RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 Q8NDZ9 215 aa13.74□□□□□ -0.21
USP39-203ENST00000409470 TMEM126AQ9H061 195 aa13.74□□□□□ -0.21
USP39-203ENST00000409470 Q6ZRU5 148 aa13.74□□□□□ -0.21
USP39-203ENST00000409470 TEX49A0A1B0GTD5 131 aa13.73□□□□□ -0.21
USP39-203ENST00000409470 S100A7L2Q5SY68 101 aa13.72□□□□□ -0.21
USP39-203ENST00000409470 UPK3BQ9BT76 320 aa13.71□□□□□ -0.21
USP39-203ENST00000409470 XAGE1AQ9HD64 81 aa13.71□□□□□ -0.21
USP39-203ENST00000409470 A0A087WYN8 130 aa13.71□□□□□ -0.22
USP39-203ENST00000409470 DNAH9Q9NYC9 4486 aa13.7□□□□□ -0.22
USP39-203ENST00000409470 DNAL4O96015 105 aa13.69□□□□□ -0.22
USP39-203ENST00000409470 BAALC-AS2P0C853 105 aa13.69□□□□□ -0.22
USP39-203ENST00000409470 F8WDY8 70 aa13.68□□□□□ -0.22
USP39-203ENST00000409470 RMI2Q96E14 147 aa13.68□□□□□ -0.22
USP39-203ENST00000409470 STAB2Q8WWQ8 2551 aa13.67□□□□□ -0.22
USP39-203ENST00000409470 RPL18AQ02543 176 aaKnown RBP13.67□□□□□ -0.22
USP39-203ENST00000409470 SYCNQ0VAF6 134 aa13.67□□□□□ -0.22
USP39-203ENST00000409470 COL7A1Q02388 2944 aa13.67□□□□□ -0.22
USP39-203ENST00000409470 NDUFC2-KCTD14E9PQ53 114 aa13.66□□□□□ -0.22
USP39-203ENST00000409470 LECT2O14960 151 aa13.66□□□□□ -0.22
USP39-203ENST00000409470 GAGE2EQ4V326 116 aa13.64□□□□□ -0.23
USP39-203ENST00000409470 GAGE2DQ9UEU5 116 aa13.64□□□□□ -0.23
USP39-203ENST00000409470 USP17L23D6RBM5 183 aa13.63□□□□□ -0.23
USP39-203ENST00000409470 C6orf99Q4VX62 202 aa13.63□□□□□ -0.23
USP39-203ENST00000409470 CASC10Q5T4H9 136 aa13.63□□□□□ -0.23
USP39-203ENST00000409470 UBE2DNLQ8IWF7 75 aa13.62□□□□□ -0.23
USP39-203ENST00000409470 IGLV6-57P01721 117 aa13.61□□□□□ -0.23
USP39-203ENST00000409470 SIGMAR1Q99720 223 aa13.61□□□□□ -0.23
USP39-203ENST00000409470 APLNQ9ULZ1 77 aa13.61□□□□□ -0.23
USP39-203ENST00000409470 NHLRC4P0CG21 123 aaPredicted RBP13.61□□□□□ -0.23
USP39-203ENST00000409470 CDIP1Q9H305 208 aa13.61□□□□□ -0.23
USP39-203ENST00000409470 Q6ZRP5 223 aa13.59□□□□□ -0.23
USP39-203ENST00000409470 TRBV10-3A0A0K0K1G6 114 aa13.58□□□□□ -0.24
USP39-203ENST00000409470 VPREB1P12018 145 aa13.58□□□□□ -0.24
USP39-203ENST00000409470 SLPIP03973 132 aa13.57□□□□□ -0.24
USP39-203ENST00000409470 C22orf24Q9Y442 160 aa13.57□□□□□ -0.24
USP39-203ENST00000409470 A0A1B0GX51 115 aa13.57□□□□□ -0.24
USP39-203ENST00000409470 DNAH1Q9P2D7 4330 aa13.56□□□□□ -0.24
USP39-203ENST00000409470 Q8N814 137 aa13.56□□□□□ -0.24
USP39-203ENST00000409470 SNCGO76070 127 aa13.56□□□□□ -0.24
USP39-203ENST00000409470 PCP4P48539 62 aa13.55□□□□□ -0.24
USP39-203ENST00000409470 ORMDL1Q9P0S3 153 aa13.55□□□□□ -0.24
USP39-203ENST00000409470 TRAV23DV6A0A075B6W5 121 aa13.54□□□□□ -0.24
USP39-203ENST00000409470 M0R378 163 aa13.54□□□□□ -0.24
USP39-203ENST00000409470 KRTAP1-5Q9BYS1 174 aa13.53□□□□□ -0.24
USP39-203ENST00000409470 C9orf129Q5T035 196 aaKnown RBP13.52□□□□□ -0.24
USP39-203ENST00000409470 NUPR2A6NF83 97 aa13.52□□□□□ -0.25
USP39-203ENST00000409470 LINC00167Q96N53 147 aa13.52□□□□□ -0.25
USP39-203ENST00000409470 TLX1NBP0CAT3 122 aa13.51□□□□□ -0.25
USP39-203ENST00000409470 LINC00575Q6W349 94 aa13.51□□□□□ -0.25
USP39-203ENST00000409470 DIRC1Q969H9 104 aa13.51□□□□□ -0.25
USP39-203ENST00000409470 INAFM2P0DMQ5 153 aa13.5□□□□□ -0.25
USP39-203ENST00000409470 ZNF73O43830 326 aaPredicted RBP13.49□□□□□ -0.25
USP39-203ENST00000409470 XGP55808 180 aa13.49□□□□□ -0.25
USP39-203ENST00000409470 hADV29S1A0JD25 119 aa13.48□□□□□ -0.25
USP39-203ENST00000409470 PSCAO43653 123 aa13.48□□□□□ -0.25
USP39-203ENST00000409470 FAM240AA0A1B0GVK7 77 aa13.47□□□□□ -0.25
USP39-203ENST00000409470 DYNC2H1Q8NCM8 4307 aaKnown RBP13.47□□□□□ -0.25
USP39-203ENST00000409470 NKAPP1Q8N9T2 125 aa13.47□□□□□ -0.25
USP39-203ENST00000409470 MT-ATP8P03928 68 aa13.46□□□□□ -0.25
USP39-203ENST00000409470 LYSTQ99698 3801 aa13.46□□□□□ -0.25
USP39-203ENST00000409470 TMEM256-PLSCR3K7ERE1 68 aa13.44□□□□□ -0.26
USP39-203ENST00000409470 SERTAD4-AS1Q5TG53 156 aa13.44□□□□□ -0.26
USP39-203ENST00000409470 COX7BP24311 80 aa13.44□□□□□ -0.26
USP39-203ENST00000409470 GAGE2BQ13066 116 aa13.44□□□□□ -0.26
USP39-203ENST00000409470 ACYP1P07311 99 aa13.42□□□□□ -0.26
USP39-203ENST00000409470 C21orf62-AS1Q17RA5 79 aa13.42□□□□□ -0.26
USP39-203ENST00000409470 OBSCN-AS1Q96MR7 158 aa13.42□□□□□ -0.26
USP39-203ENST00000409470 C14orf132Q9NPU4 83 aa13.42□□□□□ -0.26
USP39-203ENST00000409470 LOC107984640A0A0U1RRK4 108 aa13.41□□□□□ -0.26
USP39-203ENST00000409470 A0A1B0GV72 72 aa13.41□□□□□ -0.26
USP39-203ENST00000409470 PLA2G2DQ9UNK4 145 aa13.41□□□□□ -0.26
USP39-203ENST00000409470 TRBV7-6A0A0J9YX20 115 aa13.4□□□□□ -0.26
USP39-203ENST00000409470 ELOF1P60002 83 aaKnown RBP13.4□□□□□ -0.26
USP39-203ENST00000409470 GAGE2AQ6NT46 116 aa13.4□□□□□ -0.26
USP39-203ENST00000409470 CSMD3Q7Z407 3707 aa13.4□□□□□ -0.26
USP39-203ENST00000409470 C7orf33Q8WU49 177 aa13.39□□□□□ -0.27
USP39-203ENST00000409470 PRKDCP78527 4128 aaKnown RBP13.39□□□□□ -0.27
USP39-203ENST00000409470 TTC32Q5I0X7 151 aa13.39□□□□□ -0.27
USP39-203ENST00000409470 FAM168BA1KXE4 195 aa13.38□□□□□ -0.27
USP39-203ENST00000409470 SCGB1A1P11684 91 aa13.38□□□□□ -0.27
USP39-203ENST00000409470 NBDYA0A0U1RRE5 68 aa13.37□□□□□ -0.27
USP39-203ENST00000409470 Q6ZQY7 126 aa13.37□□□□□ -0.27
USP39-203ENST00000409470 DNHD1Q96M86 4753 aa13.37□□□□□ -0.27
USP39-203ENST00000409470 PLECQ15149 4684 aaKnown RBP13.36□□□□□ -0.27
USP39-203ENST00000409470 JMJD7-PLA2G4BH0Y9G9 81 aa13.36□□□□□ -0.27
USP39-203ENST00000409470 KCNQ1DNQ9H478 68 aa13.35□□□□□ -0.27
USP39-203ENST00000409470 TENM2Q9NT68 2774 aa13.34□□□□□ -0.27
USP39-203ENST00000409470 IGLV5-37A0A075B6J1 123 aa13.34□□□□□ -0.27
USP39-203ENST00000409470 C14orf177Q52M58 125 aa13.34□□□□□ -0.27
USP39-203ENST00000409470 DNAH10Q8IVF4 4471 aa13.34□□□□□ -0.27
USP39-203ENST00000409470 CNBPP62633 177 aaKnown RBP13.34□□□□□ -0.27
USP39-203ENST00000409470 MEGF8Q7Z7M0 2845 aa13.33□□□□□ -0.28
USP39-203ENST00000409470 FAM19A5Q7Z5A7 132 aaPredicted RBP13.33□□□□□ -0.28
USP39-203ENST00000409470 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.32□□□□□ -0.28
USP39-203ENST00000409470 LINC00528Q8N1L1 170 aa13.32□□□□□ -0.28
USP39-203ENST00000409470 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.32□□□□□ -0.28
USP39-203ENST00000409470 RPL37AP8A6NKH3 93 aa13.32□□□□□ -0.28
USP39-203ENST00000409470 H3BQ85 93 aa13.32□□□□□ -0.28
USP39-203ENST00000409470 DNAH7Q8WXX0 4024 aa13.32□□□□□ -0.28
USP39-203ENST00000409470 LAMTOR3Q9UHA4 124 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms