RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 C16orf90A8MZG2 172 aa12.11□□□□□ -0.47
CHMP4A-201ENST00000347519 Q8NDZ9 215 aa12.11□□□□□ -0.47
CHMP4A-201ENST00000347519 KRTAP17-1Q9BYP8 105 aa12.11□□□□□ -0.47
CHMP4A-201ENST00000347519 TSTD3H0UI37 97 aa12.1□□□□□ -0.47
CHMP4A-201ENST00000347519 LINC00308Q8TCZ7 52 aa12.1□□□□□ -0.47
CHMP4A-201ENST00000347519 HNRNPA3P51991 378 aaKnown RBP12.09□□□□□ -0.47
CHMP4A-201ENST00000347519 FAM30AQ9NZY2 134 aa12.09□□□□□ -0.47
CHMP4A-201ENST00000347519 FAM168BA1KXE4 195 aa12.08□□□□□ -0.48
CHMP4A-201ENST00000347519 MUSTN1Q8IVN3 82 aa12.08□□□□□ -0.48
CHMP4A-201ENST00000347519 SRSF9Q13242 221 aaKnown RBP eCLIP12.07□□□□□ -0.48
CHMP4A-201ENST00000347519 KRTAP7-1Q8IUC3 87 aa12.07□□□□□ -0.48
CHMP4A-201ENST00000347519 SPACA4Q8TDM5 124 aa12.06□□□□□ -0.48
CHMP4A-201ENST00000347519 HIST1H4GQ99525 98 aa12.06□□□□□ -0.48
CHMP4A-201ENST00000347519 APOBP04114 4563 aaKnown RBP12.06□□□□□ -0.48
CHMP4A-201ENST00000347519 LOC107984156A0A0G2JMH3 177 aa12.05□□□□□ -0.48
CHMP4A-201ENST00000347519 A0A1W2PNN7 141 aa12.05□□□□□ -0.48
CHMP4A-201ENST00000347519 SERTAD4-AS1Q5TG53 156 aa12.05□□□□□ -0.48
CHMP4A-201ENST00000347519 ARL17AQ8IVW1 177 aa12.05□□□□□ -0.48
CHMP4A-201ENST00000347519 PKIGQ9Y2B9 76 aa12.05□□□□□ -0.48
CHMP4A-201ENST00000347519 Q6ZVH6 145 aa12.05□□□□□ -0.48
CHMP4A-201ENST00000347519 IFITM1P13164 125 aa12.03□□□□□ -0.48
CHMP4A-201ENST00000347519 PRR3P79522 188 aaKnown RBP12.03□□□□□ -0.48
CHMP4A-201ENST00000347519 Q6ZSA8 131 aa12.03□□□□□ -0.48
CHMP4A-201ENST00000347519 VPREB1P12018 145 aa12.02□□□□□ -0.49
CHMP4A-201ENST00000347519 DDTP30046 118 aa12.02□□□□□ -0.49
CHMP4A-201ENST00000347519 HSD52Q0P140 79 aa12.02□□□□□ -0.49
CHMP4A-201ENST00000347519 HAMPP81172 84 aa12.01□□□□□ -0.49
CHMP4A-201ENST00000347519 TAL2Q16559 108 aa12.01□□□□□ -0.49
CHMP4A-201ENST00000347519 FAM19A5Q7Z5A7 132 aaPredicted RBP12.01□□□□□ -0.49
CHMP4A-201ENST00000347519 A0A087WYN8 130 aa12□□□□□ -0.49
CHMP4A-201ENST00000347519 CEND1Q8N111 149 aa12□□□□□ -0.49
CHMP4A-201ENST00000347519 PLA2G2DQ9UNK4 145 aa12□□□□□ -0.49
CHMP4A-201ENST00000347519 FXYD2P54710 66 aa11.99□□□□□ -0.49
CHMP4A-201ENST00000347519 DPH3Q96FX2 82 aa11.99□□□□□ -0.49
CHMP4A-201ENST00000347519 PPDPFQ9H3Y8 114 aa11.99□□□□□ -0.49
CHMP4A-201ENST00000347519 LINC00474Q9P2X8 69 aa11.99□□□□□ -0.49
CHMP4A-201ENST00000347519 HERC2O95714 4834 aa11.98□□□□□ -0.49
CHMP4A-201ENST00000347519 A4D1N5 150 aa11.98□□□□□ -0.49
CHMP4A-201ENST00000347519 NCR3O14931 201 aa11.97□□□□□ -0.49
CHMP4A-201ENST00000347519 IGLV5-37A0A075B6J1 123 aa11.96□□□□□ -0.49
CHMP4A-201ENST00000347519 IGKV2-28A0A075B6P5 120 aa11.96□□□□□ -0.49
CHMP4A-201ENST00000347519 PCP4L1A6NKN8 68 aa11.96□□□□□ -0.49
CHMP4A-201ENST00000347519 EPM2AB3EWF7 344 aa11.96□□□□□ -0.49
CHMP4A-201ENST00000347519 IGKV2D-28P01615 120 aa11.96□□□□□ -0.49
CHMP4A-201ENST00000347519 PLAC8Q9NZF1 115 aa11.96□□□□□ -0.49
CHMP4A-201ENST00000347519 C22orf24Q9Y442 160 aa11.96□□□□□ -0.49
CHMP4A-201ENST00000347519 NDUFC2O95298 119 aa11.95□□□□□ -0.5
CHMP4A-201ENST00000347519 HINT1P49773 126 aaPredicted RBP11.95□□□□□ -0.5
CHMP4A-201ENST00000347519 SCXQ7RTU7 201 aa11.95□□□□□ -0.5
CHMP4A-201ENST00000347519 CIRBP-AS1Q8TBR5 109 aa11.95□□□□□ -0.5
CHMP4A-201ENST00000347519 COPS9Q8WXC6 57 aa11.95□□□□□ -0.5
CHMP4A-201ENST00000347519 RPL24P83731 157 aaKnown RBP11.94□□□□□ -0.5
CHMP4A-201ENST00000347519 BVES-AS1Q5T3Y7 98 aa11.94□□□□□ -0.5
CHMP4A-201ENST00000347519 PHF5AQ7RTV0 110 aaKnown RBP11.93□□□□□ -0.5
CHMP4A-201ENST00000347519 KIAA1109Q2LD37 5005 aa11.93□□□□□ -0.5
CHMP4A-201ENST00000347519 M0QXV9 152 aa11.92□□□□□ -0.5
CHMP4A-201ENST00000347519 C7orf33Q8WU49 177 aa11.92□□□□□ -0.5
CHMP4A-201ENST00000347519 PCLOQ9Y6V0 5065 aa11.92□□□□□ -0.5
CHMP4A-201ENST00000347519 GAGE10A6NGK3 116 aa11.92□□□□□ -0.5
CHMP4A-201ENST00000347519 XGP55808 180 aa11.92□□□□□ -0.5
CHMP4A-201ENST00000347519 LINC00337Q8N6G1 96 aa11.92□□□□□ -0.5
CHMP4A-201ENST00000347519 NKAPP1Q8N9T2 125 aa11.92□□□□□ -0.5
CHMP4A-201ENST00000347519 CFC1BP0CG36 223 aa11.91□□□□□ -0.5
CHMP4A-201ENST00000347519 CFC1P0CG37 223 aa11.91□□□□□ -0.5
CHMP4A-201ENST00000347519 KRTAP11-1Q8IUC1 163 aa11.91□□□□□ -0.5
CHMP4A-201ENST00000347519 LINC00167Q96N53 147 aa11.91□□□□□ -0.5
CHMP4A-201ENST00000347519 M0R378 163 aa11.9□□□□□ -0.5
CHMP4A-201ENST00000347519 TRBV10-2A0A0K0K1G8 114 aa11.89□□□□□ -0.51
CHMP4A-201ENST00000347519 MRPL55Q7Z7F7 128 aaKnown RBP11.89□□□□□ -0.51
CHMP4A-201ENST00000347519 RPL37AP8A6NKH3 93 aa11.87□□□□□ -0.51
CHMP4A-201ENST00000347519 K7ERJ3 54 aa11.87□□□□□ -0.51
CHMP4A-201ENST00000347519 NHP2Q9NX24 153 aaKnown RBP11.87□□□□□ -0.51
CHMP4A-201ENST00000347519 RYR1P21817 5038 aa11.86□□□□□ -0.51
CHMP4A-201ENST00000347519 TRBV10-3A0A0K0K1G6 114 aa11.86□□□□□ -0.51
CHMP4A-201ENST00000347519 M0R143 59 aa11.86□□□□□ -0.51
CHMP4A-201ENST00000347519 HSPG2P98160 4391 aa11.86□□□□□ -0.51
CHMP4A-201ENST00000347519 TMEM238LA0A1B0GVL6 79 aa11.85□□□□□ -0.51
CHMP4A-201ENST00000347519 A6NJY4 79 aa11.85□□□□□ -0.51
CHMP4A-201ENST00000347519 BATFQ16520 125 aa11.85□□□□□ -0.51
CHMP4A-201ENST00000347519 A0A0B4J2C4 111 aa11.84□□□□□ -0.51
CHMP4A-201ENST00000347519 A0A1B0GWB2 263 aa11.84□□□□□ -0.51
CHMP4A-201ENST00000347519 IGLV6-57P01721 117 aa11.84□□□□□ -0.51
CHMP4A-201ENST00000347519 OR13C6PQ8NH95 151 aa11.84□□□□□ -0.51
CHMP4A-201ENST00000347519 IGLV1-50A0A075B6I6 118 aa11.83□□□□□ -0.52
CHMP4A-201ENST00000347519 A6NDN8 102 aa11.83□□□□□ -0.52
CHMP4A-201ENST00000347519 LBHQ53QV2 105 aaPredicted RBP11.83□□□□□ -0.52
CHMP4A-201ENST00000347519 SNHG12Q9BXW3 62 aa11.83□□□□□ -0.52
CHMP4A-201ENST00000347519 S100A7L2Q5SY68 101 aa11.82□□□□□ -0.52
CHMP4A-201ENST00000347519 FAT1Q14517 4588 aa11.82□□□□□ -0.52
CHMP4A-201ENST00000347519 TRAV13-2A0A0B4J235 113 aa11.81□□□□□ -0.52
CHMP4A-201ENST00000347519 RPL13AP40429 203 aaKnown RBP11.81□□□□□ -0.52
CHMP4A-201ENST00000347519 RAB37Q96AX2 223 aa11.81□□□□□ -0.52
CHMP4A-201ENST00000347519 UBE2BP63146 152 aa11.8□□□□□ -0.52
CHMP4A-201ENST00000347519 TMEM126AQ9H061 195 aa11.79□□□□□ -0.52
CHMP4A-201ENST00000347519 SVIPQ8NHG7 77 aa11.79□□□□□ -0.52
CHMP4A-201ENST00000347519 PRO1854Q9UHT4 67 aa11.79□□□□□ -0.52
CHMP4A-201ENST00000347519 H7C2G1 150 aa11.78□□□□□ -0.52
CHMP4A-201ENST00000347519 SMR3BP02814 79 aaPredicted RBP11.78□□□□□ -0.52
CHMP4A-201ENST00000347519 KCNQ1DNQ9H478 68 aa11.78□□□□□ -0.52
CHMP4A-201ENST00000347519 SMIM11BQ8TCY0 68 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms