RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 KLK12Q9UKR0 248 aa10.49□□□□□ -0.73
CCDC40-202ENST00000374876 A0A087WYN8 130 aa10.48□□□□□ -0.73
CCDC40-202ENST00000374876 LYPD5Q6UWN5 251 aa10.48□□□□□ -0.73
CCDC40-202ENST00000374876 PLECQ15149 4684 aaKnown RBP10.47□□□□□ -0.73
CCDC40-202ENST00000374876 PRR34Q9NV39 138 aa10.47□□□□□ -0.73
CCDC40-202ENST00000374876 APLNQ9ULZ1 77 aa10.47□□□□□ -0.73
CCDC40-202ENST00000374876 A0A1B0GV72 72 aa10.46□□□□□ -0.73
CCDC40-202ENST00000374876 LYSTQ99698 3801 aa10.46□□□□□ -0.73
CCDC40-202ENST00000374876 DYNC2H1Q8NCM8 4307 aaKnown RBP10.46□□□□□ -0.73
CCDC40-202ENST00000374876 SPAG11BQ08648 103 aa10.46□□□□□ -0.74
CCDC40-202ENST00000374876 C9orf116Q5BN46 136 aaPredicted RBP10.46□□□□□ -0.74
CCDC40-202ENST00000374876 C15orf53Q8NAA6 179 aa10.46□□□□□ -0.74
CCDC40-202ENST00000374876 NDUFC2O95298 119 aa10.45□□□□□ -0.74
CCDC40-202ENST00000374876 PRR3P79522 188 aaKnown RBP10.44□□□□□ -0.74
CCDC40-202ENST00000374876 ENHOQ6UWT2 76 aa10.44□□□□□ -0.74
CCDC40-202ENST00000374876 C22orf24Q9Y442 160 aa10.44□□□□□ -0.74
CCDC40-202ENST00000374876 H3BNG1 76 aa10.43□□□□□ -0.74
CCDC40-202ENST00000374876 LECT2O14960 151 aa10.43□□□□□ -0.74
CCDC40-202ENST00000374876 ACYP1P07311 99 aa10.43□□□□□ -0.74
CCDC40-202ENST00000374876 GAGE2BQ13066 116 aa10.43□□□□□ -0.74
CCDC40-202ENST00000374876 GAGE2EQ4V326 116 aa10.43□□□□□ -0.74
CCDC40-202ENST00000374876 C6orf223Q8N319 242 aa10.43□□□□□ -0.74
CCDC40-202ENST00000374876 GAGE2DQ9UEU5 116 aa10.43□□□□□ -0.74
CCDC40-202ENST00000374876 KMT2CQ8NEZ4 4911 aaKnown RBP10.43□□□□□ -0.74
CCDC40-202ENST00000374876 INAFM2P0DMQ5 153 aa10.42□□□□□ -0.74
CCDC40-202ENST00000374876 UNQ6190/PRO20217Q6UXQ8 127 aa10.42□□□□□ -0.74
CCDC40-202ENST00000374876 TTC32Q5I0X7 151 aa10.41□□□□□ -0.74
CCDC40-202ENST00000374876 C10orf25Q5T742 122 aa10.41□□□□□ -0.74
CCDC40-202ENST00000374876 TMEM126AQ9H061 195 aa10.41□□□□□ -0.74
CCDC40-202ENST00000374876 LY6G6CO95867 125 aa10.41□□□□□ -0.74
CCDC40-202ENST00000374876 LINC00526Q96FQ7 95 aa10.41□□□□□ -0.74
CCDC40-202ENST00000374876 WFDC10BQ8IUB3 73 aa10.4□□□□□ -0.75
CCDC40-202ENST00000374876 LCE6AA0A183 80 aa10.39□□□□□ -0.75
CCDC40-202ENST00000374876 LINC00476Q8WZB0 136 aa10.39□□□□□ -0.75
CCDC40-202ENST00000374876 NCR3O14931 201 aa10.38□□□□□ -0.75
CCDC40-202ENST00000374876 Q6Q795 121 aa10.38□□□□□ -0.75
CCDC40-202ENST00000374876 S100A7L2Q5SY68 101 aa10.37□□□□□ -0.75
CCDC40-202ENST00000374876 SLPIP03973 132 aa10.36□□□□□ -0.75
CCDC40-202ENST00000374876 ORMDL1Q9P0S3 153 aa10.36□□□□□ -0.75
CCDC40-202ENST00000374876 GAGE2AQ6NT46 116 aa10.36□□□□□ -0.75
CCDC40-202ENST00000374876 Q8NDZ9 215 aa10.36□□□□□ -0.75
CCDC40-202ENST00000374876 GVQW2A0A096LPI5 108 aaPredicted RBP10.35□□□□□ -0.75
CCDC40-202ENST00000374876 ANAPC13Q9BS18 74 aa10.35□□□□□ -0.75
CCDC40-202ENST00000374876 A0A1B0GX51 115 aa10.34□□□□□ -0.75
CCDC40-202ENST00000374876 ESRGQ1W209 222 aa10.33□□□□□ -0.76
CCDC40-202ENST00000374876 Q8N814 137 aa10.33□□□□□ -0.76
CCDC40-202ENST00000374876 C6orf48Q9UBA6 75 aa10.33□□□□□ -0.76
CCDC40-202ENST00000374876 ZNF561-AS1K7EIQ3 104 aa10.33□□□□□ -0.76
CCDC40-202ENST00000374876 C6orf99Q4VX62 202 aa10.33□□□□□ -0.76
CCDC40-202ENST00000374876 C9orf129Q5T035 196 aaKnown RBP10.33□□□□□ -0.76
CCDC40-202ENST00000374876 C14orf132Q9NPU4 83 aa10.33□□□□□ -0.76
CCDC40-202ENST00000374876 NDUFV3P56181 108 aaKnown RBP10.32□□□□□ -0.76
CCDC40-202ENST00000374876 UBE2DNLQ8IWF7 75 aa10.32□□□□□ -0.76
CCDC40-202ENST00000374876 OBSCN-AS1Q96MR7 158 aa10.32□□□□□ -0.76
CCDC40-202ENST00000374876 LINC00167Q96N53 147 aa10.32□□□□□ -0.76
CCDC40-202ENST00000374876 KMT2AQ03164 3969 aa10.32□□□□□ -0.76
CCDC40-202ENST00000374876 HYDINQ4G0P3 5121 aa10.31□□□□□ -0.76
CCDC40-202ENST00000374876 SMCR5Q8TEV8 140 aa10.31□□□□□ -0.76
CCDC40-202ENST00000374876 HIGD2BQ4VC39 106 aa10.31□□□□□ -0.76
CCDC40-202ENST00000374876 LINC00643Q86TS7 51 aa10.31□□□□□ -0.76
CCDC40-202ENST00000374876 LINC00588Q9Y4M8 146 aa10.31□□□□□ -0.76
CCDC40-202ENST00000374876 SACSQ9NZJ4 4579 aa10.3□□□□□ -0.76
CCDC40-202ENST00000374876 ALMS1Q8TCU4 4167 aa10.3□□□□□ -0.76
CCDC40-202ENST00000374876 TRBV7-7A0A0K0K1E9 115 aa10.3□□□□□ -0.76
CCDC40-202ENST00000374876 RPL18AQ02543 176 aaKnown RBP10.3□□□□□ -0.76
CCDC40-202ENST00000374876 CAMK2N2Q96S95 79 aa10.3□□□□□ -0.76
CCDC40-202ENST00000374876 KRTAP26-1Q6PEX3 210 aa10.29□□□□□ -0.76
CCDC40-202ENST00000374876 SDIM1Q6ZPB5 146 aa10.29□□□□□ -0.76
CCDC40-202ENST00000374876 IGLV6-57P01721 117 aa10.28□□□□□ -0.76
CCDC40-202ENST00000374876 XAGE1AQ9HD64 81 aa10.28□□□□□ -0.76
CCDC40-202ENST00000374876 RYR3Q15413 4870 aa10.28□□□□□ -0.76
CCDC40-202ENST00000374876 TMEM256-PLSCR3K7ERE1 68 aa10.28□□□□□ -0.76
CCDC40-202ENST00000374876 LINC01556Q5JQF7 62 aa10.28□□□□□ -0.76
CCDC40-202ENST00000374876 C1orf43Q9BWL3 253 aa10.28□□□□□ -0.76
CCDC40-202ENST00000374876 LINC00575Q6W349 94 aa10.26□□□□□ -0.77
CCDC40-202ENST00000374876 IMUPQ9GZP8 106 aa10.26□□□□□ -0.77
CCDC40-202ENST00000374876 DNAH1Q9P2D7 4330 aa10.26□□□□□ -0.77
CCDC40-202ENST00000374876 RYR2Q92736 4967 aa10.26□□□□□ -0.77
CCDC40-202ENST00000374876 C15orf56Q8N910 161 aa10.26□□□□□ -0.77
CCDC40-202ENST00000374876 JMJD7-PLA2G4BH0Y9G9 81 aa10.25□□□□□ -0.77
CCDC40-202ENST00000374876 VPS13DQ5THJ4 4388 aa10.25□□□□□ -0.77
CCDC40-202ENST00000374876 IGKV2D-24A0A075B6R9 120 aa10.24□□□□□ -0.77
CCDC40-202ENST00000374876 M0R2N4 97 aa10.24□□□□□ -0.77
CCDC40-202ENST00000374876 hADV29S1A0JD25 119 aa10.24□□□□□ -0.77
CCDC40-202ENST00000374876 Q6ZRU5 148 aa10.24□□□□□ -0.77
CCDC40-202ENST00000374876 C2orf48Q96LS8 159 aa10.24□□□□□ -0.77
CCDC40-202ENST00000374876 TRBV10-3A0A0K0K1G6 114 aa10.23□□□□□ -0.77
CCDC40-202ENST00000374876 TRAV23DV6A0A075B6W5 121 aa10.23□□□□□ -0.77
CCDC40-202ENST00000374876 NDUFC2-KCTD14E9PQ53 114 aa10.21□□□□□ -0.77
CCDC40-202ENST00000374876 DIRC1Q969H9 104 aa10.21□□□□□ -0.78
CCDC40-202ENST00000374876 CCKP06307 115 aa10.2□□□□□ -0.78
CCDC40-202ENST00000374876 DNAH10OSP0CZ25 163 aa10.2□□□□□ -0.78
CCDC40-202ENST00000374876 UPK3BQ9BT76 320 aa10.2□□□□□ -0.78
CCDC40-202ENST00000374876 LINC00846Q9NV44 126 aa10.2□□□□□ -0.78
CCDC40-202ENST00000374876 FAM236AA0A1B0GUQ0 79 aa10.19□□□□□ -0.78
CCDC40-202ENST00000374876 FAM236BA0A1B0GV22 79 aa10.19□□□□□ -0.78
CCDC40-202ENST00000374876 F8WDY8 70 aa10.19□□□□□ -0.78
CCDC40-202ENST00000374876 VPREB1P12018 145 aa10.19□□□□□ -0.78
CCDC40-202ENST00000374876 ZNF73O43830 326 aaPredicted RBP10.18□□□□□ -0.78
CCDC40-202ENST00000374876 M0R378 163 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms