RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TEX15Q9BXT5 2789 aa4.6□□□□□ -1.67
VPS39-202ENST00000348544 NDUFC1O43677 76 aa4.59□□□□□ -1.67
VPS39-202ENST00000348544 DEFB130BP0DP73 79 aa4.59□□□□□ -1.67
VPS39-202ENST00000348544 DEFB130AP0DP74 79 aa4.59□□□□□ -1.67
VPS39-202ENST00000348544 DSCR9P59020 149 aa4.59□□□□□ -1.67
VPS39-202ENST00000348544 CD164L2Q6UWJ8 174 aa4.59□□□□□ -1.67
VPS39-202ENST00000348544 LINC01006Q8NI28 216 aa4.59□□□□□ -1.67
VPS39-202ENST00000348544 CHCHD10Q8WYQ3 142 aaPredicted RBP4.59□□□□□ -1.67
VPS39-202ENST00000348544 TMEM254Q8TBM7 123 aa4.59□□□□□ -1.67
VPS39-202ENST00000348544 SPTBN4Q9H254 2564 aa4.59□□□□□ -1.68
VPS39-202ENST00000348544 FN1P02751 2386 aaKnown RBP4.59□□□□□ -1.68
VPS39-202ENST00000348544 CCL24O00175 119 aa4.59□□□□□ -1.68
VPS39-202ENST00000348544 PDE6GP18545 87 aa4.59□□□□□ -1.68
VPS39-202ENST00000348544 UNQ6190/PRO20217Q6UXQ8 127 aa4.59□□□□□ -1.68
VPS39-202ENST00000348544 Q8N9L7 120 aa4.59□□□□□ -1.68
VPS39-202ENST00000348544 NF1P21359 2839 aa4.58□□□□□ -1.68
VPS39-202ENST00000348544 IGHV4-31P0DP07 118 aa4.58□□□□□ -1.68
VPS39-202ENST00000348544 ATP5EP56381 51 aaPredicted RBP4.58□□□□□ -1.68
VPS39-202ENST00000348544 BRK1Q8WUW1 75 aa4.58□□□□□ -1.68
VPS39-202ENST00000348544 BPY2O14599 106 aa4.58□□□□□ -1.68
VPS39-202ENST00000348544 LRRK2Q5S007 2527 aa4.58□□□□□ -1.68
VPS39-202ENST00000348544 PTPN13Q12923 2485 aa4.57□□□□□ -1.68
VPS39-202ENST00000348544 CENPEQ02224 2701 aa4.57□□□□□ -1.68
VPS39-202ENST00000348544 APCP25054 2843 aa4.57□□□□□ -1.68
VPS39-202ENST00000348544 SETD2Q9BYW2 2564 aaPredicted RBP4.57□□□□□ -1.68
VPS39-202ENST00000348544 A0A0U1RQV1 116 aa4.57□□□□□ -1.68
VPS39-202ENST00000348544 BBC3Q96PG8 261 aaPredicted RBP4.57□□□□□ -1.68
VPS39-202ENST00000348544 NAV2Q8IVL1 2488 aa4.57□□□□□ -1.68
VPS39-202ENST00000348544 LCE2AQ5TA79 106 aaPredicted RBP4.57□□□□□ -1.68
VPS39-202ENST00000348544 LINC00612Q8N6U2 182 aa4.57□□□□□ -1.68
VPS39-202ENST00000348544 MPLKIPQ8TAP9 179 aa4.57□□□□□ -1.68
VPS39-202ENST00000348544 PIEZO1Q92508 2521 aa4.57□□□□□ -1.68
VPS39-202ENST00000348544 ZFYVE26Q68DK2 2539 aa4.56□□□□□ -1.68
VPS39-202ENST00000348544 NBEAL2Q6ZNJ1 2754 aa4.56□□□□□ -1.68
VPS39-202ENST00000348544 ERC2-IT1O76042 136 aa4.56□□□□□ -1.68
VPS39-202ENST00000348544 PRB1P04280 392 aa4.56□□□□□ -1.68
VPS39-202ENST00000348544 IGKV4-1P06312 121 aa4.56□□□□□ -1.68
VPS39-202ENST00000348544 REG3AQ06141 175 aa4.56□□□□□ -1.68
VPS39-202ENST00000348544 SEC61GP60059 68 aa4.56□□□□□ -1.68
VPS39-202ENST00000348544 OCR1Q9BZK8 76 aa4.56□□□□□ -1.68
VPS39-202ENST00000348544 GCN1Q92616 2671 aaKnown RBP4.55□□□□□ -1.68
VPS39-202ENST00000348544 ANGP03950 147 aaKnown RBP4.55□□□□□ -1.68
VPS39-202ENST00000348544 A0A0J9YWU9 116 aa4.55□□□□□ -1.68
VPS39-202ENST00000348544 CYSRT1A8MQ03 144 aa4.55□□□□□ -1.68
VPS39-202ENST00000348544 PRYO14603 147 aa4.55□□□□□ -1.68
VPS39-202ENST00000348544 IGHV4-30-4P0DP06 118 aa4.55□□□□□ -1.68
VPS39-202ENST00000348544 SPAG11BQ08648 103 aa4.55□□□□□ -1.68
VPS39-202ENST00000348544 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.55□□□□□ -1.68
VPS39-202ENST00000348544 Q6ZTC4 211 aa4.55□□□□□ -1.68
VPS39-202ENST00000348544 DIRC1Q969H9 104 aa4.55□□□□□ -1.68
VPS39-202ENST00000348544 SONP18583 2426 aaKnown RBP4.55□□□□□ -1.68
VPS39-202ENST00000348544 ZNF469Q96JG9 3925 aaPredicted RBP4.54□□□□□ -1.68
VPS39-202ENST00000348544 IGLV1-51P01701 117 aa4.54□□□□□ -1.68
VPS39-202ENST00000348544 XAGE1AQ9HD64 81 aa4.54□□□□□ -1.68
VPS39-202ENST00000348544 H3BQ85 93 aa4.54□□□□□ -1.68
VPS39-202ENST00000348544 ZNF73O43830 326 aaPredicted RBP4.54□□□□□ -1.68
VPS39-202ENST00000348544 COX7BP24311 80 aa4.54□□□□□ -1.68
VPS39-202ENST00000348544 ELOF1P60002 83 aaKnown RBP4.54□□□□□ -1.68
VPS39-202ENST00000348544 MDFIQ99750 246 aa4.54□□□□□ -1.68
VPS39-202ENST00000348544 PRO0255Q9UI72 69 aa4.54□□□□□ -1.68
VPS39-202ENST00000348544 CMC4P56277 68 aaPredicted RBP4.53□□□□□ -1.68
VPS39-202ENST00000348544 C1orf195Q5TG92 126 aa4.53□□□□□ -1.68
VPS39-202ENST00000348544 HIGD2AQ9BW72 106 aa4.53□□□□□ -1.68
VPS39-202ENST00000348544 PKD1L2Q7Z442 2459 aa4.53□□□□□ -1.68
VPS39-202ENST00000348544 FUSP35637 526 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS39-202ENST00000348544 ESRGQ1W209 222 aa4.53□□□□□ -1.68
VPS39-202ENST00000348544 ESM1Q9NQ30 184 aa4.53□□□□□ -1.68
VPS39-202ENST00000348544 MYO18BQ8IUG5 2567 aa4.52□□□□□ -1.69
VPS39-202ENST00000348544 C6orf48Q9UBA6 75 aa4.52□□□□□ -1.69
VPS39-202ENST00000348544 X6R8D5 127 aa4.52□□□□□ -1.69
VPS39-202ENST00000348544 ABCA12Q86UK0 2595 aa4.52□□□□□ -1.69
VPS39-202ENST00000348544 DNAJC9-AS1A6NH13 148 aa4.52□□□□□ -1.69
VPS39-202ENST00000348544 DAD1P61803 113 aa4.51□□□□□ -1.69
VPS39-202ENST00000348544 CELA1Q9UNI1 258 aa4.51□□□□□ -1.69
VPS39-202ENST00000348544 ACACBO00763 2458 aa4.51□□□□□ -1.69
VPS39-202ENST00000348544 KLK12Q9UKR0 248 aa4.51□□□□□ -1.69
VPS39-202ENST00000348544 GVQW2A0A096LPI5 108 aaPredicted RBP4.5□□□□□ -1.69
VPS39-202ENST00000348544 C3orf84H3BNL1 204 aa4.5□□□□□ -1.69
VPS39-202ENST00000348544 KRTAP10-9P60411 292 aa4.5□□□□□ -1.69
VPS39-202ENST00000348544 DEFB4AO15263 64 aa4.5□□□□□ -1.69
VPS39-202ENST00000348544 VPREB1P12018 145 aa4.5□□□□□ -1.69
VPS39-202ENST00000348544 V9GYY9 64 aa4.5□□□□□ -1.69
VPS39-202ENST00000348544 FAM208BQ5VWN6 2430 aa4.5□□□□□ -1.69
VPS39-202ENST00000348544 LORP23490 312 aaPredicted RBP4.49□□□□□ -1.69
VPS39-202ENST00000348544 IGSF10Q6WRI0 2623 aa4.49□□□□□ -1.69
VPS39-202ENST00000348544 hDV103S1A0JD37 113 aa4.49□□□□□ -1.69
VPS39-202ENST00000348544 LRCOL1A6NCL2 159 aa4.49□□□□□ -1.69
VPS39-202ENST00000348544 SMIM29Q86T20 159 aa4.49□□□□□ -1.69
VPS39-202ENST00000348544 FAM30AQ9NZY2 134 aa4.49□□□□□ -1.69
VPS39-202ENST00000348544 PRR34Q9NV39 138 aa4.48□□□□□ -1.69
VPS39-202ENST00000348544 LCE6AA0A183 80 aa4.48□□□□□ -1.69
VPS39-202ENST00000348544 Q6ZRP5 223 aa4.48□□□□□ -1.69
VPS39-202ENST00000348544 ITPR3Q14573 2671 aa4.48□□□□□ -1.69
VPS39-202ENST00000348544 CACNA1AO00555 2505 aa4.47□□□□□ -1.69
VPS39-202ENST00000348544 CCDC168Q8NDH2 2452 aa4.47□□□□□ -1.69
VPS39-202ENST00000348544 HIGD2BQ4VC39 106 aa4.47□□□□□ -1.69
VPS39-202ENST00000348544 M0R378 163 aa4.46□□□□□ -1.7
VPS39-202ENST00000348544 KRTAP1-3Q8IUG1 177 aa4.46□□□□□ -1.7
VPS39-202ENST00000348544 C1orf64Q8NEQ6 169 aa4.46□□□□□ -1.7
VPS39-202ENST00000348544 LYRM9A8MSI8 78 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms