RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ZNF561-AS1K7EIQ3 104 aa10.95□□□□□ -0.66
HMGA1-202ENST00000347617 LOC100131303A0A0U1RQF7 123 aa10.94□□□□□ -0.66
HMGA1-202ENST00000347617 WFDC10AQ9H1F0 79 aa10.93□□□□□ -0.66
HMGA1-202ENST00000347617 RBM3P98179 157 aaKnown RBP10.93□□□□□ -0.66
HMGA1-202ENST00000347617 FAM19A1Q7Z5A9 133 aa10.93□□□□□ -0.66
HMGA1-202ENST00000347617 RPL35AP18077 110 aaKnown RBP10.92□□□□□ -0.66
HMGA1-202ENST00000347617 KRTAP24-1Q3LI83 254 aa10.92□□□□□ -0.66
HMGA1-202ENST00000347617 Q6ZQT0 140 aa10.92□□□□□ -0.66
HMGA1-202ENST00000347617 C20orf197Q8N268 126 aa10.92□□□□□ -0.66
HMGA1-202ENST00000347617 C6orf223Q8N319 242 aa10.92□□□□□ -0.66
HMGA1-202ENST00000347617 IGHV4-28A0A0C4DH34 117 aa10.91□□□□□ -0.66
HMGA1-202ENST00000347617 KLKP1Q107X0 134 aa10.91□□□□□ -0.66
HMGA1-202ENST00000347617 CXCL6P80162 114 aa10.9□□□□□ -0.66
HMGA1-202ENST00000347617 LINC00575Q6W349 94 aa10.9□□□□□ -0.66
HMGA1-202ENST00000347617 TEP1Q99973 2627 aaKnown RBP10.9□□□□□ -0.66
HMGA1-202ENST00000347617 NDUFC1O43677 76 aa10.9□□□□□ -0.67
HMGA1-202ENST00000347617 ATP5EP56381 51 aaPredicted RBP10.9□□□□□ -0.67
HMGA1-202ENST00000347617 C4orf26Q17RF5 130 aa10.9□□□□□ -0.67
HMGA1-202ENST00000347617 SPATA3Q8NHX4 192 aa10.9□□□□□ -0.67
HMGA1-202ENST00000347617 NIPBLQ6KC79 2804 aaeCLIP10.87□□□□□ -0.676e-7■■□□□ 12.3
HMGA1-202ENST00000347617 JMJD1CQ15652 2540 aa10.87□□□□□ -0.67
HMGA1-202ENST00000347617 H7BZZ5 65 aa10.87□□□□□ -0.67
HMGA1-202ENST00000347617 HRCT1Q6UXD1 115 aa10.87□□□□□ -0.67
HMGA1-202ENST00000347617 C11orf68Q9H3H3 251 aaKnown RBP10.87□□□□□ -0.67
HMGA1-202ENST00000347617 ATRQ13535 2644 aa10.86□□□□□ -0.67
HMGA1-202ENST00000347617 CD164L2Q6UWJ8 174 aa10.86□□□□□ -0.67
HMGA1-202ENST00000347617 APOC4P55056 127 aa10.85□□□□□ -0.67
HMGA1-202ENST00000347617 KIAA0087Q14695 138 aa10.85□□□□□ -0.67
HMGA1-202ENST00000347617 C6orf99Q4VX62 202 aa10.85□□□□□ -0.67
HMGA1-202ENST00000347617 TENM1Q9UKZ4 2725 aa10.85□□□□□ -0.67
HMGA1-202ENST00000347617 LINC01547P58512 204 aaPredicted RBP10.85□□□□□ -0.67
HMGA1-202ENST00000347617 LINC00612Q8N6U2 182 aa10.85□□□□□ -0.67
HMGA1-202ENST00000347617 SMIM26A0A096LP01 95 aa10.83□□□□□ -0.68
HMGA1-202ENST00000347617 Q6ZVQ6 151 aa10.83□□□□□ -0.68
HMGA1-202ENST00000347617 LAMTOR3Q9UHA4 124 aa10.83□□□□□ -0.68
HMGA1-202ENST00000347617 GYPEP15421 78 aa10.8□□□□□ -0.68
HMGA1-202ENST00000347617 PRO0628Q9UI54 55 aa10.8□□□□□ -0.68
HMGA1-202ENST00000347617 X6R8D5 127 aa10.8□□□□□ -0.68
HMGA1-202ENST00000347617 VWFP04275 2813 aa10.8□□□□□ -0.68
HMGA1-202ENST00000347617 NOTCH3Q9UM47 2321 aa10.8□□□□□ -0.68
HMGA1-202ENST00000347617 ERC2-IT1O76042 136 aa10.8□□□□□ -0.68
HMGA1-202ENST00000347617 PRR3P79522 188 aaKnown RBP10.8□□□□□ -0.68
HMGA1-202ENST00000347617 EGFEM1PQ0D2K5 195 aa10.8□□□□□ -0.68
HMGA1-202ENST00000347617 HAMPP81172 84 aa10.79□□□□□ -0.68
HMGA1-202ENST00000347617 IGLV6-57P01721 117 aa10.78□□□□□ -0.68
HMGA1-202ENST00000347617 PRO0255Q9UI72 69 aa10.78□□□□□ -0.68
HMGA1-202ENST00000347617 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.77□□□□□ -0.68
HMGA1-202ENST00000347617 CHCHD10Q8WYQ3 142 aaPredicted RBP10.77□□□□□ -0.68
HMGA1-202ENST00000347617 LYRM9A8MSI8 78 aa10.77□□□□□ -0.69
HMGA1-202ENST00000347617 TRBV7-6A0A0J9YX20 115 aa10.76□□□□□ -0.69
HMGA1-202ENST00000347617 A0A0J9YWU9 116 aa10.75□□□□□ -0.69
HMGA1-202ENST00000347617 IGHV4-30-4P0DP06 118 aa10.75□□□□□ -0.69
HMGA1-202ENST00000347617 MIFP14174 115 aa10.75□□□□□ -0.69
HMGA1-202ENST00000347617 TRBV7-4A0A0J9YYF1 115 aa10.74□□□□□ -0.69
HMGA1-202ENST00000347617 GVQW2A0A096LPI5 108 aaPredicted RBP10.73□□□□□ -0.69
HMGA1-202ENST00000347617 TRAV10A0A0B4J240 114 aa10.73□□□□□ -0.69
HMGA1-202ENST00000347617 F8WEM9 126 aa10.73□□□□□ -0.69
HMGA1-202ENST00000347617 DEFB130BP0DP73 79 aa10.72□□□□□ -0.69
HMGA1-202ENST00000347617 DEFB130AP0DP74 79 aa10.72□□□□□ -0.69
HMGA1-202ENST00000347617 OXLD1Q5BKU9 147 aa10.72□□□□□ -0.69
HMGA1-202ENST00000347617 Q6ZQY7 126 aa10.72□□□□□ -0.69
HMGA1-202ENST00000347617 LINC00269Q8N2A0 174 aa10.72□□□□□ -0.69
HMGA1-202ENST00000347617 DIRC1Q969H9 104 aa10.72□□□□□ -0.69
HMGA1-202ENST00000347617 REG3AQ06141 175 aa10.72□□□□□ -0.69
HMGA1-202ENST00000347617 Q8N3U1 123 aa10.72□□□□□ -0.69
HMGA1-202ENST00000347617 DEFB135Q30KP9 77 aa10.71□□□□□ -0.69
HMGA1-202ENST00000347617 CLPSL2Q6UWE3 100 aa10.71□□□□□ -0.69
HMGA1-202ENST00000347617 KRTAP10-11P60412 298 aa10.7□□□□□ -0.7
HMGA1-202ENST00000347617 RMI2Q96E14 147 aa10.7□□□□□ -0.7
HMGA1-202ENST00000347617 SPAG11BQ08648 103 aa10.7□□□□□ -0.7
HMGA1-202ENST00000347617 Q8NDZ9 215 aa10.7□□□□□ -0.7
HMGA1-202ENST00000347617 FBN1P35555 2871 aaKnown RBP10.69□□□□□ -0.7
HMGA1-202ENST00000347617 ANGP03950 147 aaKnown RBP10.69□□□□□ -0.7
HMGA1-202ENST00000347617 Q8NAQ8 132 aa10.69□□□□□ -0.7
HMGA1-202ENST00000347617 COX7BP24311 80 aa10.68□□□□□ -0.7
HMGA1-202ENST00000347617 NREPQ16612 68 aa10.68□□□□□ -0.7
HMGA1-202ENST00000347617 C9orf116Q5BN46 136 aaPredicted RBP10.68□□□□□ -0.7
HMGA1-202ENST00000347617 SNURFQ9Y675 71 aa10.68□□□□□ -0.7
HMGA1-202ENST00000347617 M0R2N4 97 aa10.67□□□□□ -0.7
HMGA1-202ENST00000347617 TRRAPQ9Y4A5 3859 aa10.66□□□□□ -0.7
HMGA1-202ENST00000347617 SPART-AS1P0CW21 52 aa10.65□□□□□ -0.7
HMGA1-202ENST00000347617 ELOF1P60002 83 aaKnown RBP10.65□□□□□ -0.7
HMGA1-202ENST00000347617 FP248Q71RG6 208 aaPredicted RBP10.65□□□□□ -0.7
HMGA1-202ENST00000347617 UNQ6190/PRO20217Q6UXQ8 127 aa10.65□□□□□ -0.71
HMGA1-202ENST00000347617 LINC00336Q6ZUF6 198 aa10.65□□□□□ -0.71
HMGA1-202ENST00000347617 BPY2O14599 106 aa10.64□□□□□ -0.71
HMGA1-202ENST00000347617 TMEM254Q8TBM7 123 aa10.64□□□□□ -0.71
HMGA1-202ENST00000347617 TM2D3Q9BRN9 247 aa10.64□□□□□ -0.71
HMGA1-202ENST00000347617 ZNF73O43830 326 aaPredicted RBP10.63□□□□□ -0.71
HMGA1-202ENST00000347617 IGLV10-54A0A075B6I4 117 aa10.62□□□□□ -0.71
HMGA1-202ENST00000347617 DAD1P61803 113 aa10.62□□□□□ -0.71
HMGA1-202ENST00000347617 STAB1Q9NY15 2570 aa10.62□□□□□ -0.71
HMGA1-202ENST00000347617 C10orf25Q5T742 122 aa10.61□□□□□ -0.71
HMGA1-202ENST00000347617 A0A1B0GW54 56 aa10.6□□□□□ -0.71
HMGA1-202ENST00000347617 LELP1Q5T871 98 aa10.6□□□□□ -0.71
HMGA1-202ENST00000347617 PRR34Q9NV39 138 aa10.59□□□□□ -0.71
HMGA1-202ENST00000347617 A0A096LPF7 62 aa10.58□□□□□ -0.72
HMGA1-202ENST00000347617 PRYO14603 147 aa10.58□□□□□ -0.72
HMGA1-202ENST00000347617 CELA1Q9UNI1 258 aa10.58□□□□□ -0.72
HMGA1-202ENST00000347617 A0A0U1RQV1 116 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms