RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 FAM218AQ96MZ4 157 aa4.4□□□□□ -1.71
UPF2-201ENST00000356352 LINC00588Q9Y4M8 146 aa4.4□□□□□ -1.71
UPF2-201ENST00000356352 DNAH10OSP0CZ25 163 aa4.39□□□□□ -1.71
UPF2-201ENST00000356352 Q8NAQ8 132 aa4.39□□□□□ -1.71
UPF2-201ENST00000356352 ST20-AS1Q8NBB2 130 aa4.39□□□□□ -1.71
UPF2-201ENST00000356352 MRPL34Q9BQ48 92 aaKnown RBP4.39□□□□□ -1.71
UPF2-201ENST00000356352 J3QL48 77 aa4.38□□□□□ -1.71
UPF2-201ENST00000356352 EXPH5Q8NEV8 1989 aa4.38□□□□□ -1.71
UPF2-201ENST00000356352 KRTAP24-1Q3LI83 254 aa4.38□□□□□ -1.71
UPF2-201ENST00000356352 SPINT4Q6UDR6 99 aa4.38□□□□□ -1.71
UPF2-201ENST00000356352 IGLV6-57P01721 117 aa4.38□□□□□ -1.71
UPF2-201ENST00000356352 CYP4F30PQ9H0H9 118 aa4.38□□□□□ -1.71
UPF2-201ENST00000356352 CHTF8P0CG12 524 aa4.37□□□□□ -1.71
UPF2-201ENST00000356352 OTOGLQ3ZCN5 2332 aa4.37□□□□□ -1.71
UPF2-201ENST00000356352 SMCPP49901 116 aaPredicted RBP4.37□□□□□ -1.71
UPF2-201ENST00000356352 KLK9Q2XQG4 91 aa4.37□□□□□ -1.71
UPF2-201ENST00000356352 NAV3Q8IVL0 2385 aa4.37□□□□□ -1.71
UPF2-201ENST00000356352 PRRC2AP48634 2157 aaKnown RBP4.36□□□□□ -1.71
UPF2-201ENST00000356352 PRO0461Q9UI25 63 aa4.36□□□□□ -1.71
UPF2-201ENST00000356352 COL4A2P08572 1712 aa4.36□□□□□ -1.71
UPF2-201ENST00000356352 VPREB1P12018 145 aa4.36□□□□□ -1.71
UPF2-201ENST00000356352 ACACBO00763 2458 aa4.36□□□□□ -1.71
UPF2-201ENST00000356352 TET2Q6N021 2002 aaPredicted RBP4.36□□□□□ -1.71
UPF2-201ENST00000356352 IGLV1-50A0A075B6I6 118 aa4.35□□□□□ -1.71
UPF2-201ENST00000356352 SORL1Q92673 2214 aa4.35□□□□□ -1.71
UPF2-201ENST00000356352 ARHGAP32A7KAX9 2087 aa4.35□□□□□ -1.71
UPF2-201ENST00000356352 UQCR11O14957 56 aa4.35□□□□□ -1.71
UPF2-201ENST00000356352 TM2D3Q9BRN9 247 aa4.35□□□□□ -1.71
UPF2-201ENST00000356352 KCNQ1DNQ9H478 68 aa4.35□□□□□ -1.71
UPF2-201ENST00000356352 WNK1Q9H4A3 2382 aa4.35□□□□□ -1.71
UPF2-201ENST00000356352 COX6B2Q6YFQ2 88 aa4.35□□□□□ -1.71
UPF2-201ENST00000356352 AGRNO00468 2067 aa4.34□□□□□ -1.71
UPF2-201ENST00000356352 SSBP3-AS1Q7Z2R9 100 aa4.34□□□□□ -1.71
UPF2-201ENST00000356352 COA5Q86WW8 74 aa4.34□□□□□ -1.71
UPF2-201ENST00000356352 LINC01600Q96MT4 127 aa4.34□□□□□ -1.71
UPF2-201ENST00000356352 LINC00304Q8N9R0 145 aa4.33□□□□□ -1.72
UPF2-201ENST00000356352 CRIPTQ9P021 101 aa4.33□□□□□ -1.72
UPF2-201ENST00000356352 C4orf26Q17RF5 130 aa4.33□□□□□ -1.72
UPF2-201ENST00000356352 IGLV8-61A0A075B6I0 122 aa4.32□□□□□ -1.72
UPF2-201ENST00000356352 K7EQZ3 153 aa4.32□□□□□ -1.72
UPF2-201ENST00000356352 LITAFQ99732 161 aa4.32□□□□□ -1.72
UPF2-201ENST00000356352 C8orf17Q9NRJ1 99 aa4.32□□□□□ -1.72
UPF2-201ENST00000356352 PLXNB1O43157 2135 aa4.32□□□□□ -1.72
UPF2-201ENST00000356352 CUL9Q8IWT3 2517 aa4.32□□□□□ -1.72
UPF2-201ENST00000356352 PLA2G2DQ9UNK4 145 aa4.32□□□□□ -1.72
UPF2-201ENST00000356352 A0A1B0GVX0 72 aa4.31□□□□□ -1.72
UPF2-201ENST00000356352 NAV2Q8IVL1 2488 aa4.31□□□□□ -1.72
UPF2-201ENST00000356352 ZNF861PO60384 105 aa4.31□□□□□ -1.72
UPF2-201ENST00000356352 PRR15Q8IV56 129 aa4.31□□□□□ -1.72
UPF2-201ENST00000356352 LINC00528Q8N1L1 170 aa4.31□□□□□ -1.72
UPF2-201ENST00000356352 CSPG4Q6UVK1 2322 aa4.31□□□□□ -1.72
UPF2-201ENST00000356352 FAM168BA1KXE4 195 aa4.3□□□□□ -1.72
UPF2-201ENST00000356352 IGFL1Q6UW32 110 aa4.3□□□□□ -1.72
UPF2-201ENST00000356352 TLX1NBP0CAT3 122 aa4.3□□□□□ -1.72
UPF2-201ENST00000356352 MIR22HGQ0VDD5 57 aa4.29□□□□□ -1.72
UPF2-201ENST00000356352 DSCR10P59022 87 aa4.29□□□□□ -1.72
UPF2-201ENST00000356352 RBM12B-AS1Q9P1G2 102 aa4.29□□□□□ -1.72
UPF2-201ENST00000356352 APLNQ9ULZ1 77 aa4.29□□□□□ -1.72
UPF2-201ENST00000356352 LINC00336Q6ZUF6 198 aa4.29□□□□□ -1.72
UPF2-201ENST00000356352 SPG11Q96JI7 2443 aa4.29□□□□□ -1.72
UPF2-201ENST00000356352 PTPRBP23467 1997 aa4.28□□□□□ -1.72
UPF2-201ENST00000356352 HIVEP3Q5T1R4 2406 aa4.28□□□□□ -1.72
UPF2-201ENST00000356352 CSNK1G2-AS1Q8NCQ2 148 aa4.28□□□□□ -1.72
UPF2-201ENST00000356352 PRR34Q9NV39 138 aa4.28□□□□□ -1.72
UPF2-201ENST00000356352 ATRXP46100 2492 aa4.28□□□□□ -1.72
UPF2-201ENST00000356352 COL27A1Q8IZC6 1860 aaPredicted RBP4.28□□□□□ -1.72
UPF2-201ENST00000356352 C19orf73Q9NVV2 129 aa4.28□□□□□ -1.72
UPF2-201ENST00000356352 PTPN13Q12923 2485 aa4.27□□□□□ -1.73
UPF2-201ENST00000356352 C15orf56Q8N910 161 aa4.27□□□□□ -1.73
UPF2-201ENST00000356352 OBSCN-AS1Q96MR7 158 aa4.27□□□□□ -1.73
UPF2-201ENST00000356352 A8MUN3 132 aa4.26□□□□□ -1.73
UPF2-201ENST00000356352 NOTCH2Q04721 2471 aa4.26□□□□□ -1.73
UPF2-201ENST00000356352 A0A087WTM6 91 aa4.26□□□□□ -1.73
UPF2-201ENST00000356352 KLKP1Q107X0 134 aa4.26□□□□□ -1.73
UPF2-201ENST00000356352 IGLV5-37A0A075B6J1 123 aa4.26□□□□□ -1.73
UPF2-201ENST00000356352 K7EIL1 84 aa4.25□□□□□ -1.73
UPF2-201ENST00000356352 IGLV7-43P04211 117 aa4.25□□□□□ -1.73
UPF2-201ENST00000356352 SONP18583 2426 aaKnown RBP4.25□□□□□ -1.73
UPF2-201ENST00000356352 LINC00612Q8N6U2 182 aa4.25□□□□□ -1.73
UPF2-201ENST00000356352 C9orf163Q8N9P6 203 aa4.25□□□□□ -1.73
UPF2-201ENST00000356352 C9orf129Q5T035 196 aaKnown RBP4.24□□□□□ -1.73
UPF2-201ENST00000356352 KRTAP10-11P60412 298 aa4.24□□□□□ -1.73
UPF2-201ENST00000356352 C9orf92A6NGG3 77 aa4.24□□□□□ -1.73
UPF2-201ENST00000356352 Q8N377 158 aa4.24□□□□□ -1.73
UPF2-201ENST00000356352 CDC42SE1Q9NRR8 79 aa4.24□□□□□ -1.73
UPF2-201ENST00000356352 SPANXA2-OT1Q8N9U9 137 aa4.24□□□□□ -1.73
UPF2-201ENST00000356352 CNBPP62633 177 aaKnown RBP4.23□□□□□ -1.73
UPF2-201ENST00000356352 BDP1A6H8Y1 2624 aa4.23□□□□□ -1.73
UPF2-201ENST00000356352 SPRR4Q96PI1 79 aa4.22□□□□□ -1.73
UPF2-201ENST00000356352 TTC28Q96AY4 2481 aa4.21□□□□□ -1.73
UPF2-201ENST00000356352 FAM104AQ969W3 186 aa4.21□□□□□ -1.74
UPF2-201ENST00000356352 CACNA1AO00555 2505 aa4.21□□□□□ -1.74
UPF2-201ENST00000356352 ZNF575Q86XF7 245 aa4.2□□□□□ -1.74
UPF2-201ENST00000356352 CD164Q04900 197 aa4.2□□□□□ -1.74
UPF2-201ENST00000356352 KTN1-AS1Q86SY8 53 aa4.19□□□□□ -1.74
UPF2-201ENST00000356352 PSORS1C2Q9UIG4 136 aa4.19□□□□□ -1.74
UPF2-201ENST00000356352 LCA10Q71F78 164 aa4.19□□□□□ -1.74
UPF2-201ENST00000356352 ABCA2Q9BZC7 2435 aa4.18□□□□□ -1.74
UPF2-201ENST00000356352 H7BZZ5 65 aa4.17□□□□□ -1.74
UPF2-201ENST00000356352 A0A096LNT2 108 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms