RNA–Protein interactions for RNA: ENST00000344824.10

TPM4-202, Transcript of tropomyosin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TPM4, Length 1,417 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-202ENST00000344824 TRBV30A0A0K0K1B3 111 aa8.84□□□□□ -0.99
TPM4-202ENST00000344824 HNRNPA3P51991 378 aaKnown RBP8.84□□□□□ -0.99
TPM4-202ENST00000344824 C2orf91Q6ZV80 131 aa8.84□□□□□ -0.99
TPM4-202ENST00000344824 DAND5Q8N907 189 aa8.84□□□□□ -0.99
TPM4-202ENST00000344824 NPC2P61916 151 aa8.83□□□□□ -1
TPM4-202ENST00000344824 CIRBPQ14011 172 aaKnown RBP8.83□□□□□ -1
TPM4-202ENST00000344824 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.83□□□□□ -1
TPM4-202ENST00000344824 FLG2Q5D862 2391 aaPredicted RBP8.83□□□□□ -1
TPM4-202ENST00000344824 PLA2G1BP04054 148 aaKnown RBP8.82□□□□□ -1
TPM4-202ENST00000344824 DPH3Q96FX2 82 aa8.82□□□□□ -1
TPM4-202ENST00000344824 PCP4L1A6NKN8 68 aa8.81□□□□□ -1
TPM4-202ENST00000344824 TMEM238C9JI98 176 aa8.81□□□□□ -1
TPM4-202ENST00000344824 PANO1I0J062 215 aa8.81□□□□□ -1
TPM4-202ENST00000344824 CHTF8P0CG12 524 aa8.81□□□□□ -1
TPM4-202ENST00000344824 RPL18AQ02543 176 aaKnown RBP8.81□□□□□ -1
TPM4-202ENST00000344824 ADAMTSL4-AS1Q5T5F5 129 aa8.81□□□□□ -1
TPM4-202ENST00000344824 MIR7-3HGQ8N6C7 128 aa8.81□□□□□ -1
TPM4-202ENST00000344824 LITAFQ99732 161 aa8.81□□□□□ -1
TPM4-202ENST00000344824 IGKV2-24A0A0C4DH68 120 aa8.8□□□□□ -1
TPM4-202ENST00000344824 LINC00587B1AMM8 73 aa8.8□□□□□ -1
TPM4-202ENST00000344824 TIMM17BO60830 172 aa8.8□□□□□ -1
TPM4-202ENST00000344824 SRSF9Q13242 221 aaKnown RBP eCLIP8.8□□□□□ -1
TPM4-202ENST00000344824 SDIM1Q6ZPB5 146 aa8.8□□□□□ -1
TPM4-202ENST00000344824 RNF151Q2KHN1 245 aa8.8□□□□□ -1
TPM4-202ENST00000344824 GAGE2EQ4V326 116 aa8.8□□□□□ -1
TPM4-202ENST00000344824 HIST1H4GQ99525 98 aa8.8□□□□□ -1
TPM4-202ENST00000344824 HIGD1BQ9P298 99 aa8.8□□□□□ -1
TPM4-202ENST00000344824 GAGE2DQ9UEU5 116 aa8.8□□□□□ -1
TPM4-202ENST00000344824 NDUFC2-KCTD14E9PQ53 114 aa8.79□□□□□ -1
TPM4-202ENST00000344824 GAGE2BQ13066 116 aa8.79□□□□□ -1
TPM4-202ENST00000344824 COX17Q14061 63 aa8.79□□□□□ -1
TPM4-202ENST00000344824 LOC107984640A0A0U1RRK4 108 aa8.78□□□□□ -1
TPM4-202ENST00000344824 DDTP30046 118 aa8.78□□□□□ -1
TPM4-202ENST00000344824 CTAG1AP78358 180 aa8.78□□□□□ -1
TPM4-202ENST00000344824 Q6ZRP5 223 aa8.78□□□□□ -1
TPM4-202ENST00000344824 SPANXDQ9BXN6 97 aa8.78□□□□□ -1
TPM4-202ENST00000344824 SPANXB1Q9NS25 103 aaPredicted RBP8.78□□□□□ -1
TPM4-202ENST00000344824 SPANXCQ9NY87 97 aa8.78□□□□□ -1
TPM4-202ENST00000344824 MYCBP2O75592 4640 aa8.77□□□□□ -1.01
TPM4-202ENST00000344824 XAGE1AQ9HD64 81 aa8.77□□□□□ -1.01
TPM4-202ENST00000344824 RPL37AP61513 92 aaKnown RBP8.76□□□□□ -1.01
TPM4-202ENST00000344824 MUSTN1Q8IVN3 82 aa8.76□□□□□ -1.01
TPM4-202ENST00000344824 SPACA4Q8TDM5 124 aa8.76□□□□□ -1.01
TPM4-202ENST00000344824 SND1-IT1Q9HBX3 110 aa8.76□□□□□ -1.01
TPM4-202ENST00000344824 EIF4EBP3O60516 100 aaPredicted RBP8.75□□□□□ -1.01
TPM4-202ENST00000344824 TLX1NBP0CAT3 122 aa8.75□□□□□ -1.01
TPM4-202ENST00000344824 HSD52Q0P140 79 aa8.75□□□□□ -1.01
TPM4-202ENST00000344824 SOSTDC1Q6X4U4 206 aa8.75□□□□□ -1.01
TPM4-202ENST00000344824 LINC00308Q8TCZ7 52 aa8.75□□□□□ -1.01
TPM4-202ENST00000344824 DMBT1Q9UGM3 2413 aaPredicted RBP8.75□□□□□ -1.01
TPM4-202ENST00000344824 A0A087WYN8 130 aa8.74□□□□□ -1.01
TPM4-202ENST00000344824 A0A096LNI7 61 aa8.74□□□□□ -1.01
TPM4-202ENST00000344824 PKIGQ9Y2B9 76 aa8.74□□□□□ -1.01
TPM4-202ENST00000344824 HINT1P49773 126 aaPredicted RBP8.72□□□□□ -1.01
TPM4-202ENST00000344824 PTTG1IPP53801 180 aa8.72□□□□□ -1.01
TPM4-202ENST00000344824 TAL2Q16559 108 aa8.72□□□□□ -1.01
TPM4-202ENST00000344824 Q6ZVH6 145 aa8.72□□□□□ -1.01
TPM4-202ENST00000344824 CEND1Q8N111 149 aa8.72□□□□□ -1.01
TPM4-202ENST00000344824 IFITM1P13164 125 aa8.71□□□□□ -1.01
TPM4-202ENST00000344824 C9orf129Q5T035 196 aaKnown RBP8.71□□□□□ -1.01
TPM4-202ENST00000344824 FXYD2P54710 66 aa8.71□□□□□ -1.02
TPM4-202ENST00000344824 BATFQ16520 125 aa8.71□□□□□ -1.02
TPM4-202ENST00000344824 COPS9Q8WXC6 57 aa8.71□□□□□ -1.02
TPM4-202ENST00000344824 LOC100996750A0A140TA64 210 aa8.7□□□□□ -1.02
TPM4-202ENST00000344824 RPL24P83731 157 aaKnown RBP8.7□□□□□ -1.02
TPM4-202ENST00000344824 KRTAP4-6Q9BYQ5 205 aa8.7□□□□□ -1.02
TPM4-202ENST00000344824 FAM168BA1KXE4 195 aa8.69□□□□□ -1.02
TPM4-202ENST00000344824 A4D1N5 150 aa8.69□□□□□ -1.02
TPM4-202ENST00000344824 Q8NDZ9 215 aa8.69□□□□□ -1.02
TPM4-202ENST00000344824 C7orf33Q8WU49 177 aa8.69□□□□□ -1.02
TPM4-202ENST00000344824 PLAC8Q9NZF1 115 aa8.69□□□□□ -1.02
TPM4-202ENST00000344824 LINC00474Q9P2X8 69 aa8.69□□□□□ -1.02
TPM4-202ENST00000344824 NCR3O14931 201 aa8.68□□□□□ -1.02
TPM4-202ENST00000344824 KRTAP10-4P60372 401 aaPredicted RBP8.68□□□□□ -1.02
TPM4-202ENST00000344824 BVES-AS1Q5T3Y7 98 aa8.68□□□□□ -1.02
TPM4-202ENST00000344824 FAM19A5Q7Z5A7 132 aaPredicted RBP8.68□□□□□ -1.02
TPM4-202ENST00000344824 A6NJY4 79 aa8.67□□□□□ -1.02
TPM4-202ENST00000344824 M0R143 59 aa8.67□□□□□ -1.02
TPM4-202ENST00000344824 PRR3P79522 188 aaKnown RBP8.67□□□□□ -1.02
TPM4-202ENST00000344824 SERTAD4-AS1Q5TG53 156 aa8.67□□□□□ -1.02
TPM4-202ENST00000344824 PKHD1L1Q86WI1 4243 aa8.67□□□□□ -1.02
TPM4-202ENST00000344824 LOC107984156A0A0G2JMH3 177 aa8.66□□□□□ -1.02
TPM4-202ENST00000344824 ARL17AQ8IVW1 177 aa8.66□□□□□ -1.02
TPM4-202ENST00000344824 NHP2Q9NX24 153 aaKnown RBP8.66□□□□□ -1.02
TPM4-202ENST00000344824 HERC1Q15751 4861 aa8.66□□□□□ -1.02
TPM4-202ENST00000344824 TMEM238LA0A1B0GVL6 79 aa8.65□□□□□ -1.02
TPM4-202ENST00000344824 A0A1W2PNN7 141 aa8.64□□□□□ -1.03
TPM4-202ENST00000344824 VPREB1P12018 145 aa8.64□□□□□ -1.03
TPM4-202ENST00000344824 NKAPP1Q8N9T2 125 aa8.64□□□□□ -1.03
TPM4-202ENST00000344824 K7ERJ3 54 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 PPDPFQ9H3Y8 114 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 IGKV2-28A0A075B6P5 120 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 NDUFC2O95298 119 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 IGKV2D-28P01615 120 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 CFC1BP0CG36 223 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 CFC1P0CG37 223 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 KRTAP7-1Q8IUC3 87 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 OR13C6PQ8NH95 151 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 RAB37Q96AX2 223 aa8.63□□□□□ -1.03
TPM4-202ENST00000344824 LRP1Q07954 4544 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms