RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 IGKV2-28A0A075B6P5 120 aa12.12□□□□□ -0.47
CLN3-204ENST00000357857 NDUFC2O95298 119 aa12.12□□□□□ -0.47
CLN3-204ENST00000357857 IGKV2D-28P01615 120 aa12.12□□□□□ -0.47
CLN3-204ENST00000357857 GAGE2EQ4V326 116 aa12.12□□□□□ -0.47
CLN3-204ENST00000357857 GAGE2DQ9UEU5 116 aa12.12□□□□□ -0.47
CLN3-204ENST00000357857 RPL13AP40429 203 aaKnown RBP12.11□□□□□ -0.47
CLN3-204ENST00000357857 RPL18AQ02543 176 aaKnown RBP12.11□□□□□ -0.47
CLN3-204ENST00000357857 H7C2G1 150 aa12.11□□□□□ -0.47
CLN3-204ENST00000357857 A0A087WTM6 91 aa12.1□□□□□ -0.47
CLN3-204ENST00000357857 TRAV13-2A0A0B4J235 113 aa12.1□□□□□ -0.47
CLN3-204ENST00000357857 Q1RN00 199 aa12.09□□□□□ -0.47
CLN3-204ENST00000357857 LINC00337Q8N6G1 96 aa12.09□□□□□ -0.47
CLN3-204ENST00000357857 Q8N814 137 aa12.09□□□□□ -0.47
CLN3-204ENST00000357857 LOC107984640A0A0U1RRK4 108 aa12.08□□□□□ -0.47
CLN3-204ENST00000357857 Q8NDZ9 215 aa12.08□□□□□ -0.47
CLN3-204ENST00000357857 A0A1W2PPM0 123 aa12.08□□□□□ -0.48
CLN3-204ENST00000357857 PRR3P79522 188 aaKnown RBP12.07□□□□□ -0.48
CLN3-204ENST00000357857 VAMP3Q15836 100 aa12.06□□□□□ -0.48
CLN3-204ENST00000357857 C9orf129Q5T035 196 aaKnown RBP12.06□□□□□ -0.48
CLN3-204ENST00000357857 NCR3O14931 201 aa12.05□□□□□ -0.48
CLN3-204ENST00000357857 FABP2P12104 132 aa12.05□□□□□ -0.48
CLN3-204ENST00000357857 GAGE2BQ13066 116 aa12.05□□□□□ -0.48
CLN3-204ENST00000357857 PSMB2P49721 201 aa12.04□□□□□ -0.48
CLN3-204ENST00000357857 OR13C6PQ8NH95 151 aa12.04□□□□□ -0.48
CLN3-204ENST00000357857 DNAH2Q9P225 4427 aa12.04□□□□□ -0.48
CLN3-204ENST00000357857 VPREB1P12018 145 aa12.03□□□□□ -0.48
CLN3-204ENST00000357857 C9orf163Q8N9P6 203 aa12.03□□□□□ -0.48
CLN3-204ENST00000357857 TRBV10-2A0A0K0K1G8 114 aa12.02□□□□□ -0.49
CLN3-204ENST00000357857 LCE6AA0A183 80 aa12.01□□□□□ -0.49
CLN3-204ENST00000357857 TRIAP1O43715 76 aa12□□□□□ -0.49
CLN3-204ENST00000357857 LYRM7Q5U5X0 104 aa12□□□□□ -0.49
CLN3-204ENST00000357857 PKIGQ9Y2B9 76 aa12□□□□□ -0.49
CLN3-204ENST00000357857 RTL8CO15255 209 aa12□□□□□ -0.49
CLN3-204ENST00000357857 PLA2G2DQ9UNK4 145 aa12□□□□□ -0.49
CLN3-204ENST00000357857 SPCS1Q9Y6A9 102 aa12□□□□□ -0.49
CLN3-204ENST00000357857 A0A096LNI7 61 aa11.99□□□□□ -0.49
CLN3-204ENST00000357857 C16orf90A8MZG2 172 aa11.99□□□□□ -0.49
CLN3-204ENST00000357857 SCGB1C2P0DMR2 95 aa11.99□□□□□ -0.49
CLN3-204ENST00000357857 TNP2Q05952 138 aa11.99□□□□□ -0.49
CLN3-204ENST00000357857 S100A7L2Q5SY68 101 aa11.99□□□□□ -0.49
CLN3-204ENST00000357857 TMEM126AQ9H061 195 aa11.99□□□□□ -0.49
CLN3-204ENST00000357857 SERTAD4-AS1Q5TG53 156 aa11.97□□□□□ -0.49
CLN3-204ENST00000357857 SMIM11BQ8TCY0 68 aa11.97□□□□□ -0.49
CLN3-204ENST00000357857 GAGE10A6NGK3 116 aa11.97□□□□□ -0.49
CLN3-204ENST00000357857 K7EP34 96 aa11.97□□□□□ -0.49
CLN3-204ENST00000357857 M0R378 163 aa11.97□□□□□ -0.49
CLN3-204ENST00000357857 COX6CP09669 75 aa11.97□□□□□ -0.49
CLN3-204ENST00000357857 RPL28P46779 137 aaKnown RBP11.97□□□□□ -0.49
CLN3-204ENST00000357857 DNAH17Q9UFH2 4485 aa11.97□□□□□ -0.49
CLN3-204ENST00000357857 IGKV2-24A0A0C4DH68 120 aa11.96□□□□□ -0.49
CLN3-204ENST00000357857 LINC01620Q4KN68 170 aa11.96□□□□□ -0.49
CLN3-204ENST00000357857 GTF2H5Q6ZYL4 71 aa11.96□□□□□ -0.49
CLN3-204ENST00000357857 NKAPP1Q8N9T2 125 aa11.96□□□□□ -0.49
CLN3-204ENST00000357857 FAM168BA1KXE4 195 aa11.95□□□□□ -0.5
CLN3-204ENST00000357857 IGLV6-57P01721 117 aa11.95□□□□□ -0.5
CLN3-204ENST00000357857 SDIM1Q6ZPB5 146 aa11.94□□□□□ -0.5
CLN3-204ENST00000357857 IGLV5-37A0A075B6J1 123 aa11.94□□□□□ -0.5
CLN3-204ENST00000357857 TRBV10-3A0A0K0K1G6 114 aa11.93□□□□□ -0.5
CLN3-204ENST00000357857 UBE2V1Q13404 147 aa11.93□□□□□ -0.5
CLN3-204ENST00000357857 FRAS1Q86XX4 4008 aa11.93□□□□□ -0.5
CLN3-204ENST00000357857 FUSP35637 526 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLN3-204ENST00000357857 FAM19A5Q7Z5A7 132 aaPredicted RBP11.92□□□□□ -0.5
CLN3-204ENST00000357857 HYDINQ4G0P3 5121 aa11.92□□□□□ -0.5
CLN3-204ENST00000357857 TRBV20-1A0A075B6N2 111 aa11.91□□□□□ -0.5
CLN3-204ENST00000357857 IGLV5-52A0A0A0MRZ9 124 aa11.91□□□□□ -0.5
CLN3-204ENST00000357857 TCL1BO95988 128 aa11.91□□□□□ -0.5
CLN3-204ENST00000357857 KRTAP7-1Q8IUC3 87 aa11.91□□□□□ -0.5
CLN3-204ENST00000357857 SACSQ9NZJ4 4579 aa11.91□□□□□ -0.5
CLN3-204ENST00000357857 CHTF8P0CG12 524 aa11.91□□□□□ -0.5
CLN3-204ENST00000357857 C7orf33Q8WU49 177 aa11.9□□□□□ -0.5
CLN3-204ENST00000357857 LINC00474Q9P2X8 69 aa11.9□□□□□ -0.5
CLN3-204ENST00000357857 C22orf24Q9Y442 160 aa11.89□□□□□ -0.51
CLN3-204ENST00000357857 CLEC2BQ92478 149 aa11.89□□□□□ -0.51
CLN3-204ENST00000357857 TRAV23DV6A0A075B6W5 121 aa11.88□□□□□ -0.51
CLN3-204ENST00000357857 A0A1W2PNN7 141 aa11.87□□□□□ -0.51
CLN3-204ENST00000357857 H3BMG7 143 aa11.87□□□□□ -0.51
CLN3-204ENST00000357857 ATXN8Q156A1 80 aa11.87□□□□□ -0.51
CLN3-204ENST00000357857 CBY1Q9Y3M2 126 aa11.87□□□□□ -0.51
CLN3-204ENST00000357857 HECTD4Q9Y4D8 3996 aa11.87□□□□□ -0.51
CLN3-204ENST00000357857 MRPL55Q7Z7F7 128 aaKnown RBP11.86□□□□□ -0.51
CLN3-204ENST00000357857 H0YGX0 51 aa11.86□□□□□ -0.51
CLN3-204ENST00000357857 C6orf99Q4VX62 202 aa11.86□□□□□ -0.51
CLN3-204ENST00000357857 KMT2CQ8NEZ4 4911 aaKnown RBP11.85□□□□□ -0.51
CLN3-204ENST00000357857 M0QXV9 152 aa11.85□□□□□ -0.51
CLN3-204ENST00000357857 LINC00167Q96N53 147 aa11.85□□□□□ -0.51
CLN3-204ENST00000357857 LST1O00453 97 aa11.84□□□□□ -0.51
CLN3-204ENST00000357857 PANO1I0J062 215 aa11.83□□□□□ -0.52
CLN3-204ENST00000357857 KRTAP10-2P60368 255 aa11.83□□□□□ -0.52
CLN3-204ENST00000357857 SPACA4Q8TDM5 124 aa11.83□□□□□ -0.52
CLN3-204ENST00000357857 ZNF73O43830 326 aaPredicted RBP11.83□□□□□ -0.52
CLN3-204ENST00000357857 DIRC1Q969H9 104 aa11.83□□□□□ -0.52
CLN3-204ENST00000357857 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.83□□□□□ -0.52
CLN3-204ENST00000357857 RPL37AP8A6NKH3 93 aa11.82□□□□□ -0.52
CLN3-204ENST00000357857 DPH3Q96FX2 82 aa11.82□□□□□ -0.52
CLN3-204ENST00000357857 FAM218AQ96MZ4 157 aa11.82□□□□□ -0.52
CLN3-204ENST00000357857 KCNQ1DNQ9H478 68 aa11.82□□□□□ -0.52
CLN3-204ENST00000357857 IGLV1-50A0A075B6I6 118 aa11.81□□□□□ -0.52
CLN3-204ENST00000357857 LINC00336Q6ZUF6 198 aa11.8□□□□□ -0.52
CLN3-204ENST00000357857 PRYO14603 147 aa11.79□□□□□ -0.52
CLN3-204ENST00000357857 FAT2Q9NYQ8 4349 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 227.5 ms