RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 USP24Q9UPU5 2620 aa10.54□□□□□ -0.72
NPHP4-201ENST00000378156 PRO0628Q9UI54 55 aa10.54□□□□□ -0.72
NPHP4-201ENST00000378156 C10orf25Q5T742 122 aa10.53□□□□□ -0.72
NPHP4-201ENST00000378156 Q6ZVQ6 151 aa10.53□□□□□ -0.72
NPHP4-201ENST00000378156 VPS13AQ96RL7 3174 aa10.53□□□□□ -0.72
NPHP4-201ENST00000378156 C6orf223Q8N319 242 aa10.53□□□□□ -0.72
NPHP4-201ENST00000378156 FSHBP01225 129 aa10.52□□□□□ -0.73
NPHP4-201ENST00000378156 CRYGAP11844 174 aa10.52□□□□□ -0.73
NPHP4-201ENST00000378156 BCE1O60756 84 aa10.52□□□□□ -0.73
NPHP4-201ENST00000378156 LINC01561Q8N1V8 128 aa10.52□□□□□ -0.73
NPHP4-201ENST00000378156 PRO0461Q9UI25 63 aa10.52□□□□□ -0.73
NPHP4-201ENST00000378156 TRBV7-6A0A0J9YX20 115 aa10.51□□□□□ -0.73
NPHP4-201ENST00000378156 RPS28P62857 69 aaKnown RBP10.51□□□□□ -0.73
NPHP4-201ENST00000378156 CXCL6P80162 114 aa10.51□□□□□ -0.73
NPHP4-201ENST00000378156 IGLV5-39A0A0G2JS06 123 aa10.51□□□□□ -0.73
NPHP4-201ENST00000378156 LINC00575Q6W349 94 aa10.51□□□□□ -0.73
NPHP4-201ENST00000378156 ESRGQ1W209 222 aa10.51□□□□□ -0.73
NPHP4-201ENST00000378156 PLAC8L1A1L4L8 177 aa10.5□□□□□ -0.73
NPHP4-201ENST00000378156 F8WDY8 70 aa10.5□□□□□ -0.73
NPHP4-201ENST00000378156 LINC01547P58512 204 aaPredicted RBP10.5□□□□□ -0.73
NPHP4-201ENST00000378156 LINC00337Q8N6G1 96 aa10.5□□□□□ -0.73
NPHP4-201ENST00000378156 MGAM2Q2M2H8 2515 aa10.49□□□□□ -0.73
NPHP4-201ENST00000378156 PSPHP1O15172 72 aa10.49□□□□□ -0.73
NPHP4-201ENST00000378156 hDV103S1A0JD37 113 aa10.48□□□□□ -0.73
NPHP4-201ENST00000378156 SZT2Q5T011 3432 aa10.48□□□□□ -0.73
NPHP4-201ENST00000378156 C2orf48Q96LS8 159 aa10.47□□□□□ -0.73
NPHP4-201ENST00000378156 IGLV9-49A0A0B4J1Y8 123 aa10.46□□□□□ -0.73
NPHP4-201ENST00000378156 CENPEQ02224 2701 aa10.46□□□□□ -0.74
NPHP4-201ENST00000378156 DNAH14Q0VDD8 3507 aa10.45□□□□□ -0.74
NPHP4-201ENST00000378156 IGHV3OR16-9A0A0B4J2B5 98 aa10.45□□□□□ -0.74
NPHP4-201ENST00000378156 REG3GQ6UW15 175 aa10.45□□□□□ -0.74
NPHP4-201ENST00000378156 LAMA1P25391 3075 aa10.45□□□□□ -0.74
NPHP4-201ENST00000378156 H0Y9P7 68 aa10.44□□□□□ -0.74
NPHP4-201ENST00000378156 LIMD2Q9BT23 127 aa10.43□□□□□ -0.74
NPHP4-201ENST00000378156 KRTAP24-1Q3LI83 254 aa10.43□□□□□ -0.74
NPHP4-201ENST00000378156 VCANP13611 3396 aa10.43□□□□□ -0.74
NPHP4-201ENST00000378156 IGLV5-45A0A087WSX0 123 aa10.43□□□□□ -0.74
NPHP4-201ENST00000378156 X6R8D5 127 aa10.43□□□□□ -0.74
NPHP4-201ENST00000378156 HCG22E2RYF7 251 aa10.42□□□□□ -0.74
NPHP4-201ENST00000378156 A8MTW9 85 aa10.42□□□□□ -0.74
NPHP4-201ENST00000378156 NHLRC4P0CG21 123 aaPredicted RBP10.42□□□□□ -0.74
NPHP4-201ENST00000378156 Q6ZRU5 148 aa10.42□□□□□ -0.74
NPHP4-201ENST00000378156 SBSPONQ8IVN8 264 aa10.4□□□□□ -0.74
NPHP4-201ENST00000378156 A0A087WSZ3 146 aa10.4□□□□□ -0.75
NPHP4-201ENST00000378156 CELSR3Q9NYQ7 3312 aa10.38□□□□□ -0.75
NPHP4-201ENST00000378156 PCOTHQ58A44 107 aa10.38□□□□□ -0.75
NPHP4-201ENST00000378156 IGLV5-52A0A0A0MRZ9 124 aa10.38□□□□□ -0.75
NPHP4-201ENST00000378156 LINC01556Q5JQF7 62 aa10.38□□□□□ -0.75
NPHP4-201ENST00000378156 ZNF292O60281 2723 aa10.38□□□□□ -0.75
NPHP4-201ENST00000378156 MAST4O15021 2626 aa10.37□□□□□ -0.75
NPHP4-201ENST00000378156 Q9BRP9 147 aa10.37□□□□□ -0.75
NPHP4-201ENST00000378156 HELZ2Q9BYK8 2649 aaKnown RBP10.37□□□□□ -0.75
NPHP4-201ENST00000378156 IGHV6-1A0A0B4J1U7 121 aa10.36□□□□□ -0.75
NPHP4-201ENST00000378156 FAM218AQ96MZ4 157 aa10.36□□□□□ -0.75
NPHP4-201ENST00000378156 ATRQ13535 2644 aa10.36□□□□□ -0.75
NPHP4-201ENST00000378156 A0A1B0GW54 56 aa10.36□□□□□ -0.75
NPHP4-201ENST00000378156 FLNAP21333 2647 aaKnown RBP10.36□□□□□ -0.75
NPHP4-201ENST00000378156 C1orf134Q5TEV5 83 aa10.35□□□□□ -0.75
NPHP4-201ENST00000378156 LITAFQ99732 161 aa10.35□□□□□ -0.75
NPHP4-201ENST00000378156 A0A096LNT2 108 aa10.34□□□□□ -0.75
NPHP4-201ENST00000378156 H3BNG1 76 aa10.34□□□□□ -0.75
NPHP4-201ENST00000378156 SPATA3Q8NHX4 192 aa10.33□□□□□ -0.76
NPHP4-201ENST00000378156 C1orf64Q8NEQ6 169 aa10.32□□□□□ -0.76
NPHP4-201ENST00000378156 ITPR3Q14573 2671 aa10.32□□□□□ -0.76
NPHP4-201ENST00000378156 CFAP46Q8IYW2 2715 aa10.31□□□□□ -0.76
NPHP4-201ENST00000378156 Q8NAQ8 132 aa10.31□□□□□ -0.76
NPHP4-201ENST00000378156 DSPP15924 2871 aaKnown RBP10.31□□□□□ -0.76
NPHP4-201ENST00000378156 C4orf26Q17RF5 130 aa10.29□□□□□ -0.76
NPHP4-201ENST00000378156 ZNF575Q86XF7 245 aa10.29□□□□□ -0.76
NPHP4-201ENST00000378156 EIF4EBP3O60516 100 aaPredicted RBP10.29□□□□□ -0.76
NPHP4-201ENST00000378156 SMIM29Q86T20 159 aa10.28□□□□□ -0.76
NPHP4-201ENST00000378156 C22orf24Q9Y442 160 aa10.28□□□□□ -0.76
NPHP4-201ENST00000378156 MDFIQ99750 246 aa10.28□□□□□ -0.76
NPHP4-201ENST00000378156 CIRBP-AS1Q8TBR5 109 aa10.27□□□□□ -0.77
NPHP4-201ENST00000378156 H3BPC8 53 aa10.26□□□□□ -0.77
NPHP4-201ENST00000378156 TP53AIP1Q9HCN2 124 aa10.26□□□□□ -0.77
NPHP4-201ENST00000378156 C6orf48Q9UBA6 75 aa10.26□□□□□ -0.77
NPHP4-201ENST00000378156 MAP1AP78559 2803 aaPredicted RBP10.26□□□□□ -0.77
NPHP4-201ENST00000378156 DEFB116Q30KQ4 102 aa10.26□□□□□ -0.77
NPHP4-201ENST00000378156 PRLHP81277 87 aa10.25□□□□□ -0.77
NPHP4-201ENST00000378156 LOC110117498A0A087WWA1 95 aa10.25□□□□□ -0.77
NPHP4-201ENST00000378156 FRYQ5TBA9 3013 aa10.25□□□□□ -0.77
NPHP4-201ENST00000378156 AKAP13Q12802 2813 aa10.24□□□□□ -0.77
NPHP4-201ENST00000378156 KIAA0087Q14695 138 aa10.24□□□□□ -0.77
NPHP4-201ENST00000378156 Q6ZQT0 140 aa10.23□□□□□ -0.77
NPHP4-201ENST00000378156 NBEAQ8NFP9 2946 aa10.22□□□□□ -0.77
NPHP4-201ENST00000378156 CSNK1G2-AS1Q8NCQ2 148 aa10.21□□□□□ -0.78
NPHP4-201ENST00000378156 SMCR5Q8TEV8 140 aa10.21□□□□□ -0.78
NPHP4-201ENST00000378156 LINC00167Q96N53 147 aa10.2□□□□□ -0.78
NPHP4-201ENST00000378156 A0A1B0GU69 56 aa10.19□□□□□ -0.78
NPHP4-201ENST00000378156 SPINK1P00995 79 aa10.19□□□□□ -0.78
NPHP4-201ENST00000378156 LINC00588Q9Y4M8 146 aa10.18□□□□□ -0.78
NPHP4-201ENST00000378156 ELOF1P60002 83 aaKnown RBP10.18□□□□□ -0.78
NPHP4-201ENST00000378156 ACYP2P14621 99 aa10.17□□□□□ -0.78
NPHP4-201ENST00000378156 SPAG11AQ6PDA7 123 aa10.16□□□□□ -0.78
NPHP4-201ENST00000378156 GIG44P09565 113 aaPredicted RBP10.16□□□□□ -0.78
NPHP4-201ENST00000378156 Q8NBF4 154 aa10.16□□□□□ -0.78
NPHP4-201ENST00000378156 SPEGQ15772 3267 aa10.15□□□□□ -0.78
NPHP4-201ENST00000378156 ERC2-IT1O76042 136 aa10.15□□□□□ -0.79
NPHP4-201ENST00000378156 C19orf73Q9NVV2 129 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms