RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 LOC107984640A0A0U1RRK4 108 aa14.13□□□□□ -0.15
HOXA4-201ENST00000360046 GAGE10A6NGK3 116 aa14.13□□□□□ -0.15
HOXA4-201ENST00000360046 TLX1NBP0CAT3 122 aa14.13□□□□□ -0.15
HOXA4-201ENST00000360046 XAGE1AQ9HD64 81 aa14.13□□□□□ -0.15
HOXA4-201ENST00000360046 FUSP35637 526 aaKnown RBP eCLIP14.12□□□□□ -0.15
HOXA4-201ENST00000360046 LINC00336Q6ZUF6 198 aa14.12□□□□□ -0.15
HOXA4-201ENST00000360046 C9orf163Q8N9P6 203 aa14.12□□□□□ -0.15
HOXA4-201ENST00000360046 FAT2Q9NYQ8 4349 aa14.11□□□□□ -0.15
HOXA4-201ENST00000360046 LINC01620Q4KN68 170 aa14.11□□□□□ -0.15
HOXA4-201ENST00000360046 TMEM238LA0A1B0GVL6 79 aa14.1□□□□□ -0.15
HOXA4-201ENST00000360046 A4D1N5 150 aa14.1□□□□□ -0.15
HOXA4-201ENST00000360046 A6NJY4 79 aa14.1□□□□□ -0.15
HOXA4-201ENST00000360046 GAGE2BQ13066 116 aa14.1□□□□□ -0.15
HOXA4-201ENST00000360046 IGLV5-52A0A0A0MRZ9 124 aa14.1□□□□□ -0.15
HOXA4-201ENST00000360046 H3BUT2 72 aa14.1□□□□□ -0.15
HOXA4-201ENST00000360046 A0A1W2PPM0 123 aa14.08□□□□□ -0.16
HOXA4-201ENST00000360046 FABP2P12104 132 aa14.08□□□□□ -0.16
HOXA4-201ENST00000360046 K7EP34 96 aa14.07□□□□□ -0.16
HOXA4-201ENST00000360046 PPDPFQ9H3Y8 114 aa14.07□□□□□ -0.16
HOXA4-201ENST00000360046 NHP2Q9NX24 153 aaKnown RBP14.07□□□□□ -0.16
HOXA4-201ENST00000360046 LOC107984156A0A0G2JMH3 177 aa14.07□□□□□ -0.16
HOXA4-201ENST00000360046 ARL17AQ8IVW1 177 aa14.07□□□□□ -0.16
HOXA4-201ENST00000360046 RAB37Q96AX2 223 aa14.06□□□□□ -0.16
HOXA4-201ENST00000360046 PKIGQ9Y2B9 76 aa14.06□□□□□ -0.16
HOXA4-201ENST00000360046 DNAH11Q96DT5 4516 aa14.06□□□□□ -0.16
HOXA4-201ENST00000360046 IGKV2-24A0A0C4DH68 120 aa14.05□□□□□ -0.16
HOXA4-201ENST00000360046 C9orf129Q5T035 196 aaKnown RBP14.05□□□□□ -0.16
HOXA4-201ENST00000360046 A0A096LNI7 61 aa14.04□□□□□ -0.16
HOXA4-201ENST00000360046 A0A1B0GWB2 263 aa14.04□□□□□ -0.16
HOXA4-201ENST00000360046 KRTAP10-2P60368 255 aa14.04□□□□□ -0.16
HOXA4-201ENST00000360046 C16orf90A8MZG2 172 aa14.03□□□□□ -0.16
HOXA4-201ENST00000360046 SDIM1Q6ZPB5 146 aa14.03□□□□□ -0.16
HOXA4-201ENST00000360046 K7ERJ3 54 aa14.02□□□□□ -0.16
HOXA4-201ENST00000360046 SPCS1Q9Y6A9 102 aa14.02□□□□□ -0.16
HOXA4-201ENST00000360046 PKD1P98161 4303 aa14.02□□□□□ -0.17
HOXA4-201ENST00000360046 CFC1BP0CG36 223 aa14.01□□□□□ -0.17
HOXA4-201ENST00000360046 CFC1P0CG37 223 aa14.01□□□□□ -0.17
HOXA4-201ENST00000360046 Q8NDZ9 215 aa14.01□□□□□ -0.17
HOXA4-201ENST00000360046 PGPEP1Q9NXJ5 209 aa14.01□□□□□ -0.17
HOXA4-201ENST00000360046 CBY1Q9Y3M2 126 aa14□□□□□ -0.17
HOXA4-201ENST00000360046 NDUFC2O95298 119 aa13.99□□□□□ -0.17
HOXA4-201ENST00000360046 CHTF8P0CG12 524 aa13.99□□□□□ -0.17
HOXA4-201ENST00000360046 PRR3P79522 188 aaKnown RBP13.99□□□□□ -0.17
HOXA4-201ENST00000360046 NCR3O14931 201 aa13.98□□□□□ -0.17
HOXA4-201ENST00000360046 A0A0B4J2C4 111 aa13.98□□□□□ -0.17
HOXA4-201ENST00000360046 IGKV2-28A0A075B6P5 120 aa13.97□□□□□ -0.17
HOXA4-201ENST00000360046 FAM168BA1KXE4 195 aa13.97□□□□□ -0.17
HOXA4-201ENST00000360046 IGKV2D-28P01615 120 aa13.97□□□□□ -0.17
HOXA4-201ENST00000360046 VPREB1P12018 145 aa13.96□□□□□ -0.17
HOXA4-201ENST00000360046 SERTAD4-AS1Q5TG53 156 aa13.95□□□□□ -0.18
HOXA4-201ENST00000360046 LINC00474Q9P2X8 69 aa13.95□□□□□ -0.18
HOXA4-201ENST00000360046 DNAH5Q8TE73 4624 aa13.95□□□□□ -0.18
HOXA4-201ENST00000360046 FAM19A5Q7Z5A7 132 aaPredicted RBP13.95□□□□□ -0.18
HOXA4-201ENST00000360046 K7ERU9 68 aa13.94□□□□□ -0.18
HOXA4-201ENST00000360046 LINC00337Q8N6G1 96 aa13.94□□□□□ -0.18
HOXA4-201ENST00000360046 NAA38Q9BRA0 125 aaKnown RBP13.94□□□□□ -0.18
HOXA4-201ENST00000360046 PRO1854Q9UHT4 67 aa13.94□□□□□ -0.18
HOXA4-201ENST00000360046 A0A1B0GVY2 172 aa13.93□□□□□ -0.18
HOXA4-201ENST00000360046 OCIAD2Q56VL3 154 aa13.93□□□□□ -0.18
HOXA4-201ENST00000360046 NKAPP1Q8N9T2 125 aa13.93□□□□□ -0.18
HOXA4-201ENST00000360046 PLA2G2DQ9UNK4 145 aa13.93□□□□□ -0.18
HOXA4-201ENST00000360046 TRAV13-2A0A0B4J235 113 aa13.93□□□□□ -0.18
HOXA4-201ENST00000360046 OR13C6PQ8NH95 151 aa13.93□□□□□ -0.18
HOXA4-201ENST00000360046 DPH3Q96FX2 82 aa13.93□□□□□ -0.18
HOXA4-201ENST00000360046 H7C2G1 150 aa13.92□□□□□ -0.18
HOXA4-201ENST00000360046 PANO1I0J062 215 aa13.92□□□□□ -0.18
HOXA4-201ENST00000360046 RPL13AP40429 203 aaKnown RBP13.92□□□□□ -0.18
HOXA4-201ENST00000360046 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.92□□□□□ -0.18
HOXA4-201ENST00000360046 SPACA4Q8TDM5 124 aa13.9□□□□□ -0.18
HOXA4-201ENST00000360046 TRBV10-2A0A0K0K1G8 114 aa13.9□□□□□ -0.18
HOXA4-201ENST00000360046 S100A7L2Q5SY68 101 aa13.9□□□□□ -0.18
HOXA4-201ENST00000360046 A0A1W2PNN7 141 aa13.89□□□□□ -0.19
HOXA4-201ENST00000360046 LYRM7Q5U5X0 104 aa13.89□□□□□ -0.19
HOXA4-201ENST00000360046 KRTAP7-1Q8IUC3 87 aa13.89□□□□□ -0.19
HOXA4-201ENST00000360046 F8W1H4 67 aa13.88□□□□□ -0.19
HOXA4-201ENST00000360046 M0R378 163 aa13.88□□□□□ -0.19
HOXA4-201ENST00000360046 Q1RN00 199 aa13.88□□□□□ -0.19
HOXA4-201ENST00000360046 IGLV5-37A0A075B6J1 123 aa13.87□□□□□ -0.19
HOXA4-201ENST00000360046 C22orf24Q9Y442 160 aa13.87□□□□□ -0.19
HOXA4-201ENST00000360046 PKHD1P08F94 4074 aa13.86□□□□□ -0.19
HOXA4-201ENST00000360046 EPPK1P58107 5090 aaKnown RBP13.86□□□□□ -0.19
HOXA4-201ENST00000360046 M0QXV9 152 aa13.86□□□□□ -0.19
HOXA4-201ENST00000360046 TSPAN13O95857 204 aa13.85□□□□□ -0.19
HOXA4-201ENST00000360046 KRTAP10-1P60331 282 aa13.85□□□□□ -0.19
HOXA4-201ENST00000360046 TMEM126AQ9H061 195 aa13.85□□□□□ -0.19
HOXA4-201ENST00000360046 C7orf33Q8WU49 177 aa13.84□□□□□ -0.19
HOXA4-201ENST00000360046 TRBV10-3A0A0K0K1G6 114 aa13.84□□□□□ -0.19
HOXA4-201ENST00000360046 MRPL55Q7Z7F7 128 aaKnown RBP13.84□□□□□ -0.19
HOXA4-201ENST00000360046 A0A087WYN8 130 aa13.82□□□□□ -0.2
HOXA4-201ENST00000360046 IGLV6-57P01721 117 aa13.82□□□□□ -0.2
HOXA4-201ENST00000360046 LINC00167Q96N53 147 aa13.81□□□□□ -0.2
HOXA4-201ENST00000360046 RPL37AP8A6NKH3 93 aa13.79□□□□□ -0.2
HOXA4-201ENST00000360046 PSMB2P49721 201 aa13.79□□□□□ -0.2
HOXA4-201ENST00000360046 FAM30AQ9NZY2 134 aa13.79□□□□□ -0.2
HOXA4-201ENST00000360046 PHF5AQ7RTV0 110 aaKnown RBP13.78□□□□□ -0.2
HOXA4-201ENST00000360046 SMIM11BQ8TCY0 68 aa13.78□□□□□ -0.2
HOXA4-201ENST00000360046 TRBV20-1A0A075B6N2 111 aa13.78□□□□□ -0.2
HOXA4-201ENST00000360046 TRAV23DV6A0A075B6W5 121 aa13.77□□□□□ -0.21
HOXA4-201ENST00000360046 VPS25Q9BRG1 176 aa13.76□□□□□ -0.21
HOXA4-201ENST00000360046 PLAC8Q9NZF1 115 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms