RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 PET117Q6UWS5 81 aa8.22□□□□□ -1.09
VPS28-202ENST00000377348 PLEKHB2Q96CS7 222 aa8.22□□□□□ -1.09
VPS28-202ENST00000377348 KRTAP29-1A8MX34 341 aaPredicted RBP8.21□□□□□ -1.1
VPS28-202ENST00000377348 J3QQQ9 107 aa8.21□□□□□ -1.1
VPS28-202ENST00000377348 MEIG1Q5JSS6 88 aa8.21□□□□□ -1.1
VPS28-202ENST00000377348 MRPL55Q7Z7F7 128 aaKnown RBP8.21□□□□□ -1.1
VPS28-202ENST00000377348 HIST1H2BLQ99880 126 aa8.21□□□□□ -1.1
VPS28-202ENST00000377348 PLA2G2DQ9UNK4 145 aa8.21□□□□□ -1.1
VPS28-202ENST00000377348 MYMXA0A1B0GTQ4 84 aa8.2□□□□□ -1.1
VPS28-202ENST00000377348 GAGE10A6NGK3 116 aa8.2□□□□□ -1.1
VPS28-202ENST00000377348 SRSF9Q13242 221 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS28-202ENST00000377348 Q8NDZ9 215 aa8.2□□□□□ -1.1
VPS28-202ENST00000377348 TP73-AS1Q9UF72 201 aa8.2□□□□□ -1.1
VPS28-202ENST00000377348 J3QL48 77 aa8.19□□□□□ -1.1
VPS28-202ENST00000377348 LGALS3P17931 250 aaKnown RBP8.19□□□□□ -1.1
VPS28-202ENST00000377348 HERV-K104P63124 156 aa8.19□□□□□ -1.1
VPS28-202ENST00000377348 LBHQ53QV2 105 aaPredicted RBP8.19□□□□□ -1.1
VPS28-202ENST00000377348 LINC00167Q96N53 147 aa8.19□□□□□ -1.1
VPS28-202ENST00000377348 IGLV5-37A0A075B6J1 123 aa8.18□□□□□ -1.1
VPS28-202ENST00000377348 RPL37AP8A6NKH3 93 aa8.18□□□□□ -1.1
VPS28-202ENST00000377348 E9PLD3 99 aa8.18□□□□□ -1.1
VPS28-202ENST00000377348 IGLV7-43P04211 117 aa8.18□□□□□ -1.1
VPS28-202ENST00000377348 VPREB1P12018 145 aa8.18□□□□□ -1.1
VPS28-202ENST00000377348 NKAPP1Q8N9T2 125 aa8.18□□□□□ -1.1
VPS28-202ENST00000377348 OXTP01178 125 aa8.17□□□□□ -1.1
VPS28-202ENST00000377348 SPINK6Q6UWN8 80 aa8.17□□□□□ -1.1
VPS28-202ENST00000377348 MIR7-3HGQ8N6C7 128 aa8.17□□□□□ -1.1
VPS28-202ENST00000377348 DAND5Q8N907 189 aa8.16□□□□□ -1.1
VPS28-202ENST00000377348 LOC105371267A0A1B0GV96 52 aa8.15□□□□□ -1.1
VPS28-202ENST00000377348 NMUP48645 174 aa8.15□□□□□ -1.1
VPS28-202ENST00000377348 ATOH7Q8N100 152 aa8.15□□□□□ -1.1
VPS28-202ENST00000377348 TNXBP22105 4242 aa8.14□□□□□ -1.11
VPS28-202ENST00000377348 IGKV2-28A0A075B6P5 120 aa8.14□□□□□ -1.11
VPS28-202ENST00000377348 IGKV2D-26A0A0A0MRZ7 120 aa8.14□□□□□ -1.11
VPS28-202ENST00000377348 C20orf202A1L168 122 aa8.14□□□□□ -1.11
VPS28-202ENST00000377348 LINC00587B1AMM8 73 aa8.14□□□□□ -1.11
VPS28-202ENST00000377348 IGKV2D-28P01615 120 aa8.14□□□□□ -1.11
VPS28-202ENST00000377348 S100A2P29034 98 aa8.14□□□□□ -1.11
VPS28-202ENST00000377348 RPL24P83731 157 aaKnown RBP8.14□□□□□ -1.11
VPS28-202ENST00000377348 A0A0J9YXY3 114 aa8.13□□□□□ -1.11
VPS28-202ENST00000377348 BOD1L2Q8IYS8 172 aa8.13□□□□□ -1.11
VPS28-202ENST00000377348 TTTY13Q9BZ97 58 aa8.13□□□□□ -1.11
VPS28-202ENST00000377348 MT1HL1P0DM35 61 aa8.12□□□□□ -1.11
VPS28-202ENST00000377348 IGLV1-50A0A075B6I6 118 aa8.11□□□□□ -1.11
VPS28-202ENST00000377348 ANKRD39Q53RE8 183 aa8.11□□□□□ -1.11
VPS28-202ENST00000377348 REG3GQ6UW15 175 aa8.11□□□□□ -1.11
VPS28-202ENST00000377348 H0Y9J4 135 aa8.1□□□□□ -1.11
VPS28-202ENST00000377348 NCR3O14931 201 aa8.1□□□□□ -1.11
VPS28-202ENST00000377348 BCE1O60756 84 aa8.1□□□□□ -1.11
VPS28-202ENST00000377348 NPC2P61916 151 aa8.1□□□□□ -1.11
VPS28-202ENST00000377348 ADAMTSL4-AS1Q5T5F5 129 aa8.1□□□□□ -1.11
VPS28-202ENST00000377348 DIRC1Q969H9 104 aa8.1□□□□□ -1.11
VPS28-202ENST00000377348 ZNF815PA8K554 130 aa8.09□□□□□ -1.11
VPS28-202ENST00000377348 TMEM238C9JI98 176 aa8.09□□□□□ -1.11
VPS28-202ENST00000377348 ZNF861PO60384 105 aa8.09□□□□□ -1.11
VPS28-202ENST00000377348 LINC01600Q96MT4 127 aa8.09□□□□□ -1.11
VPS28-202ENST00000377348 M0R378 163 aa8.08□□□□□ -1.12
VPS28-202ENST00000377348 SOSTDC1Q6X4U4 206 aa8.08□□□□□ -1.12
VPS28-202ENST00000377348 LOC107984156A0A0G2JMH3 177 aa8.07□□□□□ -1.12
VPS28-202ENST00000377348 EIF4EBP3O60516 100 aaPredicted RBP8.07□□□□□ -1.12
VPS28-202ENST00000377348 ARL17AQ8IVW1 177 aa8.07□□□□□ -1.12
VPS28-202ENST00000377348 LITAFQ99732 161 aa8.07□□□□□ -1.12
VPS28-202ENST00000377348 TMEM126AQ9H061 195 aa8.07□□□□□ -1.12
VPS28-202ENST00000377348 PYY3Q5JQD4 70 aa8.06□□□□□ -1.12
VPS28-202ENST00000377348 MIEN1Q9BRT3 115 aa8.06□□□□□ -1.12
VPS28-202ENST00000377348 RPL28P46779 137 aaKnown RBP8.05□□□□□ -1.12
VPS28-202ENST00000377348 UBE2AP49459 152 aa8.05□□□□□ -1.12
VPS28-202ENST00000377348 KRTAP13-1Q8IUC0 172 aa8.05□□□□□ -1.12
VPS28-202ENST00000377348 PCP2Q8IVA1 136 aa8.05□□□□□ -1.12
VPS28-202ENST00000377348 TRBV10-3A0A0K0K1G6 114 aa8.04□□□□□ -1.12
VPS28-202ENST00000377348 KRTAP1-4P0C5Y4 121 aa8.04□□□□□ -1.12
VPS28-202ENST00000377348 AKR1D1P51857 326 aa8.04□□□□□ -1.12
VPS28-202ENST00000377348 PRLHP81277 87 aa8.04□□□□□ -1.12
VPS28-202ENST00000377348 JOSD1Q15040 202 aaPredicted RBP8.04□□□□□ -1.12
VPS28-202ENST00000377348 FAM19A1Q7Z5A9 133 aa8.04□□□□□ -1.12
VPS28-202ENST00000377348 TIMM17BO60830 172 aa8.03□□□□□ -1.12
VPS28-202ENST00000377348 KRTAP10-8P60410 259 aa8.03□□□□□ -1.12
VPS28-202ENST00000377348 HMCN2Q8NDA2 5059 aa8.02□□□□□ -1.13
VPS28-202ENST00000377348 SCGB1D1O95968 90 aa8.02□□□□□ -1.13
VPS28-202ENST00000377348 SCGB1D4Q6XE38 83 aa8.02□□□□□ -1.13
VPS28-202ENST00000377348 PRR26Q8N8Z3 221 aa8.02□□□□□ -1.13
VPS28-202ENST00000377348 LINC00308Q8TCZ7 52 aa8.02□□□□□ -1.13
VPS28-202ENST00000377348 SPANXB1Q9NS25 103 aaPredicted RBP8.02□□□□□ -1.13
VPS28-202ENST00000377348 PRYO14603 147 aa8.01□□□□□ -1.13
VPS28-202ENST00000377348 TRBV10-2A0A0K0K1G8 114 aa8□□□□□ -1.13
VPS28-202ENST00000377348 NDUFC2O95298 119 aa8□□□□□ -1.13
VPS28-202ENST00000377348 DDTP30046 118 aa8□□□□□ -1.13
VPS28-202ENST00000377348 KCNQ1DNQ9H478 68 aa8□□□□□ -1.13
VPS28-202ENST00000377348 HSBP1L1C9JCN9 74 aa7.99□□□□□ -1.13
VPS28-202ENST00000377348 S100A7L2Q5SY68 101 aa7.98□□□□□ -1.13
VPS28-202ENST00000377348 SPANXDQ9BXN6 97 aa7.98□□□□□ -1.13
VPS28-202ENST00000377348 SPANXCQ9NY87 97 aa7.98□□□□□ -1.13
VPS28-202ENST00000377348 ANAPC11Q9NYG5 84 aa7.98□□□□□ -1.13
VPS28-202ENST00000377348 KRTAP4-16G5E9R7 235 aaPredicted RBP7.97□□□□□ -1.13
VPS28-202ENST00000377348 IGLV6-57P01721 117 aa7.97□□□□□ -1.13
VPS28-202ENST00000377348 SPRR1AP35321 89 aa7.97□□□□□ -1.13
VPS28-202ENST00000377348 HIGD2AQ9BW72 106 aa7.97□□□□□ -1.13
VPS28-202ENST00000377348 ETDCA0A1B0GVM5 59 aa7.96□□□□□ -1.14
VPS28-202ENST00000377348 SMIM6P0DI80 62 aa7.96□□□□□ -1.14
VPS28-202ENST00000377348 LINC00337Q8N6G1 96 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms