RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 Q6YL49 198 aa2.53□□□□□ -2
NEDD4-201ENST00000338963 GOLGA4Q13439 2230 aaKnown RBP2.53□□□□□ -2.01
NEDD4-201ENST00000338963 ABCA7Q8IZY2 2146 aa2.52□□□□□ -2.01
NEDD4-201ENST00000338963 SPAG17Q6Q759 2223 aa2.52□□□□□ -2.01
NEDD4-201ENST00000338963 TET2Q6N021 2002 aaPredicted RBP2.52□□□□□ -2.01
NEDD4-201ENST00000338963 ARHGEF17Q96PE2 2063 aaPredicted RBP2.52□□□□□ -2.01
NEDD4-201ENST00000338963 POLEQ07864 2286 aa2.51□□□□□ -2.01
NEDD4-201ENST00000338963 NOTCH4Q99466 2003 aa2.51□□□□□ -2.01
NEDD4-201ENST00000338963 NDUFAF8A1L188 74 aa2.51□□□□□ -2.01
NEDD4-201ENST00000338963 PLA2G2CQ5R387 149 aa2.51□□□□□ -2.01
NEDD4-201ENST00000338963 LINC00304Q8N9R0 145 aa2.5□□□□□ -2.01
NEDD4-201ENST00000338963 CRIPTQ9P021 101 aa2.5□□□□□ -2.01
NEDD4-201ENST00000338963 GIG44P09565 113 aaPredicted RBP2.5□□□□□ -2.01
NEDD4-201ENST00000338963 C14orf177Q52M58 125 aa2.5□□□□□ -2.01
NEDD4-201ENST00000338963 PANO1I0J062 215 aa2.49□□□□□ -2.01
NEDD4-201ENST00000338963 KRTAP11-1Q8IUC1 163 aa2.49□□□□□ -2.01
NEDD4-201ENST00000338963 SNRNP200O75643 2136 aaKnown RBP2.49□□□□□ -2.01
NEDD4-201ENST00000338963 LINC01556Q5JQF7 62 aa2.49□□□□□ -2.01
NEDD4-201ENST00000338963 MYO7BQ6PIF6 2116 aa2.49□□□□□ -2.01
NEDD4-201ENST00000338963 C10orf99Q6UWK7 81 aa2.49□□□□□ -2.01
NEDD4-201ENST00000338963 COX6B2Q6YFQ2 88 aa2.49□□□□□ -2.01
NEDD4-201ENST00000338963 DYSFO75923 2080 aa2.49□□□□□ -2.01
NEDD4-201ENST00000338963 INTS1Q8N201 2190 aaKnown RBP2.49□□□□□ -2.01
NEDD4-201ENST00000338963 P0C880 135 aa2.49□□□□□ -2.01
NEDD4-201ENST00000338963 A0A1B0GU33 70 aa2.48□□□□□ -2.01
NEDD4-201ENST00000338963 HTN3P15516 51 aa2.48□□□□□ -2.01
NEDD4-201ENST00000338963 DSCAML1Q8TD84 2053 aa2.47□□□□□ -2.01
NEDD4-201ENST00000338963 IGKV2-30P06310 120 aa2.47□□□□□ -2.01
NEDD4-201ENST00000338963 NACAE9PAV3 2078 aa2.47□□□□□ -2.01
NEDD4-201ENST00000338963 ARFGEF3Q5TH69 2177 aa2.47□□□□□ -2.01
NEDD4-201ENST00000338963 IGKV2D-30A0A075B6S6 120 aa2.47□□□□□ -2.01
NEDD4-201ENST00000338963 A0A087WTM6 91 aa2.47□□□□□ -2.01
NEDD4-201ENST00000338963 MED12Q93074 2177 aa2.47□□□□□ -2.01
NEDD4-201ENST00000338963 DEFB124Q8NES8 71 aa2.46□□□□□ -2.02
NEDD4-201ENST00000338963 KNTC1P50748 2209 aa2.46□□□□□ -2.02
NEDD4-201ENST00000338963 COL27A1Q8IZC6 1860 aaPredicted RBP2.45□□□□□ -2.02
NEDD4-201ENST00000338963 H1FX-AS1Q4G0G2 97 aa2.45□□□□□ -2.02
NEDD4-201ENST00000338963 ZNF407Q9C0G0 2248 aa2.45□□□□□ -2.02
NEDD4-201ENST00000338963 NAV3Q8IVL0 2385 aa2.45□□□□□ -2.02
NEDD4-201ENST00000338963 PRRC2AP48634 2157 aaKnown RBP2.45□□□□□ -2.02
NEDD4-201ENST00000338963 PRRC2BQ5JSZ5 2229 aaKnown RBP2.45□□□□□ -2.02
NEDD4-201ENST00000338963 PRLHP81277 87 aa2.44□□□□□ -2.02
NEDD4-201ENST00000338963 BPTFQ12830 3046 aa2.44□□□□□ -2.02
NEDD4-201ENST00000338963 TNCP24821 2201 aa2.44□□□□□ -2.02
NEDD4-201ENST00000338963 PSORS1C2Q9UIG4 136 aa2.44□□□□□ -2.02
NEDD4-201ENST00000338963 Q96NJ1 140 aa2.44□□□□□ -2.02
NEDD4-201ENST00000338963 KRTAP15-1Q3LI76 137 aa2.43□□□□□ -2.02
NEDD4-201ENST00000338963 ESPL1Q14674 2120 aa2.43□□□□□ -2.02
NEDD4-201ENST00000338963 KRTAP13-3Q3SY46 172 aa2.43□□□□□ -2.02
NEDD4-201ENST00000338963 A0A0G2JQZ4 141 aa2.42□□□□□ -2.02
NEDD4-201ENST00000338963 A0A1W2PNN7 141 aa2.42□□□□□ -2.02
NEDD4-201ENST00000338963 RPL37P61927 97 aaKnown RBP2.42□□□□□ -2.02
NEDD4-201ENST00000338963 CIRBP-AS1Q8TBR5 109 aa2.42□□□□□ -2.02
NEDD4-201ENST00000338963 MUC4Q99102 2169 aa2.41□□□□□ -2.02
NEDD4-201ENST00000338963 FER1L5A0AVI2 2057 aa2.41□□□□□ -2.02
NEDD4-201ENST00000338963 DEFB135Q30KP9 77 aa2.41□□□□□ -2.02
NEDD4-201ENST00000338963 A0A096LNI7 61 aa2.4□□□□□ -2.02
NEDD4-201ENST00000338963 J3QL48 77 aa2.4□□□□□ -2.02
NEDD4-201ENST00000338963 SPINK1P00995 79 aa2.4□□□□□ -2.02
NEDD4-201ENST00000338963 SDK2Q58EX2 2172 aa2.4□□□□□ -2.02
NEDD4-201ENST00000338963 ZGRF1Q86YA3 2104 aa2.4□□□□□ -2.02
NEDD4-201ENST00000338963 NBDYA0A0U1RRE5 68 aa2.4□□□□□ -2.03
NEDD4-201ENST00000338963 Q6ZSA8 131 aa2.39□□□□□ -2.03
NEDD4-201ENST00000338963 MED13Q9UHV7 2174 aa2.39□□□□□ -2.03
NEDD4-201ENST00000338963 DOCK7Q96N67 2140 aa2.39□□□□□ -2.03
NEDD4-201ENST00000338963 ZNF318Q5VUA4 2279 aa2.39□□□□□ -2.03
NEDD4-201ENST00000338963 RP1P56715 2156 aa2.39□□□□□ -2.03
NEDD4-201ENST00000338963 PI4KAP42356 2102 aa2.39□□□□□ -2.03
NEDD4-201ENST00000338963 PCNX2A6NKB5 2137 aa2.39□□□□□ -2.03
NEDD4-201ENST00000338963 FREM1Q5H8C1 2179 aa2.39□□□□□ -2.03
NEDD4-201ENST00000338963 H0YAA0 97 aa2.38□□□□□ -2.03
NEDD4-201ENST00000338963 PRR14LQ5THK1 2151 aa2.38□□□□□ -2.03
NEDD4-201ENST00000338963 A0A1W2PPR1 153 aa2.37□□□□□ -2.03
NEDD4-201ENST00000338963 SPINK6Q6UWN8 80 aa2.37□□□□□ -2.03
NEDD4-201ENST00000338963 RTTNQ86VV8 2226 aa2.37□□□□□ -2.03
NEDD4-201ENST00000338963 MALRD1Q5VYJ5 2156 aa2.36□□□□□ -2.03
NEDD4-201ENST00000338963 DEFB4AO15263 64 aa2.36□□□□□ -2.03
NEDD4-201ENST00000338963 F5P12259 2224 aa2.36□□□□□ -2.03
NEDD4-201ENST00000338963 KRTAP7-1Q8IUC3 87 aa2.35□□□□□ -2.03
NEDD4-201ENST00000338963 KRTAP24-1Q3LI83 254 aa2.35□□□□□ -2.03
NEDD4-201ENST00000338963 CACNA1GO43497 2377 aa2.35□□□□□ -2.03
NEDD4-201ENST00000338963 K7EIL1 84 aa2.34□□□□□ -2.03
NEDD4-201ENST00000338963 MYO7AQ13402 2215 aa2.34□□□□□ -2.03
NEDD4-201ENST00000338963 KRTAP13-1Q8IUC0 172 aa2.33□□□□□ -2.04
NEDD4-201ENST00000338963 LCE2DQ5TA82 110 aaPredicted RBP2.33□□□□□ -2.04
NEDD4-201ENST00000338963 WWC2-AS2Q96NR7 200 aa2.32□□□□□ -2.04
NEDD4-201ENST00000338963 PLAC4Q8WY50 150 aa2.32□□□□□ -2.04
NEDD4-201ENST00000338963 SEC16AO15027 2179 aa2.31□□□□□ -2.04
NEDD4-201ENST00000338963 TPRXLQ17RH7 258 aa2.31□□□□□ -2.04
NEDD4-201ENST00000338963 J3QKU1 62 aa2.31□□□□□ -2.04
NEDD4-201ENST00000338963 PDE4DIPQ5VU43 2346 aa2.31□□□□□ -2.04
NEDD4-201ENST00000338963 UBE2DNLQ8IWF7 75 aa2.3□□□□□ -2.04
NEDD4-201ENST00000338963 KIAA0100Q14667 2235 aaKnown RBP2.3□□□□□ -2.04
NEDD4-201ENST00000338963 ARHGAP32A7KAX9 2087 aa2.3□□□□□ -2.04
NEDD4-201ENST00000338963 BRWD1Q9NSI6 2320 aa2.29□□□□□ -2.04
NEDD4-201ENST00000338963 WNK1Q9H4A3 2382 aa2.29□□□□□ -2.04
NEDD4-201ENST00000338963 APLNQ9ULZ1 77 aa2.29□□□□□ -2.04
NEDD4-201ENST00000338963 Q8N1X5 172 aa2.29□□□□□ -2.04
NEDD4-201ENST00000338963 PRO2289Q9P1D8 64 aa2.29□□□□□ -2.04
NEDD4-201ENST00000338963 DOCK10Q96BY6 2186 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms