RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 AMMECR1LQ6DCA0 310 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 CLPSL2Q6UWE3 100 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 LINC01561Q8N1V8 128 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 TM2D3Q9BRN9 247 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 SPANXA1Q9NS26 97 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 TOMM7Q9P0U1 55 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 FLGP20930 4061 aaPredicted RBP1.51□□□□□ -2.17
VPS54-202ENST00000354504 TRBV6-8A0A0A6YYG3 113 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 A0A0B4J2C4 111 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 APOMO95445 188 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 OR11H2Q8NH07 326 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 HIST1H4GQ99525 98 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 CHCHD5Q9BSY4 110 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 C11orf68Q9H3H3 251 aaKnown RBP1.51□□□□□ -2.17
VPS54-202ENST00000354504 KRTAP4-16G5E9R7 235 aaPredicted RBP1.51□□□□□ -2.17
VPS54-202ENST00000354504 J3QQQ9 107 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 PPP1R17O96001 155 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 COTL1Q14019 142 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 DAZ4Q86SG3 579 aaKnown RBP1.51□□□□□ -2.17
VPS54-202ENST00000354504 MTURNQ8N3F0 131 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 C15orf56Q8N910 161 aa1.51□□□□□ -2.17
VPS54-202ENST00000354504 GEMIN7Q9H840 131 aaKnown RBP1.51□□□□□ -2.17
VPS54-202ENST00000354504 NHP2Q9NX24 153 aaKnown RBP1.51□□□□□ -2.17
VPS54-202ENST00000354504 H3BUT2 72 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 CDK2AP2O75956 126 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 TCL1BO95988 128 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 KRTAP10-6P60371 365 aaPredicted RBP1.5□□□□□ -2.17
VPS54-202ENST00000354504 LINC00337Q8N6G1 96 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 BIRC6Q9NR09 4857 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 IGLV10-54A0A075B6I4 117 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 IGKV2D-30A0A075B6S6 120 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 TRAV8-4A0A0B4J246 113 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 LINC01549A6NIU2 74 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 ZNF815PA8K554 130 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 K7EIL1 84 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 UBE2L6O14933 153 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 RPL36AP83881 106 aaKnown RBP1.5□□□□□ -2.17
VPS54-202ENST00000354504 MIAQ16674 131 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 Q6ZRN7 208 aaPredicted RBP1.5□□□□□ -2.17
VPS54-202ENST00000354504 MUSTN1Q8IVN3 82 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 DAND5Q8N907 189 aa1.5□□□□□ -2.17
VPS54-202ENST00000354504 MUC5BQ9HC84 5762 aaPredicted RBP1.49□□□□□ -2.17
VPS54-202ENST00000354504 LINC00959A0A1B0GUT2 108 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 SMIM9A6NGZ8 99 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 H3BNG1 76 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 SCGB1C2P0DMR2 95 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 Q1RN00 199 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 C12orf54Q6X4T0 127 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 TRBV30A0A0K0K1B3 111 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 LGALS3P17931 250 aaKnown RBP1.49□□□□□ -2.17
VPS54-202ENST00000354504 WFDC2Q14508 124 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 RETNQ9HD89 108 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 GVQW2A0A096LPI5 108 aaPredicted RBP1.49□□□□□ -2.17
VPS54-202ENST00000354504 LYRM9A8MSI8 78 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 SPINK8P0C7L1 97 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 C5orf38Q86SI9 138 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 KRTAP11-1Q8IUC1 163 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 LINC00308Q8TCZ7 52 aa1.49□□□□□ -2.17
VPS54-202ENST00000354504 A0A0J9YWU9 116 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 XCL1P47992 114 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 PSMB2P49721 201 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 HERVK_113P61574 105 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 DAD1P61803 113 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 OCIAD2Q56VL3 154 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 MEIG1Q5JSS6 88 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 CASC10Q5T4H9 136 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 LYPD5Q6UWN5 251 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 C2orf82Q6UX34 121 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 SMCR5Q8TEV8 140 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 PFN2P35080 140 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 RPL13AP40429 203 aaKnown RBP1.48□□□□□ -2.17
VPS54-202ENST00000354504 C9orf66Q5T8R8 295 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 Q6ZVQ6 151 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 LINC00526Q96FQ7 95 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 A0A1B0GV72 72 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 A6NDN8 102 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 H3BMG7 143 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 ANGP03950 147 aaKnown RBP1.48□□□□□ -2.17
VPS54-202ENST00000354504 ESRGQ1W209 222 aa1.48□□□□□ -2.17
VPS54-202ENST00000354504 HERC2O95714 4834 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 TEX48A0A1B0GUV7 120 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 LST1O00453 97 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 IGLV6-57P01721 117 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 SMIM13P0DJ93 91 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 MIFP14174 115 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 C14orf177Q52M58 125 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 C6orf226Q5I0X4 101 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 LCE1FQ5T754 118 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 Q8IZM0 81 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 ATP6V0E2Q8NHE4 81 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 UPK3BQ9BT76 320 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 SPCS1Q9Y6A9 102 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 FABP2P12104 132 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 RPL28P46779 137 aaKnown RBP1.47□□□□□ -2.17
VPS54-202ENST00000354504 CCL18P55774 89 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 SH2D6Q7Z4S9 175 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 C6orf223Q8N319 242 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 OR13C6PQ8NH95 151 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 VPS25Q9BRG1 176 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 TMEM243Q9BU79 118 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms