RNA–Protein interactions for RNA: ENST00000338888.3

RUNX3-202, Transcript of runt related transcription factor 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RUNX3, Length 2,629 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-202ENST00000338888 LINC00336Q6ZUF6 198 aa13.94□□□□□ -0.18
RUNX3-202ENST00000338888 LINC00269Q8N2A0 174 aa13.94□□□□□ -0.18
RUNX3-202ENST00000338888 LOC110117498A0A087WWA1 95 aa13.94□□□□□ -0.18
RUNX3-202ENST00000338888 GYPEP15421 78 aa13.94□□□□□ -0.18
RUNX3-202ENST00000338888 SPATA3Q8NHX4 192 aa13.94□□□□□ -0.18
RUNX3-202ENST00000338888 MTORP42345 2549 aa13.94□□□□□ -0.18
RUNX3-202ENST00000338888 BCE1O60756 84 aa13.94□□□□□ -0.18
RUNX3-202ENST00000338888 CSNK1G2-AS1Q8NCQ2 148 aa13.94□□□□□ -0.18
RUNX3-202ENST00000338888 C6orf223Q8N319 242 aa13.93□□□□□ -0.18
RUNX3-202ENST00000338888 MRAPQ8TCY5 172 aa13.93□□□□□ -0.18
RUNX3-202ENST00000338888 IGLV10-54A0A075B6I4 117 aa13.93□□□□□ -0.18
RUNX3-202ENST00000338888 F8WEM9 126 aa13.93□□□□□ -0.18
RUNX3-202ENST00000338888 COX17Q14061 63 aa13.93□□□□□ -0.18
RUNX3-202ENST00000338888 A0A1B0GUV1 79 aa13.92□□□□□ -0.18
RUNX3-202ENST00000338888 SETD2Q9BYW2 2564 aaPredicted RBP13.91□□□□□ -0.18
RUNX3-202ENST00000338888 Q6ZQY7 126 aa13.89□□□□□ -0.19
RUNX3-202ENST00000338888 SCXQ7RTU7 201 aa13.89□□□□□ -0.19
RUNX3-202ENST00000338888 Q8N3U1 123 aa13.89□□□□□ -0.19
RUNX3-202ENST00000338888 FN1P02751 2386 aaKnown RBP13.89□□□□□ -0.19
RUNX3-202ENST00000338888 CD164L2Q6UWJ8 174 aa13.87□□□□□ -0.19
RUNX3-202ENST00000338888 FP248Q71RG6 208 aaPredicted RBP13.87□□□□□ -0.19
RUNX3-202ENST00000338888 CHCHD10Q8WYQ3 142 aaPredicted RBP13.87□□□□□ -0.19
RUNX3-202ENST00000338888 TM2D3Q9BRN9 247 aa13.87□□□□□ -0.19
RUNX3-202ENST00000338888 C19orf73Q9NVV2 129 aa13.87□□□□□ -0.19
RUNX3-202ENST00000338888 PRO0628Q9UI54 55 aa13.86□□□□□ -0.19
RUNX3-202ENST00000338888 IGHV4-28A0A0C4DH34 117 aa13.86□□□□□ -0.19
RUNX3-202ENST00000338888 DNAJC9-AS1A6NH13 148 aa13.85□□□□□ -0.19
RUNX3-202ENST00000338888 KRTAP1-1Q07627 177 aa13.85□□□□□ -0.19
RUNX3-202ENST00000338888 CXCL6P80162 114 aa13.85□□□□□ -0.19
RUNX3-202ENST00000338888 SMIM26A0A096LP01 95 aa13.84□□□□□ -0.19
RUNX3-202ENST00000338888 LINC01006Q8NI28 216 aa13.84□□□□□ -0.19
RUNX3-202ENST00000338888 ESM1Q9NQ30 184 aa13.84□□□□□ -0.19
RUNX3-202ENST00000338888 CMC4P56277 68 aaPredicted RBP13.84□□□□□ -0.19
RUNX3-202ENST00000338888 C10orf25Q5T742 122 aa13.84□□□□□ -0.19
RUNX3-202ENST00000338888 C16orf95Q9H693 158 aa13.84□□□□□ -0.19
RUNX3-202ENST00000338888 MUC7Q8TAX7 377 aa13.83□□□□□ -0.2
RUNX3-202ENST00000338888 SMR3AQ99954 134 aa13.83□□□□□ -0.2
RUNX3-202ENST00000338888 UNQ6190/PRO20217Q6UXQ8 127 aa13.82□□□□□ -0.2
RUNX3-202ENST00000338888 LINC00474Q9P2X8 69 aa13.82□□□□□ -0.2
RUNX3-202ENST00000338888 ANGP03950 147 aaKnown RBP13.82□□□□□ -0.2
RUNX3-202ENST00000338888 C9orf66Q5T8R8 295 aa13.81□□□□□ -0.2
RUNX3-202ENST00000338888 TRBV7-6A0A0J9YX20 115 aa13.8□□□□□ -0.2
RUNX3-202ENST00000338888 PDE6GP18545 87 aa13.8□□□□□ -0.2
RUNX3-202ENST00000338888 REG3AQ06141 175 aa13.79□□□□□ -0.2
RUNX3-202ENST00000338888 IGLV6-57P01721 117 aa13.79□□□□□ -0.2
RUNX3-202ENST00000338888 C1orf43Q9BWL3 253 aa13.78□□□□□ -0.2
RUNX3-202ENST00000338888 ANK3Q12955 4377 aaKnown RBP13.78□□□□□ -0.2
RUNX3-202ENST00000338888 TRBV7-4A0A0J9YYF1 115 aa13.78□□□□□ -0.2
RUNX3-202ENST00000338888 PRO0255Q9UI72 69 aa13.77□□□□□ -0.2
RUNX3-202ENST00000338888 MIFP14174 115 aa13.77□□□□□ -0.21
RUNX3-202ENST00000338888 IGLV1-51P01701 117 aa13.76□□□□□ -0.21
RUNX3-202ENST00000338888 HIVEP2P31629 2446 aa13.76□□□□□ -0.21
RUNX3-202ENST00000338888 NBEAL2Q6ZNJ1 2754 aa13.76□□□□□ -0.21
RUNX3-202ENST00000338888 NDUFC1O43677 76 aa13.75□□□□□ -0.21
RUNX3-202ENST00000338888 SPAG11BQ08648 103 aa13.75□□□□□ -0.21
RUNX3-202ENST00000338888 NREPQ16612 68 aa13.75□□□□□ -0.21
RUNX3-202ENST00000338888 CYSRT1A8MQ03 144 aa13.74□□□□□ -0.21
RUNX3-202ENST00000338888 LINC00612Q8N6U2 182 aa13.73□□□□□ -0.21
RUNX3-202ENST00000338888 PKIGQ9Y2B9 76 aa13.73□□□□□ -0.21
RUNX3-202ENST00000338888 DIRC1Q969H9 104 aa13.72□□□□□ -0.21
RUNX3-202ENST00000338888 BPY2O14599 106 aa13.72□□□□□ -0.21
RUNX3-202ENST00000338888 TMEM254Q8TBM7 123 aa13.72□□□□□ -0.21
RUNX3-202ENST00000338888 Q8N9L7 120 aa13.71□□□□□ -0.21
RUNX3-202ENST00000338888 XAGE1AQ9HD64 81 aa13.71□□□□□ -0.21
RUNX3-202ENST00000338888 OTOGQ6ZRI0 2925 aa13.7□□□□□ -0.22
RUNX3-202ENST00000338888 H3BQ85 93 aa13.69□□□□□ -0.22
RUNX3-202ENST00000338888 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.68□□□□□ -0.22
RUNX3-202ENST00000338888 A0A0J9YWU9 116 aa13.68□□□□□ -0.22
RUNX3-202ENST00000338888 IGHV4-30-4P0DP06 118 aa13.68□□□□□ -0.22
RUNX3-202ENST00000338888 ZNF73O43830 326 aaPredicted RBP13.67□□□□□ -0.22
RUNX3-202ENST00000338888 COX7BP24311 80 aa13.67□□□□□ -0.22
RUNX3-202ENST00000338888 ATP5EP56381 51 aaPredicted RBP13.66□□□□□ -0.22
RUNX3-202ENST00000338888 FAM229BQ4G0N7 80 aa13.66□□□□□ -0.22
RUNX3-202ENST00000338888 DEFB4AO15263 64 aa13.66□□□□□ -0.22
RUNX3-202ENST00000338888 BRK1Q8WUW1 75 aa13.66□□□□□ -0.22
RUNX3-202ENST00000338888 X6R8D5 127 aa13.66□□□□□ -0.22
RUNX3-202ENST00000338888 MPLKIPQ8TAP9 179 aa13.65□□□□□ -0.22
RUNX3-202ENST00000338888 ELOF1P60002 83 aaKnown RBP13.62□□□□□ -0.23
RUNX3-202ENST00000338888 C6orf48Q9UBA6 75 aa13.61□□□□□ -0.23
RUNX3-202ENST00000338888 IGKV4-1P06312 121 aa13.6□□□□□ -0.23
RUNX3-202ENST00000338888 A0A0U1RQV1 116 aa13.6□□□□□ -0.23
RUNX3-202ENST00000338888 KLK12Q9UKR0 248 aa13.6□□□□□ -0.23
RUNX3-202ENST00000338888 ERC2-IT1O76042 136 aa13.59□□□□□ -0.23
RUNX3-202ENST00000338888 PRYO14603 147 aa13.58□□□□□ -0.24
RUNX3-202ENST00000338888 INAFM1C9JVW0 142 aa13.58□□□□□ -0.24
RUNX3-202ENST00000338888 OCR1Q9BZK8 76 aa13.57□□□□□ -0.24
RUNX3-202ENST00000338888 DAD1P61803 113 aa13.57□□□□□ -0.24
RUNX3-202ENST00000338888 HIVEP1P15822 2718 aa13.56□□□□□ -0.24
RUNX3-202ENST00000338888 HIGD2AQ9BW72 106 aa13.55□□□□□ -0.24
RUNX3-202ENST00000338888 FLNBO75369 2602 aaKnown RBP13.55□□□□□ -0.24
RUNX3-202ENST00000338888 GVQW2A0A096LPI5 108 aaPredicted RBP13.55□□□□□ -0.24
RUNX3-202ENST00000338888 FUSP35637 526 aaKnown RBP eCLIP13.55□□□□□ -0.24
RUNX3-202ENST00000338888 C3orf84H3BNL1 204 aa13.54□□□□□ -0.24
RUNX3-202ENST00000338888 NSD1Q96L73 2696 aaPredicted RBP13.53□□□□□ -0.24
RUNX3-202ENST00000338888 LYRM9A8MSI8 78 aa13.53□□□□□ -0.24
RUNX3-202ENST00000338888 VPREB1P12018 145 aa13.52□□□□□ -0.25
RUNX3-202ENST00000338888 HTN3P15516 51 aa13.51□□□□□ -0.25
RUNX3-202ENST00000338888 Q6ZTC4 211 aa13.51□□□□□ -0.25
RUNX3-202ENST00000338888 ESRGQ1W209 222 aa13.51□□□□□ -0.25
RUNX3-202ENST00000338888 DEFB135Q30KP9 77 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms