RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KRTAP10-9P60411 292 aa7.19□□□□□ -1.26
LIMCH1-203ENST00000396595 C11orf72Q8NBR9 251 aa7.19□□□□□ -1.26
LIMCH1-203ENST00000396595 IGHV3OR16-9A0A0B4J2B5 98 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 NUPR2A6NF83 97 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 PRO0461Q9UI25 63 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 ZFYVE26Q68DK2 2539 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 A8MTW9 85 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 LY6G6CO95867 125 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 Q6ZRU5 148 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 CIRBP-AS1Q8TBR5 109 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 TP53AIP1Q9HCN2 124 aa7.18□□□□□ -1.26
LIMCH1-203ENST00000396595 IGLV5-45A0A087WSX0 123 aa7.16□□□□□ -1.26
LIMCH1-203ENST00000396595 WIPF1O43516 503 aa7.16□□□□□ -1.26
LIMCH1-203ENST00000396595 Q8N2B8 174 aa7.16□□□□□ -1.26
LIMCH1-203ENST00000396595 IGLV8-61A0A075B6I0 122 aa7.15□□□□□ -1.26
LIMCH1-203ENST00000396595 SETD2Q9BYW2 2564 aaPredicted RBP7.15□□□□□ -1.27
LIMCH1-203ENST00000396595 TET2Q6N021 2002 aaPredicted RBP7.15□□□□□ -1.27
LIMCH1-203ENST00000396595 SPATA3Q8NHX4 192 aa7.14□□□□□ -1.27
LIMCH1-203ENST00000396595 USP9YO00507 2555 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-203ENST00000396595 TM2D3Q9BRN9 247 aa7.14□□□□□ -1.27
LIMCH1-203ENST00000396595 PKD1L2Q7Z442 2459 aa7.14□□□□□ -1.27
LIMCH1-203ENST00000396595 LINC01556Q5JQF7 62 aa7.14□□□□□ -1.27
LIMCH1-203ENST00000396595 SMR3AQ99954 134 aa7.14□□□□□ -1.27
LIMCH1-203ENST00000396595 CRIPTQ9P021 101 aa7.14□□□□□ -1.27
LIMCH1-203ENST00000396595 LOC101927531A0A1B0GV80 90 aa7.13□□□□□ -1.27
LIMCH1-203ENST00000396595 IGKV2D-30A0A075B6S6 120 aa7.13□□□□□ -1.27
LIMCH1-203ENST00000396595 IGKV2-30P06310 120 aa7.13□□□□□ -1.27
LIMCH1-203ENST00000396595 A0A1B0GW54 56 aa7.12□□□□□ -1.27
LIMCH1-203ENST00000396595 UQCR11O14957 56 aa7.12□□□□□ -1.27
LIMCH1-203ENST00000396595 PRR15Q8IV56 129 aa7.12□□□□□ -1.27
LIMCH1-203ENST00000396595 C22orf24Q9Y442 160 aa7.12□□□□□ -1.27
LIMCH1-203ENST00000396595 IGLV5-52A0A0A0MRZ9 124 aa7.12□□□□□ -1.27
LIMCH1-203ENST00000396595 ERC2-IT1O76042 136 aa7.12□□□□□ -1.27
LIMCH1-203ENST00000396595 KIAA0087Q14695 138 aa7.12□□□□□ -1.27
LIMCH1-203ENST00000396595 SMCR5Q8TEV8 140 aa7.12□□□□□ -1.27
LIMCH1-203ENST00000396595 SRCAPQ6ZRS2 3230 aa7.11□□□□□ -1.27
LIMCH1-203ENST00000396595 MUC4Q99102 2169 aa7.11□□□□□ -1.27
LIMCH1-203ENST00000396595 COA5Q86WW8 74 aa7.11□□□□□ -1.27
LIMCH1-203ENST00000396595 FAM218AQ96MZ4 157 aa7.1□□□□□ -1.27
LIMCH1-203ENST00000396595 LINC01600Q96MT4 127 aa7.1□□□□□ -1.27
LIMCH1-203ENST00000396595 LRRK2Q5S007 2527 aa7.1□□□□□ -1.27
LIMCH1-203ENST00000396595 WDR87Q6ZQQ6 2873 aa7.1□□□□□ -1.27
LIMCH1-203ENST00000396595 MIR22HGQ0VDD5 57 aa7.09□□□□□ -1.27
LIMCH1-203ENST00000396595 LINC01554Q52M75 96 aa7.09□□□□□ -1.27
LIMCH1-203ENST00000396595 TRAV22A0A0B4J277 110 aa7.09□□□□□ -1.27
LIMCH1-203ENST00000396595 ZNF462Q96JM2 2506 aa7.07□□□□□ -1.28
LIMCH1-203ENST00000396595 LOC110117498A0A087WWA1 95 aa7.07□□□□□ -1.28
LIMCH1-203ENST00000396595 Q6ZQT0 140 aa7.07□□□□□ -1.28
LIMCH1-203ENST00000396595 ELOF1P60002 83 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-203ENST00000396595 LINC00167Q96N53 147 aa7.06□□□□□ -1.28
LIMCH1-203ENST00000396595 RBM12B-AS1Q9P1G2 102 aa7.06□□□□□ -1.28
LIMCH1-203ENST00000396595 NHLRC4P0CG21 123 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-203ENST00000396595 Q8NBF4 154 aa7.04□□□□□ -1.28
LIMCH1-203ENST00000396595 C1orf134Q5TEV5 83 aa7.04□□□□□ -1.28
LIMCH1-203ENST00000396595 ANKRD11Q6UB99 2663 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-203ENST00000396595 CEP295Q9C0D2 2601 aa7.04□□□□□ -1.28
LIMCH1-203ENST00000396595 H3BNG1 76 aa7.03□□□□□ -1.28
LIMCH1-203ENST00000396595 FHL3Q13643 280 aa7.03□□□□□ -1.28
LIMCH1-203ENST00000396595 PTPRBP23467 1997 aa7.02□□□□□ -1.29
LIMCH1-203ENST00000396595 KLKP1Q107X0 134 aa7.01□□□□□ -1.29
LIMCH1-203ENST00000396595 LUZP6Q538Z0 58 aa7.01□□□□□ -1.29
LIMCH1-203ENST00000396595 CDC42SE1Q9NRR8 79 aa7.01□□□□□ -1.29
LIMCH1-203ENST00000396595 LITAFQ99732 161 aa7.01□□□□□ -1.29
LIMCH1-203ENST00000396595 KLK9Q2XQG4 91 aa7.01□□□□□ -1.29
LIMCH1-203ENST00000396595 Q6ZRX8 168 aa7□□□□□ -1.29
LIMCH1-203ENST00000396595 LINC00476Q8WZB0 136 aa6.99□□□□□ -1.29
LIMCH1-203ENST00000396595 MTORP42345 2549 aa6.99□□□□□ -1.29
LIMCH1-203ENST00000396595 MOBPQ13875 183 aa6.98□□□□□ -1.29
LIMCH1-203ENST00000396595 GVQW2A0A096LPI5 108 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-203ENST00000396595 APLNQ9ULZ1 77 aa6.97□□□□□ -1.29
LIMCH1-203ENST00000396595 H7BZZ5 65 aa6.97□□□□□ -1.29
LIMCH1-203ENST00000396595 IGLV6-57P01721 117 aa6.94□□□□□ -1.3
LIMCH1-203ENST00000396595 TRBV7-4A0A0J9YYF1 115 aa6.93□□□□□ -1.3
LIMCH1-203ENST00000396595 A0A0A0MQY5 61 aa6.93□□□□□ -1.3
LIMCH1-203ENST00000396595 EPM2AB3EWF7 344 aa6.92□□□□□ -1.3
LIMCH1-203ENST00000396595 COL27A1Q8IZC6 1860 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-203ENST00000396595 ST20-AS1Q8NBB2 130 aa6.92□□□□□ -1.3
LIMCH1-203ENST00000396595 SPACA4Q8TDM5 124 aa6.92□□□□□ -1.3
LIMCH1-203ENST00000396595 C16orf90A8MZG2 172 aa6.92□□□□□ -1.3
LIMCH1-203ENST00000396595 PHF5AQ7RTV0 110 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-203ENST00000396595 Q8NAQ8 132 aa6.91□□□□□ -1.3
LIMCH1-203ENST00000396595 RPL37AP61513 92 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-203ENST00000396595 F8P00451 2351 aa6.91□□□□□ -1.3
LIMCH1-203ENST00000396595 SPTBN4Q9H254 2564 aa6.91□□□□□ -1.3
LIMCH1-203ENST00000396595 C9orf129Q5T035 196 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-203ENST00000396595 PCNTO95613 3336 aa6.9□□□□□ -1.3
LIMCH1-203ENST00000396595 Q6ZRP5 223 aa6.88□□□□□ -1.31
LIMCH1-203ENST00000396595 LINC00313P59037 77 aa6.88□□□□□ -1.31
LIMCH1-203ENST00000396595 A8MWP4 228 aa6.88□□□□□ -1.31
LIMCH1-203ENST00000396595 Q1T7F1 81 aa6.88□□□□□ -1.31
LIMCH1-203ENST00000396595 CHD8Q9HCK8 2581 aa6.88□□□□□ -1.31
LIMCH1-203ENST00000396595 K7EQZ3 153 aa6.88□□□□□ -1.31
LIMCH1-203ENST00000396595 COL4A2P08572 1712 aa6.88□□□□□ -1.31
LIMCH1-203ENST00000396595 LINC00588Q9Y4M8 146 aa6.86□□□□□ -1.31
LIMCH1-203ENST00000396595 LINC00528Q8N1L1 170 aa6.86□□□□□ -1.31
LIMCH1-203ENST00000396595 DNAH10OSP0CZ25 163 aa6.85□□□□□ -1.31
LIMCH1-203ENST00000396595 KCNQ1DNQ9H478 68 aa6.85□□□□□ -1.31
LIMCH1-203ENST00000396595 EIF4EBP3O60516 100 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-203ENST00000396595 FAM229AH3BQW9 127 aa6.85□□□□□ -1.31
LIMCH1-203ENST00000396595 NBDYA0A0U1RRE5 68 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms