RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HIVEP3Q5T1R4 2406 aa5□□□□□ -1.61
VPS13A-202ENST00000357409 CSPG4Q6UVK1 2322 aa4.99□□□□□ -1.61
VPS13A-202ENST00000357409 LINC00310P59036 64 aa4.99□□□□□ -1.61
VPS13A-202ENST00000357409 Q6JHZ5 121 aa4.99□□□□□ -1.61
VPS13A-202ENST00000357409 LIMD2Q9BT23 127 aa4.99□□□□□ -1.61
VPS13A-202ENST00000357409 A0A096LNJ9 63 aa4.99□□□□□ -1.61
VPS13A-202ENST00000357409 CASC10Q5T4H9 136 aa4.98□□□□□ -1.61
VPS13A-202ENST00000357409 ATP11AUNQ6ZP68 121 aa4.98□□□□□ -1.61
VPS13A-202ENST00000357409 WNK1Q9H4A3 2382 aa4.98□□□□□ -1.61
VPS13A-202ENST00000357409 SPINT4Q6UDR6 99 aa4.98□□□□□ -1.61
VPS13A-202ENST00000357409 FAM218AQ96MZ4 157 aa4.98□□□□□ -1.61
VPS13A-202ENST00000357409 C1orf195Q5TG92 126 aa4.98□□□□□ -1.61
VPS13A-202ENST00000357409 C15orf56Q8N910 161 aa4.98□□□□□ -1.61
VPS13A-202ENST00000357409 PLA2G2DQ9UNK4 145 aa4.98□□□□□ -1.61
VPS13A-202ENST00000357409 ATG2AQ2TAZ0 1938 aa4.97□□□□□ -1.61
VPS13A-202ENST00000357409 ASPMQ8IZT6 3477 aa4.97□□□□□ -1.61
VPS13A-202ENST00000357409 CFAP54Q96N23 3096 aa4.97□□□□□ -1.61
VPS13A-202ENST00000357409 A0A0D9SG42 100 aa4.97□□□□□ -1.61
VPS13A-202ENST00000357409 C11orf72Q8NBR9 251 aa4.97□□□□□ -1.61
VPS13A-202ENST00000357409 YPEL4Q96NS1 127 aa4.97□□□□□ -1.61
VPS13A-202ENST00000357409 OBSCN-AS1Q96MR7 158 aa4.97□□□□□ -1.61
VPS13A-202ENST00000357409 ACYP2P14621 99 aa4.96□□□□□ -1.61
VPS13A-202ENST00000357409 K7EQZ3 153 aa4.96□□□□□ -1.62
VPS13A-202ENST00000357409 AMELXQ99217 191 aa4.96□□□□□ -1.62
VPS13A-202ENST00000357409 TET2Q6N021 2002 aaPredicted RBP4.96□□□□□ -1.62
VPS13A-202ENST00000357409 V9GYY9 64 aa4.96□□□□□ -1.62
VPS13A-202ENST00000357409 TRAV7A0A075B6U4 112 aa4.95□□□□□ -1.62
VPS13A-202ENST00000357409 M0R2T5 61 aa4.95□□□□□ -1.62
VPS13A-202ENST00000357409 ZNF575Q86XF7 245 aa4.95□□□□□ -1.62
VPS13A-202ENST00000357409 KIAA1549LQ6ZVL6 1849 aa4.95□□□□□ -1.62
VPS13A-202ENST00000357409 SSBP3-AS1Q7Z2R9 100 aa4.94□□□□□ -1.62
VPS13A-202ENST00000357409 Q8NAQ8 132 aa4.94□□□□□ -1.62
VPS13A-202ENST00000357409 FAM208BQ5VWN6 2430 aa4.94□□□□□ -1.62
VPS13A-202ENST00000357409 FAM19A4Q96LR4 140 aa4.93□□□□□ -1.62
VPS13A-202ENST00000357409 A0A1B0GUV1 79 aa4.93□□□□□ -1.62
VPS13A-202ENST00000357409 KIF25-AS1Q9Y6Z4 181 aa4.93□□□□□ -1.62
VPS13A-202ENST00000357409 NAV3Q8IVL0 2385 aa4.93□□□□□ -1.62
VPS13A-202ENST00000357409 IGLV5-37A0A075B6J1 123 aa4.93□□□□□ -1.62
VPS13A-202ENST00000357409 CSDC2Q9Y534 153 aaKnown RBP4.92□□□□□ -1.62
VPS13A-202ENST00000357409 HCFC1P51610 2035 aa4.92□□□□□ -1.62
VPS13A-202ENST00000357409 IGHV3OR16-9A0A0B4J2B5 98 aa4.92□□□□□ -1.62
VPS13A-202ENST00000357409 SPTBN5Q9NRC6 3674 aaKnown RBP4.92□□□□□ -1.62
VPS13A-202ENST00000357409 ADAMTS20P59510 1910 aa4.91□□□□□ -1.62
VPS13A-202ENST00000357409 PLXNB1O43157 2135 aa4.91□□□□□ -1.62
VPS13A-202ENST00000357409 C4orf26Q17RF5 130 aa4.91□□□□□ -1.62
VPS13A-202ENST00000357409 CACNA1HO95180 2353 aa4.91□□□□□ -1.62
VPS13A-202ENST00000357409 CSNK1G2-AS1Q8NCQ2 148 aa4.91□□□□□ -1.62
VPS13A-202ENST00000357409 TNP2Q05952 138 aa4.9□□□□□ -1.62
VPS13A-202ENST00000357409 PTPN13Q12923 2485 aa4.9□□□□□ -1.62
VPS13A-202ENST00000357409 EIF4EBP3O60516 100 aaPredicted RBP4.9□□□□□ -1.62
VPS13A-202ENST00000357409 TRBV7-4A0A0J9YYF1 115 aa4.9□□□□□ -1.63
VPS13A-202ENST00000357409 Q8N1X5 172 aa4.89□□□□□ -1.63
VPS13A-202ENST00000357409 C9orf129Q5T035 196 aaKnown RBP4.89□□□□□ -1.63
VPS13A-202ENST00000357409 IGLV1-50A0A075B6I6 118 aa4.89□□□□□ -1.63
VPS13A-202ENST00000357409 Q8NBF4 154 aa4.88□□□□□ -1.63
VPS13A-202ENST00000357409 SPG11Q96JI7 2443 aa4.88□□□□□ -1.63
VPS13A-202ENST00000357409 LRP4O75096 1905 aa4.88□□□□□ -1.63
VPS13A-202ENST00000357409 BCE1O60756 84 aa4.88□□□□□ -1.63
VPS13A-202ENST00000357409 CEP192Q8TEP8 1941 aa4.88□□□□□ -1.63
VPS13A-202ENST00000357409 NDUFC1O43677 76 aa4.87□□□□□ -1.63
VPS13A-202ENST00000357409 CNFNQ9BYD5 112 aa4.87□□□□□ -1.63
VPS13A-202ENST00000357409 SMIM26A0A096LP01 95 aa4.87□□□□□ -1.63
VPS13A-202ENST00000357409 ATP5EP2Q5VTU8 51 aa4.86□□□□□ -1.63
VPS13A-202ENST00000357409 LTBP2Q14767 1821 aa4.86□□□□□ -1.63
VPS13A-202ENST00000357409 A0A087WTM6 91 aa4.86□□□□□ -1.63
VPS13A-202ENST00000357409 SMCPP49901 116 aaPredicted RBP4.85□□□□□ -1.63
VPS13A-202ENST00000357409 PTPRSQ13332 1948 aa4.85□□□□□ -1.63
VPS13A-202ENST00000357409 ELOF1P60002 83 aaKnown RBP4.85□□□□□ -1.63
VPS13A-202ENST00000357409 BDP1A6H8Y1 2624 aa4.84□□□□□ -1.63
VPS13A-202ENST00000357409 PRR26Q8N8Z3 221 aa4.84□□□□□ -1.63
VPS13A-202ENST00000357409 LINC00528Q8N1L1 170 aa4.84□□□□□ -1.64
VPS13A-202ENST00000357409 LINC00304Q8N9R0 145 aa4.84□□□□□ -1.64
VPS13A-202ENST00000357409 PSORS1C2Q9UIG4 136 aa4.83□□□□□ -1.64
VPS13A-202ENST00000357409 MRPL34Q9BQ48 92 aaKnown RBP4.83□□□□□ -1.64
VPS13A-202ENST00000357409 ERC2-IT1O76042 136 aa4.83□□□□□ -1.64
VPS13A-202ENST00000357409 AGRNO00468 2067 aa4.83□□□□□ -1.64
VPS13A-202ENST00000357409 IGLV5-45A0A087WSX0 123 aa4.83□□□□□ -1.64
VPS13A-202ENST00000357409 NOTCH2Q04721 2471 aa4.83□□□□□ -1.64
VPS13A-202ENST00000357409 LINC01600Q96MT4 127 aa4.82□□□□□ -1.64
VPS13A-202ENST00000357409 Q6ZRX8 168 aa4.82□□□□□ -1.64
VPS13A-202ENST00000357409 VPREB1P12018 145 aa4.82□□□□□ -1.64
VPS13A-202ENST00000357409 SONP18583 2426 aaKnown RBP4.82□□□□□ -1.64
VPS13A-202ENST00000357409 A8MUN3 132 aa4.82□□□□□ -1.64
VPS13A-202ENST00000357409 EML5Q05BV3 1969 aa4.81□□□□□ -1.64
VPS13A-202ENST00000357409 IGLV5-39A0A0G2JS06 123 aa4.81□□□□□ -1.64
VPS13A-202ENST00000357409 IGFL1Q6UW32 110 aa4.81□□□□□ -1.64
VPS13A-202ENST00000357409 CRIPTQ9P021 101 aa4.81□□□□□ -1.64
VPS13A-202ENST00000357409 CXCL6P80162 114 aa4.81□□□□□ -1.64
VPS13A-202ENST00000357409 HTTP42858 3142 aa4.81□□□□□ -1.64
VPS13A-202ENST00000357409 Q6ZQT0 140 aa4.8□□□□□ -1.64
VPS13A-202ENST00000357409 IGLV5-48A0A075B6I7 105 aa4.79□□□□□ -1.64
VPS13A-202ENST00000357409 Q8N377 158 aa4.79□□□□□ -1.64
VPS13A-202ENST00000357409 ZNF861PO60384 105 aa4.78□□□□□ -1.64
VPS13A-202ENST00000357409 LOC400499M0QZD8 3231 aa4.78□□□□□ -1.64
VPS13A-202ENST00000357409 C10orf142B7Z368 130 aa4.78□□□□□ -1.64
VPS13A-202ENST00000357409 PTPRBP23467 1997 aa4.78□□□□□ -1.64
VPS13A-202ENST00000357409 TRAV22A0A0B4J277 110 aa4.77□□□□□ -1.65
VPS13A-202ENST00000357409 RBM12B-AS1Q9P1G2 102 aa4.77□□□□□ -1.65
VPS13A-202ENST00000357409 PIEZO2Q9H5I5 2752 aa4.77□□□□□ -1.65
VPS13A-202ENST00000357409 WIPF1O43516 503 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms