RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TRRAPQ9Y4A5 3859 aa12.56□□□□□ -0.4
CCDC3-201ENST00000378825 C4orf26Q17RF5 130 aa12.56□□□□□ -0.4
CCDC3-201ENST00000378825 S100A7L2Q5SY68 101 aa12.56□□□□□ -0.4
CCDC3-201ENST00000378825 CD164L2Q6UWJ8 174 aa12.55□□□□□ -0.4
CCDC3-201ENST00000378825 LINC00575Q6W349 94 aa12.55□□□□□ -0.4
CCDC3-201ENST00000378825 CMC4P56277 68 aaPredicted RBP12.54□□□□□ -0.4
CCDC3-201ENST00000378825 LYPD5Q6UWN5 251 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 X6R8D5 127 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 ATRQ13535 2644 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 NDUFC2O95298 119 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 UBL5Q9BZL1 73 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 PRO0255Q9UI72 69 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 REG3AQ06141 175 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 Q6ZQT0 140 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 LINC00482Q8N8I6 264 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 LAMTOR3Q9UHA4 124 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 LINC00612Q8N6U2 182 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 C5orf47Q569G3 176 aa12.52□□□□□ -0.41
CCDC3-201ENST00000378825 NSD1Q96L73 2696 aaPredicted RBP12.51□□□□□ -0.41
CCDC3-201ENST00000378825 RBM3P98179 157 aaKnown RBP12.51□□□□□ -0.41
CCDC3-201ENST00000378825 HAMPP81172 84 aa12.51□□□□□ -0.41
CCDC3-201ENST00000378825 Q6ZQY7 126 aa12.5□□□□□ -0.41
CCDC3-201ENST00000378825 TRAV10A0A0B4J240 114 aa12.5□□□□□ -0.41
CCDC3-201ENST00000378825 COX17Q14061 63 aa12.49□□□□□ -0.41
CCDC3-201ENST00000378825 ATP5EP2Q5VTU8 51 aa12.49□□□□□ -0.41
CCDC3-201ENST00000378825 Q5XG85 94 aa12.49□□□□□ -0.41
CCDC3-201ENST00000378825 IGHV4-28A0A0C4DH34 117 aa12.48□□□□□ -0.41
CCDC3-201ENST00000378825 SCXQ7RTU7 201 aa12.48□□□□□ -0.41
CCDC3-201ENST00000378825 LINC01547P58512 204 aaPredicted RBP12.48□□□□□ -0.41
CCDC3-201ENST00000378825 HRCT1Q6UXD1 115 aa12.48□□□□□ -0.41
CCDC3-201ENST00000378825 XAGE1AQ9HD64 81 aa12.47□□□□□ -0.41
CCDC3-201ENST00000378825 CYSRT1A8MQ03 144 aa12.46□□□□□ -0.41
CCDC3-201ENST00000378825 Q6ZVQ6 151 aa12.46□□□□□ -0.41
CCDC3-201ENST00000378825 SPAG11BQ08648 103 aa12.46□□□□□ -0.41
CCDC3-201ENST00000378825 DEFB135Q30KP9 77 aa12.46□□□□□ -0.41
CCDC3-201ENST00000378825 ZNF561-AS1K7EIQ3 104 aa12.46□□□□□ -0.42
CCDC3-201ENST00000378825 SNURFQ9Y675 71 aa12.46□□□□□ -0.42
CCDC3-201ENST00000378825 HIVEP1P15822 2718 aa12.45□□□□□ -0.42
CCDC3-201ENST00000378825 INAFM1C9JVW0 142 aa12.45□□□□□ -0.42
CCDC3-201ENST00000378825 PKD1L1Q8TDX9 2849 aa12.44□□□□□ -0.42
CCDC3-201ENST00000378825 TRBV10-3A0A0K0K1G6 114 aa12.44□□□□□ -0.42
CCDC3-201ENST00000378825 HTN3P15516 51 aa12.43□□□□□ -0.42
CCDC3-201ENST00000378825 CELA1Q9UNI1 258 aa12.43□□□□□ -0.42
CCDC3-201ENST00000378825 IGLV6-57P01721 117 aa12.42□□□□□ -0.42
CCDC3-201ENST00000378825 LOC110117498A0A087WWA1 95 aa12.41□□□□□ -0.42
CCDC3-201ENST00000378825 H7BZZ5 65 aa12.41□□□□□ -0.42
CCDC3-201ENST00000378825 KLK12Q9UKR0 248 aa12.41□□□□□ -0.42
CCDC3-201ENST00000378825 TEP1Q99973 2627 aaKnown RBP12.41□□□□□ -0.42
CCDC3-201ENST00000378825 RMI2Q96E14 147 aa12.41□□□□□ -0.42
CCDC3-201ENST00000378825 FAM236DA0A1B0GTK5 79 aa12.38□□□□□ -0.43
CCDC3-201ENST00000378825 FAM236CP0DP71 79 aa12.38□□□□□ -0.43
CCDC3-201ENST00000378825 MUC7Q8TAX7 377 aa12.38□□□□□ -0.43
CCDC3-201ENST00000378825 C6orf48Q9UBA6 75 aa12.37□□□□□ -0.43
CCDC3-201ENST00000378825 TRAV7A0A075B6U4 112 aa12.36□□□□□ -0.43
CCDC3-201ENST00000378825 DAD1P61803 113 aa12.36□□□□□ -0.43
CCDC3-201ENST00000378825 TM2D3Q9BRN9 247 aa12.36□□□□□ -0.43
CCDC3-201ENST00000378825 A0A0J9YWU9 116 aa12.35□□□□□ -0.43
CCDC3-201ENST00000378825 IGHV4-30-4P0DP06 118 aa12.35□□□□□ -0.43
CCDC3-201ENST00000378825 Q8N9L7 120 aa12.34□□□□□ -0.43
CCDC3-201ENST00000378825 HIGD2BQ4VC39 106 aa12.33□□□□□ -0.44
CCDC3-201ENST00000378825 NDUFC2-KCTD14E9PQ53 114 aa12.33□□□□□ -0.44
CCDC3-201ENST00000378825 LYRM9A8MSI8 78 aa12.32□□□□□ -0.44
CCDC3-201ENST00000378825 DIRC1Q969H9 104 aa12.32□□□□□ -0.44
CCDC3-201ENST00000378825 F8WEM9 126 aa12.31□□□□□ -0.44
CCDC3-201ENST00000378825 ZNF73O43830 326 aaPredicted RBP12.31□□□□□ -0.44
CCDC3-201ENST00000378825 C9orf66Q5T8R8 295 aa12.31□□□□□ -0.44
CCDC3-201ENST00000378825 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.31□□□□□ -0.44
CCDC3-201ENST00000378825 TRBV7-4A0A0J9YYF1 115 aa12.3□□□□□ -0.44
CCDC3-201ENST00000378825 KLKP1Q107X0 134 aa12.28□□□□□ -0.44
CCDC3-201ENST00000378825 COX7BP24311 80 aa12.28□□□□□ -0.44
CCDC3-201ENST00000378825 PRR34Q9NV39 138 aa12.28□□□□□ -0.44
CCDC3-201ENST00000378825 CXCL6P80162 114 aa12.27□□□□□ -0.45
CCDC3-201ENST00000378825 LELP1Q5T871 98 aa12.26□□□□□ -0.45
CCDC3-201ENST00000378825 Q8NAQ8 132 aa12.26□□□□□ -0.45
CCDC3-201ENST00000378825 ELOF1P60002 83 aaKnown RBP12.25□□□□□ -0.45
CCDC3-201ENST00000378825 EPM2AB3EWF7 344 aa12.24□□□□□ -0.45
CCDC3-201ENST00000378825 FLNBO75369 2602 aaKnown RBP12.24□□□□□ -0.45
CCDC3-201ENST00000378825 VPREB1P12018 145 aa12.24□□□□□ -0.45
CCDC3-201ENST00000378825 SERP1Q9Y6X1 66 aa12.24□□□□□ -0.45
CCDC3-201ENST00000378825 PDE6GP18545 87 aa12.22□□□□□ -0.45
CCDC3-201ENST00000378825 APOC4P55056 127 aa12.22□□□□□ -0.45
CCDC3-201ENST00000378825 FP248Q71RG6 208 aaPredicted RBP12.22□□□□□ -0.45
CCDC3-201ENST00000378825 WFDC10BQ8IUB3 73 aa12.22□□□□□ -0.45
CCDC3-201ENST00000378825 LINC00474Q9P2X8 69 aa12.22□□□□□ -0.45
CCDC3-201ENST00000378825 GVQW2A0A096LPI5 108 aaPredicted RBP12.21□□□□□ -0.45
CCDC3-201ENST00000378825 BPY2O14599 106 aa12.21□□□□□ -0.45
CCDC3-201ENST00000378825 Q6ZRU5 148 aa12.21□□□□□ -0.45
CCDC3-201ENST00000378825 CAMK2N2Q96S95 79 aa12.21□□□□□ -0.46
CCDC3-201ENST00000378825 BCE1O60756 84 aa12.2□□□□□ -0.46
CCDC3-201ENST00000378825 NREPQ16612 68 aa12.2□□□□□ -0.46
CCDC3-201ENST00000378825 C3orf84H3BNL1 204 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 WIPF1O43516 503 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 LINC00336Q6ZUF6 198 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 F8P00451 2351 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 ANK2Q01484 3957 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 STAB1Q9NY15 2570 aa12.17□□□□□ -0.46
CCDC3-201ENST00000378825 LINC00528Q8N1L1 170 aa12.17□□□□□ -0.46
CCDC3-201ENST00000378825 TENM3Q9P273 2699 aa12.17□□□□□ -0.46
CCDC3-201ENST00000378825 SPART-AS1P0CW21 52 aa12.17□□□□□ -0.46
CCDC3-201ENST00000378825 DEFB105AQ8NG35 78 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms