RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 C20orf197Q8N268 126 aa14.37□□□□□ -0.11
UPF3A-202ENST00000375299 MUC7Q8TAX7 377 aa14.36□□□□□ -0.11
UPF3A-202ENST00000375299 M0R2N4 97 aa14.35□□□□□ -0.11
UPF3A-202ENST00000375299 BCE1O60756 84 aa14.34□□□□□ -0.11
UPF3A-202ENST00000375299 C10orf25Q5T742 122 aa14.34□□□□□ -0.11
UPF3A-202ENST00000375299 UNQ6190/PRO20217Q6UXQ8 127 aa14.34□□□□□ -0.11
UPF3A-202ENST00000375299 IGLV6-57P01721 117 aa14.33□□□□□ -0.11
UPF3A-202ENST00000375299 LINC01547P58512 204 aaPredicted RBP14.33□□□□□ -0.11
UPF3A-202ENST00000375299 SPAG11BQ08648 103 aa14.33□□□□□ -0.11
UPF3A-202ENST00000375299 ITPR2Q14571 2701 aa14.33□□□□□ -0.12
UPF3A-202ENST00000375299 LYRM9A8MSI8 78 aa14.32□□□□□ -0.12
UPF3A-202ENST00000375299 Q6ZVQ6 151 aa14.32□□□□□ -0.12
UPF3A-202ENST00000375299 TRAV7A0A075B6U4 112 aa14.32□□□□□ -0.12
UPF3A-202ENST00000375299 LINC00482Q8N8I6 264 aa14.31□□□□□ -0.12
UPF3A-202ENST00000375299 Q6ZQY7 126 aa14.31□□□□□ -0.12
UPF3A-202ENST00000375299 A0A0J9YWU9 116 aa14.3□□□□□ -0.12
UPF3A-202ENST00000375299 IGHV4-30-4P0DP06 118 aa14.3□□□□□ -0.12
UPF3A-202ENST00000375299 HAMPP81172 84 aa14.3□□□□□ -0.12
UPF3A-202ENST00000375299 Q5XG85 94 aa14.3□□□□□ -0.12
UPF3A-202ENST00000375299 FN1P02751 2386 aaKnown RBP14.29□□□□□ -0.12
UPF3A-202ENST00000375299 FAM236DA0A1B0GTK5 79 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 H3BQ85 93 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 FAM236CP0DP71 79 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 C9orf66Q5T8R8 295 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 PDE6GP18545 87 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 CYSRT1A8MQ03 144 aa14.28□□□□□ -0.12
UPF3A-202ENST00000375299 KRTAP10-3P60369 221 aa14.28□□□□□ -0.12
UPF3A-202ENST00000375299 SPATA3Q8NHX4 192 aa14.28□□□□□ -0.12
UPF3A-202ENST00000375299 C4orf26Q17RF5 130 aa14.26□□□□□ -0.13
UPF3A-202ENST00000375299 CXCL6P80162 114 aa14.25□□□□□ -0.13
UPF3A-202ENST00000375299 H7BZZ5 65 aa14.25□□□□□ -0.13
UPF3A-202ENST00000375299 DEFB4AO15263 64 aa14.25□□□□□ -0.13
UPF3A-202ENST00000375299 TRAV10A0A0B4J240 114 aa14.24□□□□□ -0.13
UPF3A-202ENST00000375299 DIRC1Q969H9 104 aa14.24□□□□□ -0.13
UPF3A-202ENST00000375299 SMR3AQ99954 134 aa14.23□□□□□ -0.13
UPF3A-202ENST00000375299 DAD1P61803 113 aa14.22□□□□□ -0.13
UPF3A-202ENST00000375299 GVQW2A0A096LPI5 108 aaPredicted RBP14.22□□□□□ -0.13
UPF3A-202ENST00000375299 KLKP1Q107X0 134 aa14.22□□□□□ -0.13
UPF3A-202ENST00000375299 DEFB135Q30KP9 77 aa14.2□□□□□ -0.14
UPF3A-202ENST00000375299 WIPF1O43516 503 aa14.2□□□□□ -0.14
UPF3A-202ENST00000375299 HRCT1Q6UXD1 115 aa14.2□□□□□ -0.14
UPF3A-202ENST00000375299 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.2□□□□□ -0.14
UPF3A-202ENST00000375299 TRBV7-4A0A0J9YYF1 115 aa14.19□□□□□ -0.14
UPF3A-202ENST00000375299 LELP1Q5T871 98 aa14.19□□□□□ -0.14
UPF3A-202ENST00000375299 UNC79Q9P2D8 2635 aa14.19□□□□□ -0.14
UPF3A-202ENST00000375299 EPM2AB3EWF7 344 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 PRR34Q9NV39 138 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 C6orf48Q9UBA6 75 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 SERP1Q9Y6X1 66 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 KLK12Q9UKR0 248 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 GCN1Q92616 2671 aaKnown RBP14.17□□□□□ -0.14
UPF3A-202ENST00000375299 COX7BP24311 80 aa14.17□□□□□ -0.14
UPF3A-202ENST00000375299 J3QKU1 62 aa14.17□□□□□ -0.14
UPF3A-202ENST00000375299 ZNF73O43830 326 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-202ENST00000375299 XAGE1AQ9HD64 81 aa14.17□□□□□ -0.14
UPF3A-202ENST00000375299 CELA1Q9UNI1 258 aa14.16□□□□□ -0.14
UPF3A-202ENST00000375299 NBEAL2Q6ZNJ1 2754 aa14.16□□□□□ -0.14
UPF3A-202ENST00000375299 ELOF1P60002 83 aaKnown RBP14.15□□□□□ -0.14
UPF3A-202ENST00000375299 SNURFQ9Y675 71 aa14.15□□□□□ -0.14
UPF3A-202ENST00000375299 HIVEP2P31629 2446 aa14.15□□□□□ -0.14
UPF3A-202ENST00000375299 RMI2Q96E14 147 aa14.15□□□□□ -0.14
UPF3A-202ENST00000375299 HELZ2Q9BYK8 2649 aaKnown RBP14.14□□□□□ -0.15
UPF3A-202ENST00000375299 VWFP04275 2813 aa14.13□□□□□ -0.15
UPF3A-202ENST00000375299 SCXQ7RTU7 201 aa14.13□□□□□ -0.15
UPF3A-202ENST00000375299 TRBV7-6A0A0J9YX20 115 aa14.12□□□□□ -0.15
UPF3A-202ENST00000375299 HTN3P15516 51 aa14.11□□□□□ -0.15
UPF3A-202ENST00000375299 APOC4P55056 127 aa14.11□□□□□ -0.15
UPF3A-202ENST00000375299 Q8NAQ8 132 aa14.1□□□□□ -0.15
UPF3A-202ENST00000375299 FASNP49327 2511 aaKnown RBP14.1□□□□□ -0.15
UPF3A-202ENST00000375299 F8WEM9 126 aa14.1□□□□□ -0.15
UPF3A-202ENST00000375299 TM2D3Q9BRN9 247 aa14.1□□□□□ -0.15
UPF3A-202ENST00000375299 VPREB1P12018 145 aa14.08□□□□□ -0.16
UPF3A-202ENST00000375299 MIFP14174 115 aa14.07□□□□□ -0.16
UPF3A-202ENST00000375299 SPART-AS1P0CW21 52 aa14.06□□□□□ -0.16
UPF3A-202ENST00000375299 NDUFC1O43677 76 aa14.05□□□□□ -0.16
UPF3A-202ENST00000375299 M0R378 163 aa14.04□□□□□ -0.16
UPF3A-202ENST00000375299 CAMK2N2Q96S95 79 aa14.04□□□□□ -0.16
UPF3A-202ENST00000375299 NREPQ16612 68 aa14.03□□□□□ -0.16
UPF3A-202ENST00000375299 HIGD2BQ4VC39 106 aa14.03□□□□□ -0.16
UPF3A-202ENST00000375299 LINC00528Q8N1L1 170 aa14.03□□□□□ -0.16
UPF3A-202ENST00000375299 EGFEM1PQ0D2K5 195 aa14.01□□□□□ -0.17
UPF3A-202ENST00000375299 BPY2O14599 106 aa14□□□□□ -0.17
UPF3A-202ENST00000375299 SMIM26A0A096LP01 95 aa13.98□□□□□ -0.17
UPF3A-202ENST00000375299 ATP5EP56381 51 aaPredicted RBP13.98□□□□□ -0.17
UPF3A-202ENST00000375299 Q6ZRU5 148 aa13.98□□□□□ -0.17
UPF3A-202ENST00000375299 TENM1Q9UKZ4 2725 aa13.98□□□□□ -0.17
UPF3A-202ENST00000375299 OTOGQ6ZRI0 2925 aa13.97□□□□□ -0.17
UPF3A-202ENST00000375299 INAFM1C9JVW0 142 aa13.97□□□□□ -0.17
UPF3A-202ENST00000375299 TMEM254Q8TBM7 123 aa13.97□□□□□ -0.17
UPF3A-202ENST00000375299 ERC2-IT1O76042 136 aa13.96□□□□□ -0.17
UPF3A-202ENST00000375299 IGKV4-1P06312 121 aa13.96□□□□□ -0.17
UPF3A-202ENST00000375299 KRTAP26-1Q6PEX3 210 aa13.95□□□□□ -0.18
UPF3A-202ENST00000375299 FP248Q71RG6 208 aaPredicted RBP13.95□□□□□ -0.18
UPF3A-202ENST00000375299 Q8N9L7 120 aa13.95□□□□□ -0.18
UPF3A-202ENST00000375299 WFDC10BQ8IUB3 73 aa13.94□□□□□ -0.18
UPF3A-202ENST00000375299 C15orf56Q8N910 161 aa13.93□□□□□ -0.18
UPF3A-202ENST00000375299 MRAPQ8TCY5 172 aa13.91□□□□□ -0.18
UPF3A-202ENST00000375299 HECTD1Q9ULT8 2610 aa13.91□□□□□ -0.18
UPF3A-202ENST00000375299 NSD1Q96L73 2696 aaPredicted RBP13.91□□□□□ -0.18
UPF3A-202ENST00000375299 OCR1Q9BZK8 76 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms