RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 IGKV1-13P0DP09 117 aa5.78□□□□□ -1.48
LIMS1-203ENST00000393310 DIRC1Q969H9 104 aa5.78□□□□□ -1.48
LIMS1-203ENST00000393310 CHCHD7Q9BUK0 85 aa5.78□□□□□ -1.48
LIMS1-203ENST00000393310 MAP1AP78559 2803 aaPredicted RBP5.78□□□□□ -1.48
LIMS1-203ENST00000393310 A0A0J9YXV3 536 aa5.78□□□□□ -1.48
LIMS1-203ENST00000393310 A0A0J9YX75 114 aa5.77□□□□□ -1.49
LIMS1-203ENST00000393310 KIAA0087Q14695 138 aa5.77□□□□□ -1.49
LIMS1-203ENST00000393310 ITPR1Q14643 2758 aa5.77□□□□□ -1.49
LIMS1-203ENST00000393310 IGHV3-30P01768 117 aa5.77□□□□□ -1.49
LIMS1-203ENST00000393310 ANGP03950 147 aaKnown RBP5.77□□□□□ -1.49
LIMS1-203ENST00000393310 IGHV3-30-3P0DP02 117 aa5.77□□□□□ -1.49
LIMS1-203ENST00000393310 IGHV3-30-5P0DP03 117 aa5.77□□□□□ -1.49
LIMS1-203ENST00000393310 NSD1Q96L73 2696 aaPredicted RBP5.76□□□□□ -1.49
LIMS1-203ENST00000393310 IGKV1-5P01602 117 aa5.76□□□□□ -1.49
LIMS1-203ENST00000393310 UNQ9165/PRO28630Q6UXU0 137 aa5.76□□□□□ -1.49
LIMS1-203ENST00000393310 OXTP01178 125 aa5.76□□□□□ -1.49
LIMS1-203ENST00000393310 SDHAF1A6NFY7 115 aa5.75□□□□□ -1.49
LIMS1-203ENST00000393310 APLNQ9ULZ1 77 aa5.75□□□□□ -1.49
LIMS1-203ENST00000393310 IGHV6-1A0A0B4J1U7 121 aa5.75□□□□□ -1.49
LIMS1-203ENST00000393310 K7EIM0 57 aa5.75□□□□□ -1.49
LIMS1-203ENST00000393310 IGKV3OR2-268A0A0C4DH90 116 aa5.75□□□□□ -1.49
LIMS1-203ENST00000393310 I3L3M4 83 aa5.75□□□□□ -1.49
LIMS1-203ENST00000393310 LINC00467Q9BRT7 94 aa5.74□□□□□ -1.49
LIMS1-203ENST00000393310 TMEM14CQ9P0S9 112 aa5.74□□□□□ -1.49
LIMS1-203ENST00000393310 A0A096LPF7 62 aa5.74□□□□□ -1.49
LIMS1-203ENST00000393310 CDK2AP2O75956 126 aa5.74□□□□□ -1.49
LIMS1-203ENST00000393310 WT1-ASQ06250 92 aa5.74□□□□□ -1.49
LIMS1-203ENST00000393310 GDF5OSQ5U4N7 250 aa5.74□□□□□ -1.49
LIMS1-203ENST00000393310 RPL37AP61513 92 aaKnown RBP5.73□□□□□ -1.49
LIMS1-203ENST00000393310 KLKP1Q107X0 134 aa5.73□□□□□ -1.49
LIMS1-203ENST00000393310 PRR4Q16378 134 aa5.73□□□□□ -1.49
LIMS1-203ENST00000393310 SMIM2Q9BVW6 85 aa5.73□□□□□ -1.49
LIMS1-203ENST00000393310 H3BQ85 93 aa5.73□□□□□ -1.49
LIMS1-203ENST00000393310 LINC00158P58513 81 aa5.73□□□□□ -1.49
LIMS1-203ENST00000393310 FBN3Q75N90 2809 aa5.73□□□□□ -1.49
LIMS1-203ENST00000393310 GNRH2O43555 120 aa5.73□□□□□ -1.49
LIMS1-203ENST00000393310 Q86TA4 180 aa5.73□□□□□ -1.49
LIMS1-203ENST00000393310 H7BZZ5 65 aa5.72□□□□□ -1.49
LIMS1-203ENST00000393310 I3L2K1 104 aa5.72□□□□□ -1.49
LIMS1-203ENST00000393310 LELP1Q5T871 98 aa5.72□□□□□ -1.49
LIMS1-203ENST00000393310 IGHV3OR16-9A0A0B4J2B5 98 aa5.72□□□□□ -1.49
LIMS1-203ENST00000393310 LINC00313P59037 77 aa5.72□□□□□ -1.49
LIMS1-203ENST00000393310 MRPL36Q9P0J6 103 aaKnown RBP5.72□□□□□ -1.49
LIMS1-203ENST00000393310 UBE2D4Q9Y2X8 147 aa5.72□□□□□ -1.49
LIMS1-203ENST00000393310 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.72□□□□□ -1.49
LIMS1-203ENST00000393310 LINC00588Q9Y4M8 146 aa5.72□□□□□ -1.49
LIMS1-203ENST00000393310 C19orf71A6NCJ1 209 aa5.71□□□□□ -1.49
LIMS1-203ENST00000393310 BPY2O14599 106 aa5.71□□□□□ -1.5
LIMS1-203ENST00000393310 KLK9Q9UKQ9 250 aa5.71□□□□□ -1.5
LIMS1-203ENST00000393310 TRBV6-8A0A0A6YYG3 113 aa5.71□□□□□ -1.5
LIMS1-203ENST00000393310 FP248Q71RG6 208 aaPredicted RBP5.71□□□□□ -1.5
LIMS1-203ENST00000393310 RITA1Q96K30 269 aa5.71□□□□□ -1.5
LIMS1-203ENST00000393310 PMS2P5A8MQ11 134 aa5.7□□□□□ -1.5
LIMS1-203ENST00000393310 LECT2O14960 151 aa5.7□□□□□ -1.5
LIMS1-203ENST00000393310 MIAQ16674 131 aa5.7□□□□□ -1.5
LIMS1-203ENST00000393310 TOMM7Q9P0U1 55 aa5.7□□□□□ -1.5
LIMS1-203ENST00000393310 TRAV22A0A0B4J277 110 aa5.69□□□□□ -1.5
LIMS1-203ENST00000393310 C11orf86A6NJI1 115 aa5.69□□□□□ -1.5
LIMS1-203ENST00000393310 KRTAP16-1A8MUX0 517 aa5.69□□□□□ -1.5
LIMS1-203ENST00000393310 TACC2O95359 2948 aa5.69□□□□□ -1.5
LIMS1-203ENST00000393310 RNASE3P12724 160 aaKnown RBP5.69□□□□□ -1.5
LIMS1-203ENST00000393310 TRBV10-1A0A0K0K1A3 114 aa5.68□□□□□ -1.5
LIMS1-203ENST00000393310 EIF4EBP1Q13541 118 aaPredicted RBP5.68□□□□□ -1.5
LIMS1-203ENST00000393310 DSCAML1Q8TD84 2053 aa5.68□□□□□ -1.5
LIMS1-203ENST00000393310 IGLV5-45A0A087WSX0 123 aa5.68□□□□□ -1.5
LIMS1-203ENST00000393310 H3BRN7 92 aa5.68□□□□□ -1.5
LIMS1-203ENST00000393310 KLK12Q9UKR0 248 aa5.68□□□□□ -1.5
LIMS1-203ENST00000393310 IGKV3D-20A0A0C4DH25 116 aa5.68□□□□□ -1.5
LIMS1-203ENST00000393310 PHF5AQ7RTV0 110 aaKnown RBP5.68□□□□□ -1.5
LIMS1-203ENST00000393310 A0A1B0GW54 56 aa5.67□□□□□ -1.5
LIMS1-203ENST00000393310 Q8N3U1 123 aa5.67□□□□□ -1.5
LIMS1-203ENST00000393310 K7EQD1 137 aa5.67□□□□□ -1.5
LIMS1-203ENST00000393310 LINC00208Q96KT6 92 aa5.67□□□□□ -1.5
LIMS1-203ENST00000393310 A0A0G2JRQ6 117 aa5.67□□□□□ -1.5
LIMS1-203ENST00000393310 LINC00315P59091 139 aa5.67□□□□□ -1.5
LIMS1-203ENST00000393310 RNF185Q96GF1 192 aa5.67□□□□□ -1.5
LIMS1-203ENST00000393310 Q1T7F1 81 aa5.66□□□□□ -1.5
LIMS1-203ENST00000393310 LINC00337Q8N6G1 96 aa5.66□□□□□ -1.5
LIMS1-203ENST00000393310 Q8NAQ8 132 aa5.66□□□□□ -1.5
LIMS1-203ENST00000393310 SYCNQ0VAF6 134 aa5.66□□□□□ -1.5
LIMS1-203ENST00000393310 XAGE1AQ9HD64 81 aa5.66□□□□□ -1.5
LIMS1-203ENST00000393310 LINC00846Q9NV44 126 aa5.66□□□□□ -1.5
LIMS1-203ENST00000393310 AGRNO00468 2067 aa5.66□□□□□ -1.5
LIMS1-203ENST00000393310 Q8N1X5 172 aa5.66□□□□□ -1.5
LIMS1-203ENST00000393310 IGKV1-6A0A0C4DH72 117 aa5.65□□□□□ -1.5
LIMS1-203ENST00000393310 RTL8CO15255 209 aa5.65□□□□□ -1.5
LIMS1-203ENST00000393310 IGLV2-8P01709 118 aa5.65□□□□□ -1.5
LIMS1-203ENST00000393310 RPL28P46779 137 aaKnown RBP5.65□□□□□ -1.5
LIMS1-203ENST00000393310 TANC2Q9HCD6 1990 aa5.65□□□□□ -1.5
LIMS1-203ENST00000393310 CDC42SE1Q9NRR8 79 aa5.65□□□□□ -1.5
LIMS1-203ENST00000393310 TRBV6-4A0A1B0GX49 114 aa5.65□□□□□ -1.51
LIMS1-203ENST00000393310 NCR3O14931 201 aa5.64□□□□□ -1.51
LIMS1-203ENST00000393310 C9orf47Q6ZRZ4 202 aa5.64□□□□□ -1.51
LIMS1-203ENST00000393310 URB1-AS1Q96HZ7 61 aa5.64□□□□□ -1.51
LIMS1-203ENST00000393310 IGHV3-73A0A0B4J1V6 119 aa5.64□□□□□ -1.51
LIMS1-203ENST00000393310 IGKV1-17P01599 117 aa5.64□□□□□ -1.51
LIMS1-203ENST00000393310 TSPEAR-AS2P59090 65 aa5.64□□□□□ -1.51
LIMS1-203ENST00000393310 C11orf72Q8NBR9 251 aa5.64□□□□□ -1.51
LIMS1-203ENST00000393310 STAB2Q8WWQ8 2551 aa5.63□□□□□ -1.51
LIMS1-203ENST00000393310 Q5VSD8 79 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms