193 aa6.89□□□□□ -1.31
HDAC3-204ENST00000469207 FP248Q71RG6 208 aaPredicted RBP6.89□□□□□ -1.31
HDAC3-204ENST00000469207 IFITM2Q01629 132 aa6.88□□□□□ -1.31
HDAC3-204ENST00000469207 COX19Q49B96 90 aa6.88□□□□□ -1.31
HDAC3-204ENST00000469207 UQCC3Q6UW78 93 aa6.88□□□□□ -1.31
HDAC3-204ENST00000469207 BOD1L2Q8IYS8 172 aa6.88□□□□□ -1.31
HDAC3-204ENST00000469207 SEC11CQ9BY50 192 aa6.88□□□□□ -1.31
HDAC3-204ENST00000469207 RPS10P5Q9NQ39 176 aa6.88□□□□□ -1.31
HDAC3-204ENST00000469207 KRTAP4-16G5E9R7 235 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-204ENST00000469207 CHTOPQ9Y3Y2 248 aaKnown RBP6.87□□□□□ -1.31
HDAC3-204ENST00000469207 TRAPPC1Q9Y5R8 145 aa6.87□□□□□ -1.31
HDAC3-204ENST00000469207 TMEM223A0PJW6 202 aa6.86□□□□□ -1.31
HDAC3-204ENST00000469207 PRYO14603 147 aa6.86□□□□□ -1.31
HDAC3-204ENST00000469207 ERC2-IT1O76042 136 aa6.86□□□□□ -1.31
HDAC3-204ENST00000469207 SPRR1AP35321 89 aa6.86□□□□□ -1.31
HDAC3-204ENST00000469207 GAGE2AQ6NT46 116 aa6.86□□□□□ -1.31
HDAC3-204ENST00000469207 MIR7-3HGQ8N6C7 128 aa6.86□□□□□ -1.31
HDAC3-204ENST00000469207 TRBV10-3A0A0K0K1G6 114 aa6.85□□□□□ -1.31
HDAC3-204ENST00000469207 LINC01547P58512 204 aaPredicted RBP6.85□□□□□ -1.31
HDAC3-204ENST00000469207 KCNQ1DNQ9H478 68 aa6.85□□□□□ -1.31
HDAC3-204ENST00000469207 ZNF706Q9Y5V0 76 aaPredicted RBP6.85□□□□□ -1.31
HDAC3-204ENST00000469207 IGLV9-49A0A0B4J1Y8 123 aa6.84□□□□□ -1.31
HDAC3-204ENST00000469207 ETDCA0A1B0GVM5 59 aa6.84□□□□□ -1.31
HDAC3-204ENST00000469207 ATP6V1G1O75348 118 aa6.84□□□□□ -1.31
HDAC3-204ENST00000469207 SPINK1P00995 79 aa6.84□□□□□ -1.31
HDAC3-204ENST00000469207 MEIG1Q5JSS6 88 aa6.84□□□□□ -1.31
HDAC3-204ENST00000469207 MOBPQ13875 183 aa6.83□□□□□ -1.32
HDAC3-204ENST00000469207 LINC00483Q53H64 154 aa6.83□□□□□ -1.32
HDAC3-204ENST00000469207 C10orf91Q5T1B1 145 aa6.83□□□□□ -1.32
HDAC3-204ENST00000469207 SFTA2Q6UW10 78 aa6.83□□□□□ -1.32
HDAC3-204ENST00000469207 B5MCH6 92 aa6.82□□□□□ -1.32
HDAC3-204ENST00000469207 LCE2DQ5TA82 110 aaPredicted RBP6.82□□□□□ -1.32
HDAC3-204ENST00000469207 COMMD7Q86VX2 200 aa6.82□□□□□ -1.32
HDAC3-204ENST00000469207 Q8N377 158 aa6.82□□□□□ -1.32
HDAC3-204ENST00000469207 SEC61BP60468 96 aaKnown RBP6.81□□□□□ -1.32
HDAC3-204ENST00000469207 FSIP2Q5CZC0 6907 aa6.8□□□□□ -1.32
HDAC3-204ENST00000469207 RHEBQ15382 184 aa6.8□□□□□ -1.32
HDAC3-204ENST00000469207 IFI27L1Q96BM0 104 aa6.8□□□□□ -1.32
HDAC3-204ENST00000469207 Q9BRP9 147 aa6.8□□□□□ -1.32
HDAC3-204ENST00000469207 LCE2CQ5TA81 110 aa6.79□□□□□ -1.32
HDAC3-204ENST00000469207 NDUFA12Q9UI09 145 aa6.79□□□□□ -1.32
HDAC3-204ENST00000469207 TRAV12-1A0A0B4J245 112 aa6.78□□□□□ -1.32
HDAC3-204ENST00000469207 TSPEAR-AS2P59090 65 aa6.78□□□□□ -1.32
HDAC3-204ENST00000469207 SSBP3-AS1Q7Z2R9 100 aa6.78□□□□□ -1.32
HDAC3-204ENST00000469207 FAM19A2Q8N3H0 131 aa6.78□□□□□ -1.32
HDAC3-204ENST00000469207 DDTP30046 118 aa6.77□□□□□ -1.33
HDAC3-204ENST00000469207 HERV-K104P63124 156 aa6.77□□□□□ -1.33
HDAC3-204ENST00000469207 XP32Q5T750 250 aa6.77□□□□□ -1.33
HDAC3-204ENST00000469207 CRCT1Q9UGL9 99 aa6.77□□□□□ -1.33
HDAC3-204ENST00000469207 H0Y8G0 127 aa6.76□□□□□ -1.33
HDAC3-204ENST00000469207 MYMXA0A1B0GTQ4 84 aa6.75□□□□□ -1.33
HDAC3-204ENST00000469207 SLC25A20O43772 301 aa6.75□□□□□ -1.33
HDAC3-204ENST00000469207 KRTAP19-2Q3LHN2 52 aa6.75□□□□□ -1.33
HDAC3-204ENST00000469207 ST20-AS1Q8NBB2 130 aa6.75□□□□□ -1.33
HDAC3-204ENST00000469207 APOC3P02656 99 aa6.74□□□□□ -1.33
HDAC3-204ENST00000469207 RPS29P62273 56 aaKnown RBP6.74□□□□□ -1.33
HDAC3-204ENST00000469207 Q6ZRX8 168 aa6.74□□□□□ -1.33
HDAC3-204ENST00000469207 CHCHD1Q96BP2 118 aaKnown RBP6.74□□□□□ -1.33
HDAC3-204ENST00000469207 LOC107984156A0A0G2JMH3 177 aa6.73□□□□□ -1.33
HDAC3-204ENST00000469207 LINC00587B1AMM8 73 aa6.73□□□□□ -1.33
HDAC3-204ENST00000469207 EIF4EBP3O60516 100 aaPredicted RBP6.73□□□□□ -1.33
HDAC3-204ENST00000469207 S100A12P80511 92 aa6.73□□□□□ -1.33
HDAC3-204ENST00000469207 C9orf153Q5TBE3 101 aa6.73□□□□□ -1.33
HDAC3-204ENST00000469207 ARL17AQ8IVW1 177 aa6.73□□□□□ -1.33
HDAC3-204ENST00000469207 MAP1LC3CQ9BXW4 147 aa6.73□□□□□ -1.33
HDAC3-204ENST00000469207 TRBV10-2A0A0K0K1G8 114 aa6.72□□□□□ -1.33
HDAC3-204ENST00000469207 NPC2P61916 151 aa6.72□□□□□ -1.33
HDAC3-204ENST00000469207 YPEL4Q96NS1 127 aa6.72□□□□□ -1.33
HDAC3-204ENST00000469207 LEPROTO15243 131 aa6.71□□□□□ -1.34
HDAC3-204ENST00000469207 IGLV6-57P01721 117 aa6.71□□□□□ -1.34
HDAC3-204ENST00000469207 S100A7L2Q5SY68 101 aa6.71□□□□□ -1.34
HDAC3-204ENST00000469207 HRCT1Q6UXD1 115 aa6.71□□□□□ -1.34
HDAC3-204ENST00000469207 SOSTDC1Q6X4U4 206 aa6.71□□□□□ -1.34
HDAC3-204ENST00000469207 C9orf92A6NGG3 77 aa6.7□□□□□ -1.34
HDAC3-204ENST00000469207 HSBP1O75506 76 aa6.7□□□□□ -1.34
HDAC3-204ENST00000469207 MT1HP80294 61 aa6.7□□□□□ -1.34
HDAC3-204ENST00000469207 PCOTHQ58A44 107 aa6.7□□□□□ -1.34
HDAC3-204ENST00000469207 PMCHL2Q9BQD1 86 aa6.7□□□□□ -1.34
HDAC3-204ENST00000469207 J3QQQ9 107 aa6.69□□□□□ -1.34
HDAC3-204ENST00000469207 ADAMTSL4-AS1Q5T5F5 129 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 298.8 ms