RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 FUSP35637 526 aaKnown RBP eCLIP14.78□□□□□ -0.04
CPSF4-204ENST00000436336 TMEM238LA0A1B0GVL6 79 aa14.77□□□□□ -0.05
CPSF4-204ENST00000436336 A6NJY4 79 aa14.77□□□□□ -0.05
CPSF4-204ENST00000436336 C16orf90A8MZG2 172 aa14.77□□□□□ -0.05
CPSF4-204ENST00000436336 KRTAP10-2P60368 255 aa14.77□□□□□ -0.05
CPSF4-204ENST00000436336 LINC01620Q4KN68 170 aa14.77□□□□□ -0.05
CPSF4-204ENST00000436336 SDIM1Q6ZPB5 146 aa14.77□□□□□ -0.05
CPSF4-204ENST00000436336 PGPEP1Q9NXJ5 209 aa14.77□□□□□ -0.05
CPSF4-204ENST00000436336 HECTD4Q9Y4D8 3996 aa14.76□□□□□ -0.05
CPSF4-204ENST00000436336 A4D1N5 150 aa14.76□□□□□ -0.05
CPSF4-204ENST00000436336 A0A096LNI7 61 aa14.75□□□□□ -0.05
CPSF4-204ENST00000436336 C9orf129Q5T035 196 aaKnown RBP14.75□□□□□ -0.05
CPSF4-204ENST00000436336 PKD1P98161 4303 aa14.74□□□□□ -0.05
CPSF4-204ENST00000436336 NDUFC2O95298 119 aa14.72□□□□□ -0.05
CPSF4-204ENST00000436336 BATFQ16520 125 aa14.72□□□□□ -0.05
CPSF4-204ENST00000436336 IGKV2-24A0A0C4DH68 120 aa14.71□□□□□ -0.05
CPSF4-204ENST00000436336 DNAH5Q8TE73 4624 aa14.71□□□□□ -0.06
CPSF4-204ENST00000436336 RYR3Q15413 4870 aa14.71□□□□□ -0.06
CPSF4-204ENST00000436336 SNHG12Q9BXW3 62 aa14.7□□□□□ -0.06
CPSF4-204ENST00000436336 LINC00474Q9P2X8 69 aa14.7□□□□□ -0.06
CPSF4-204ENST00000436336 NHP2Q9NX24 153 aaKnown RBP14.69□□□□□ -0.06
CPSF4-204ENST00000436336 PLA2G2DQ9UNK4 145 aa14.69□□□□□ -0.06
CPSF4-204ENST00000436336 Q8NDZ9 215 aa14.69□□□□□ -0.06
CPSF4-204ENST00000436336 A6NDN8 102 aa14.68□□□□□ -0.06
CPSF4-204ENST00000436336 A0A1B0GVY2 172 aa14.67□□□□□ -0.06
CPSF4-204ENST00000436336 CHTF8P0CG12 524 aa14.67□□□□□ -0.06
CPSF4-204ENST00000436336 CFC1BP0CG36 223 aa14.67□□□□□ -0.06
CPSF4-204ENST00000436336 CFC1P0CG37 223 aa14.67□□□□□ -0.06
CPSF4-204ENST00000436336 VPREB1P12018 145 aa14.66□□□□□ -0.06
CPSF4-204ENST00000436336 A0A0B4J2C4 111 aa14.66□□□□□ -0.06
CPSF4-204ENST00000436336 A0A1B0GWB2 263 aa14.66□□□□□ -0.06
CPSF4-204ENST00000436336 IGKV2-28A0A075B6P5 120 aa14.65□□□□□ -0.06
CPSF4-204ENST00000436336 IGKV2D-28P01615 120 aa14.65□□□□□ -0.06
CPSF4-204ENST00000436336 FAM168BA1KXE4 195 aa14.63□□□□□ -0.07
CPSF4-204ENST00000436336 PRR3P79522 188 aaKnown RBP14.63□□□□□ -0.07
CPSF4-204ENST00000436336 SERTAD4-AS1Q5TG53 156 aa14.63□□□□□ -0.07
CPSF4-204ENST00000436336 RAB37Q96AX2 223 aa14.63□□□□□ -0.07
CPSF4-204ENST00000436336 SPACA4Q8TDM5 124 aa14.63□□□□□ -0.07
CPSF4-204ENST00000436336 TRBV10-2A0A0K0K1G8 114 aa14.62□□□□□ -0.07
CPSF4-204ENST00000436336 NCR3O14931 201 aa14.62□□□□□ -0.07
CPSF4-204ENST00000436336 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.62□□□□□ -0.07
CPSF4-204ENST00000436336 IGLV5-37A0A075B6J1 123 aa14.61□□□□□ -0.07
CPSF4-204ENST00000436336 PANO1I0J062 215 aa14.61□□□□□ -0.07
CPSF4-204ENST00000436336 TRAV13-2A0A0B4J235 113 aa14.61□□□□□ -0.07
CPSF4-204ENST00000436336 K7ERJ3 54 aa14.61□□□□□ -0.07
CPSF4-204ENST00000436336 LINC00337Q8N6G1 96 aa14.61□□□□□ -0.07
CPSF4-204ENST00000436336 NKAPP1Q8N9T2 125 aa14.61□□□□□ -0.07
CPSF4-204ENST00000436336 FAM19A5Q7Z5A7 132 aaPredicted RBP14.6□□□□□ -0.07
CPSF4-204ENST00000436336 KRTAP7-1Q8IUC3 87 aa14.6□□□□□ -0.07
CPSF4-204ENST00000436336 PRO1854Q9UHT4 67 aa14.6□□□□□ -0.07
CPSF4-204ENST00000436336 A0A1W2PNN7 141 aa14.59□□□□□ -0.07
CPSF4-204ENST00000436336 M0R378 163 aa14.58□□□□□ -0.07
CPSF4-204ENST00000436336 DPH3Q96FX2 82 aa14.58□□□□□ -0.07
CPSF4-204ENST00000436336 KRTAP10-1P60331 282 aa14.57□□□□□ -0.08
CPSF4-204ENST00000436336 C22orf24Q9Y442 160 aa14.57□□□□□ -0.08
CPSF4-204ENST00000436336 COL5A1-AS1Q5SY13 56 aa14.56□□□□□ -0.08
CPSF4-204ENST00000436336 OR13C6PQ8NH95 151 aa14.56□□□□□ -0.08
CPSF4-204ENST00000436336 DNAH8Q96JB1 4490 aa14.56□□□□□ -0.08
CPSF4-204ENST00000436336 S100A7L2Q5SY68 101 aa14.55□□□□□ -0.08
CPSF4-204ENST00000436336 RPL13AP40429 203 aaKnown RBP14.55□□□□□ -0.08
CPSF4-204ENST00000436336 TMEM126AQ9H061 195 aa14.55□□□□□ -0.08
CPSF4-204ENST00000436336 A0A087WYN8 130 aa14.53□□□□□ -0.08
CPSF4-204ENST00000436336 M0QXV9 152 aa14.53□□□□□ -0.08
CPSF4-204ENST00000436336 MRPL55Q7Z7F7 128 aaKnown RBP14.53□□□□□ -0.08
CPSF4-204ENST00000436336 C7orf33Q8WU49 177 aa14.53□□□□□ -0.08
CPSF4-204ENST00000436336 EPM2AB3EWF7 344 aa14.52□□□□□ -0.08
CPSF4-204ENST00000436336 Q6ZSA8 131 aa14.52□□□□□ -0.08
CPSF4-204ENST00000436336 IGLV6-57P01721 117 aa14.52□□□□□ -0.09
CPSF4-204ENST00000436336 PLAC8Q9NZF1 115 aa14.51□□□□□ -0.09
CPSF4-204ENST00000436336 FAM30AQ9NZY2 134 aa14.51□□□□□ -0.09
CPSF4-204ENST00000436336 TRBV10-3A0A0K0K1G6 114 aa14.5□□□□□ -0.09
CPSF4-204ENST00000436336 LBHQ53QV2 105 aaPredicted RBP14.5□□□□□ -0.09
CPSF4-204ENST00000436336 H7C2G1 150 aa14.49□□□□□ -0.09
CPSF4-204ENST00000436336 TAX1BP3O14907 124 aa14.49□□□□□ -0.09
CPSF4-204ENST00000436336 LINC00167Q96N53 147 aa14.49□□□□□ -0.09
CPSF4-204ENST00000436336 GAGE10A6NGK3 116 aa14.49□□□□□ -0.09
CPSF4-204ENST00000436336 TSPAN13O95857 204 aa14.48□□□□□ -0.09
CPSF4-204ENST00000436336 Q1RN00 199 aa14.48□□□□□ -0.09
CPSF4-204ENST00000436336 PKHD1P08F94 4074 aa14.47□□□□□ -0.09
CPSF4-204ENST00000436336 IGLV1-50A0A075B6I6 118 aa14.46□□□□□ -0.1
CPSF4-204ENST00000436336 PHF5AQ7RTV0 110 aaKnown RBP14.46□□□□□ -0.1
CPSF4-204ENST00000436336 CBY1Q9Y3M2 126 aa14.46□□□□□ -0.1
CPSF4-204ENST00000436336 SMIM11BQ8TCY0 68 aa14.44□□□□□ -0.1
CPSF4-204ENST00000436336 RPL37AP8A6NKH3 93 aa14.44□□□□□ -0.1
CPSF4-204ENST00000436336 DYNC1H1Q14204 4646 aaKnown RBP14.43□□□□□ -0.1
CPSF4-204ENST00000436336 TRAV23DV6A0A075B6W5 121 aa14.43□□□□□ -0.1
CPSF4-204ENST00000436336 C9orf118A6NHY6 69 aa14.43□□□□□ -0.1
CPSF4-204ENST00000436336 RPL28P46779 137 aaKnown RBP14.43□□□□□ -0.1
CPSF4-204ENST00000436336 CIRBP-AS1Q8TBR5 109 aa14.43□□□□□ -0.1
CPSF4-204ENST00000436336 LRP1BQ9NZR2 4599 aa14.43□□□□□ -0.1
CPSF4-204ENST00000436336 KCNQ1DNQ9H478 68 aa14.42□□□□□ -0.1
CPSF4-204ENST00000436336 SCXQ7RTU7 201 aa14.41□□□□□ -0.1
CPSF4-204ENST00000436336 UBE2BP63146 152 aa14.41□□□□□ -0.1
CPSF4-204ENST00000436336 H3BUT2 72 aa14.4□□□□□ -0.1
CPSF4-204ENST00000436336 PSMB2P49721 201 aa14.4□□□□□ -0.1
CPSF4-204ENST00000436336 NAA38Q9BRA0 125 aaKnown RBP14.4□□□□□ -0.1
CPSF4-204ENST00000436336 PRYO14603 147 aa14.39□□□□□ -0.11
CPSF4-204ENST00000436336 TRIAP1O43715 76 aa14.38□□□□□ -0.11
CPSF4-204ENST00000436336 ZNF73O43830 326 aaPredicted RBP14.37□□□□□ -0.11
CPSF4-204ENST00000436336 C6orf99Q4VX62 202 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms