RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 C11orf72Q8NBR9 251 aa5.76□□□□□ -1.49
TMEM39A-202ENST00000438581 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.76□□□□□ -1.49
TMEM39A-202ENST00000438581 IGHV3OR16-9A0A0B4J2B5 98 aa5.76□□□□□ -1.49
TMEM39A-202ENST00000438581 UPK3BQ9BT76 320 aa5.76□□□□□ -1.49
TMEM39A-202ENST00000438581 ETDCA0A1B0GVM5 59 aa5.75□□□□□ -1.49
TMEM39A-202ENST00000438581 M0R2N4 97 aa5.75□□□□□ -1.49
TMEM39A-202ENST00000438581 KLK9Q2XQG4 91 aa5.75□□□□□ -1.49
TMEM39A-202ENST00000438581 LINC00242Q5T6M2 205 aa5.75□□□□□ -1.49
TMEM39A-202ENST00000438581 CHCHD7Q9BUK0 85 aa5.75□□□□□ -1.49
TMEM39A-202ENST00000438581 ATP11AUNQ6ZP68 121 aa5.74□□□□□ -1.49
TMEM39A-202ENST00000438581 PHF5AQ7RTV0 110 aaKnown RBP5.74□□□□□ -1.49
TMEM39A-202ENST00000438581 CCKP06307 115 aa5.74□□□□□ -1.49
TMEM39A-202ENST00000438581 ESRGQ1W209 222 aa5.74□□□□□ -1.49
TMEM39A-202ENST00000438581 LINC00315P59091 139 aa5.74□□□□□ -1.49
TMEM39A-202ENST00000438581 LINC00308Q8TCZ7 52 aa5.74□□□□□ -1.49
TMEM39A-202ENST00000438581 SPENQ96T58 3664 aaKnown RBP5.73□□□□□ -1.49
TMEM39A-202ENST00000438581 CELA1Q9UNI1 258 aa5.73□□□□□ -1.49
TMEM39A-202ENST00000438581 NBEAL1Q6ZS30 2694 aa5.73□□□□□ -1.49
TMEM39A-202ENST00000438581 H0YGX0 51 aa5.73□□□□□ -1.49
TMEM39A-202ENST00000438581 KLKP1Q107X0 134 aa5.73□□□□□ -1.49
TMEM39A-202ENST00000438581 ASB16-AS1Q495Z4 193 aa5.73□□□□□ -1.49
TMEM39A-202ENST00000438581 TEX49A0A1B0GTD5 131 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 COX6A2Q02221 97 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 ORMDL1Q9P0S3 153 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 IGLV4-69A0A075B6H9 119 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 IBA57-AS1B1ANH7 110 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 M0R378 163 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 ERC2-IT1O76042 136 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 HAMPP81172 84 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 KRTAP1-1Q07627 177 aa5.72□□□□□ -1.49
TMEM39A-202ENST00000438581 SYCNQ0VAF6 134 aa5.71□□□□□ -1.5
TMEM39A-202ENST00000438581 SPATA3Q8NHX4 192 aa5.71□□□□□ -1.5
TMEM39A-202ENST00000438581 UBL5Q9BZL1 73 aa5.71□□□□□ -1.5
TMEM39A-202ENST00000438581 UTP20O75691 2785 aaKnown RBP5.71□□□□□ -1.5
TMEM39A-202ENST00000438581 H0Y9J4 135 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 TSPEAR-AS2P59090 65 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 CYP4F30PQ9H0H9 118 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 LAMA5O15230 3695 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 LST1O00453 97 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 A0A087X002 238 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 DIRC1Q969H9 104 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 CR1P17927 2039 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 ZANQ9Y493 2812 aa5.7□□□□□ -1.5
TMEM39A-202ENST00000438581 ZFHX4Q86UP3 3567 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 SMIM1B2RUZ4 78 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 WFDC10BQ8IUB3 73 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 FAM30AQ9NZY2 134 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 C9orf116Q5BN46 136 aaPredicted RBP5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 UNQ6190/PRO20217Q6UXQ8 127 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 IGKV3D-7A0A0C4DH55 119 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 Q1T7F1 81 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 AMELXQ99217 191 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 A0A0A0MQY5 61 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 CYSRT1A8MQ03 144 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 KRTAP10-3P60369 221 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 NTM-AS1Q6ZSK4 140 aa5.69□□□□□ -1.5
TMEM39A-202ENST00000438581 NBEAL2Q6ZNJ1 2754 aa5.68□□□□□ -1.5
TMEM39A-202ENST00000438581 PSPHP1O15172 72 aa5.68□□□□□ -1.5
TMEM39A-202ENST00000438581 LY6G6CO95867 125 aa5.68□□□□□ -1.5
TMEM39A-202ENST00000438581 NOTCH2NLQ7Z3S9 236 aa5.68□□□□□ -1.5
TMEM39A-202ENST00000438581 C20orf197Q8N268 126 aa5.68□□□□□ -1.5
TMEM39A-202ENST00000438581 LYPD5Q6UWN5 251 aa5.67□□□□□ -1.5
TMEM39A-202ENST00000438581 HIGD2AQ9BW72 106 aa5.67□□□□□ -1.5
TMEM39A-202ENST00000438581 SLPIP03973 132 aa5.67□□□□□ -1.5
TMEM39A-202ENST00000438581 KIAA0087Q14695 138 aa5.67□□□□□ -1.5
TMEM39A-202ENST00000438581 C6orf99Q4VX62 202 aa5.67□□□□□ -1.5
TMEM39A-202ENST00000438581 C14orf177Q52M58 125 aa5.67□□□□□ -1.5
TMEM39A-202ENST00000438581 SCXQ7RTU7 201 aa5.67□□□□□ -1.5
TMEM39A-202ENST00000438581 WFDC9Q8NEX5 89 aa5.67□□□□□ -1.5
TMEM39A-202ENST00000438581 A0A087WZ39 114 aa5.66□□□□□ -1.5
TMEM39A-202ENST00000438581 IGKV2-28A0A075B6P5 120 aa5.66□□□□□ -1.5
TMEM39A-202ENST00000438581 A8MUN3 132 aa5.66□□□□□ -1.5
TMEM39A-202ENST00000438581 IGKV2D-28P01615 120 aa5.66□□□□□ -1.5
TMEM39A-202ENST00000438581 CDK2AP2O75956 126 aa5.66□□□□□ -1.5
TMEM39A-202ENST00000438581 COX7BP24311 80 aa5.66□□□□□ -1.5
TMEM39A-202ENST00000438581 Q8IZM0 81 aa5.66□□□□□ -1.5
TMEM39A-202ENST00000438581 FP248Q71RG6 208 aaPredicted RBP5.65□□□□□ -1.5
TMEM39A-202ENST00000438581 ADAMTSL4-AS1Q5T5F5 129 aa5.65□□□□□ -1.5
TMEM39A-202ENST00000438581 LINC00588Q9Y4M8 146 aa5.65□□□□□ -1.51
TMEM39A-202ENST00000438581 C6orf223Q8N319 242 aa5.64□□□□□ -1.51
TMEM39A-202ENST00000438581 MDFIQ99750 246 aa5.64□□□□□ -1.51
TMEM39A-202ENST00000438581 LIMD2Q9BT23 127 aa5.64□□□□□ -1.51
TMEM39A-202ENST00000438581 A0A096LNI7 61 aa5.64□□□□□ -1.51
TMEM39A-202ENST00000438581 LINC01546A6NGU7 62 aa5.64□□□□□ -1.51
TMEM39A-202ENST00000438581 PRR3P79522 188 aaKnown RBP5.64□□□□□ -1.51
TMEM39A-202ENST00000438581 CRYBG3Q68DQ2 2970 aa5.64□□□□□ -1.51
TMEM39A-202ENST00000438581 A0A1B0GUV1 79 aa5.64□□□□□ -1.51
TMEM39A-202ENST00000438581 Q8N3U1 123 aa5.63□□□□□ -1.51
TMEM39A-202ENST00000438581 APCP25054 2843 aa5.63□□□□□ -1.51
TMEM39A-202ENST00000438581 H7BZZ5 65 aa5.63□□□□□ -1.51
TMEM39A-202ENST00000438581 C14orf132Q9NPU4 83 aa5.63□□□□□ -1.51
TMEM39A-202ENST00000438581 RPL37AP8A6NKH3 93 aa5.62□□□□□ -1.51
TMEM39A-202ENST00000438581 Q8NAQ8 132 aa5.62□□□□□ -1.51
TMEM39A-202ENST00000438581 NSD1Q96L73 2696 aaPredicted RBP5.62□□□□□ -1.51
TMEM39A-202ENST00000438581 H3BQ85 93 aa5.62□□□□□ -1.51
TMEM39A-202ENST00000438581 C19orf73Q9NVV2 129 aa5.62□□□□□ -1.51
TMEM39A-202ENST00000438581 MPLKIPQ8TAP9 179 aa5.62□□□□□ -1.51
TMEM39A-202ENST00000438581 SMIM11BQ8TCY0 68 aa5.62□□□□□ -1.51
TMEM39A-202ENST00000438581 NUPR2A6NF83 97 aa5.61□□□□□ -1.51
TMEM39A-202ENST00000438581 GIG44P09565 113 aaPredicted RBP5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms