RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TRIAP1O43715 76 aa12.17□□□□□ -0.46
USP39-201ENST00000323701 SND1-IT1Q9HBX3 110 aa12.17□□□□□ -0.46
USP39-201ENST00000323701 UBE2DNLQ8IWF7 75 aa12.16□□□□□ -0.46
USP39-201ENST00000323701 ANKRD29Q8N6D5 301 aa12.16□□□□□ -0.46
USP39-201ENST00000323701 ZNF561-AS1K7EIQ3 104 aa12.16□□□□□ -0.46
USP39-201ENST00000323701 RPL13AP40429 203 aaKnown RBP12.16□□□□□ -0.46
USP39-201ENST00000323701 C9JAW5 83 aa12.15□□□□□ -0.46
USP39-201ENST00000323701 Q8NDZ9 215 aa12.15□□□□□ -0.46
USP39-201ENST00000323701 LINC00337Q8N6G1 96 aa12.15□□□□□ -0.47
USP39-201ENST00000323701 PPDPFQ9H3Y8 114 aa12.15□□□□□ -0.47
USP39-201ENST00000323701 TRBV30A0A0K0K1B3 111 aa12.14□□□□□ -0.47
USP39-201ENST00000323701 SLC25A20O43772 301 aa12.14□□□□□ -0.47
USP39-201ENST00000323701 COX17Q14061 63 aa12.14□□□□□ -0.47
USP39-201ENST00000323701 Q6ZRU5 148 aa12.14□□□□□ -0.47
USP39-201ENST00000323701 COPS9Q8WXC6 57 aa12.14□□□□□ -0.47
USP39-201ENST00000323701 PRR3P79522 188 aaKnown RBP12.13□□□□□ -0.47
USP39-201ENST00000323701 ANAPC13Q9BS18 74 aa12.13□□□□□ -0.47
USP39-201ENST00000323701 KMT2AQ03164 3969 aa12.13□□□□□ -0.47
USP39-201ENST00000323701 CAMK2N2Q96S95 79 aa12.13□□□□□ -0.47
USP39-201ENST00000323701 GVQW2A0A096LPI5 108 aaPredicted RBP12.12□□□□□ -0.47
USP39-201ENST00000323701 LECT2O14960 151 aa12.12□□□□□ -0.47
USP39-201ENST00000323701 LINC01620Q4KN68 170 aa12.11□□□□□ -0.47
USP39-201ENST00000323701 USP17L23D6RBM5 183 aa12.11□□□□□ -0.47
USP39-201ENST00000323701 SLPIP03973 132 aa12.11□□□□□ -0.47
USP39-201ENST00000323701 ATXN8Q156A1 80 aa12.11□□□□□ -0.47
USP39-201ENST00000323701 C2orf48Q96LS8 159 aa12.08□□□□□ -0.48
USP39-201ENST00000323701 CLEC2BQ92478 149 aa12.07□□□□□ -0.48
USP39-201ENST00000323701 XAGE1AQ9HD64 81 aa12.07□□□□□ -0.48
USP39-201ENST00000323701 LINC01600Q96MT4 127 aa12.06□□□□□ -0.48
USP39-201ENST00000323701 RMI2Q96E14 147 aa12.05□□□□□ -0.48
USP39-201ENST00000323701 SYCNQ0VAF6 134 aa12.05□□□□□ -0.48
USP39-201ENST00000323701 TRBV10-2A0A0K0K1G8 114 aa12.04□□□□□ -0.48
USP39-201ENST00000323701 SNCGO76070 127 aa12.04□□□□□ -0.48
USP39-201ENST00000323701 GAGE2BQ13066 116 aa12.04□□□□□ -0.48
USP39-201ENST00000323701 GAGE2EQ4V326 116 aa12.04□□□□□ -0.48
USP39-201ENST00000323701 GAGE2DQ9UEU5 116 aa12.04□□□□□ -0.48
USP39-201ENST00000323701 DNAH2Q9P225 4427 aa12.04□□□□□ -0.48
USP39-201ENST00000323701 TRAV13-2A0A0B4J235 113 aa12.03□□□□□ -0.48
USP39-201ENST00000323701 Q6ZRP5 223 aa12.02□□□□□ -0.48
USP39-201ENST00000323701 SS18L2Q9UHA2 77 aa12.02□□□□□ -0.48
USP39-201ENST00000323701 NBDYA0A0U1RRE5 68 aa12.02□□□□□ -0.49
USP39-201ENST00000323701 NCR3O14931 201 aa12.02□□□□□ -0.49
USP39-201ENST00000323701 Q6Q795 121 aa12.02□□□□□ -0.49
USP39-201ENST00000323701 LST1O00453 97 aa12.01□□□□□ -0.49
USP39-201ENST00000323701 COX6CP09669 75 aa12.01□□□□□ -0.49
USP39-201ENST00000323701 NDUFV3P56181 108 aaKnown RBP12.01□□□□□ -0.49
USP39-201ENST00000323701 SMIM11BQ8TCY0 68 aa12.01□□□□□ -0.49
USP39-201ENST00000323701 TEX49A0A1B0GTD5 131 aa12.01□□□□□ -0.49
USP39-201ENST00000323701 NDUFC2O95298 119 aa12.01□□□□□ -0.49
USP39-201ENST00000323701 OR13C6PQ8NH95 151 aa12.01□□□□□ -0.49
USP39-201ENST00000323701 NDUFC2-KCTD14E9PQ53 114 aa12□□□□□ -0.49
USP39-201ENST00000323701 MUC7Q8TAX7 377 aa11.99□□□□□ -0.49
USP39-201ENST00000323701 B5MCH6 92 aa11.99□□□□□ -0.49
USP39-201ENST00000323701 M0R2N4 97 aa11.99□□□□□ -0.49
USP39-201ENST00000323701 TTC32Q5I0X7 151 aa11.98□□□□□ -0.49
USP39-201ENST00000323701 RPL28P46779 137 aaKnown RBP11.97□□□□□ -0.49
USP39-201ENST00000323701 F8WDY8 70 aa11.96□□□□□ -0.49
USP39-201ENST00000323701 PSCAO43653 123 aa11.96□□□□□ -0.49
USP39-201ENST00000323701 FAM218AQ96MZ4 157 aa11.96□□□□□ -0.49
USP39-201ENST00000323701 C9orf129Q5T035 196 aaKnown RBP11.96□□□□□ -0.5
USP39-201ENST00000323701 RPL18AQ02543 176 aaKnown RBP11.95□□□□□ -0.5
USP39-201ENST00000323701 Q6ZRN7 208 aaPredicted RBP11.95□□□□□ -0.5
USP39-201ENST00000323701 H3BT86 120 aa11.95□□□□□ -0.5
USP39-201ENST00000323701 VPREB1P12018 145 aa11.92□□□□□ -0.5
USP39-201ENST00000323701 CCDC179H3BU77 68 aa11.92□□□□□ -0.5
USP39-201ENST00000323701 LRCOL1A6NCL2 159 aa11.91□□□□□ -0.5
USP39-201ENST00000323701 TMEM126AQ9H061 195 aa11.91□□□□□ -0.5
USP39-201ENST00000323701 TLX1NBP0CAT3 122 aa11.9□□□□□ -0.5
USP39-201ENST00000323701 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.89□□□□□ -0.51
USP39-201ENST00000323701 HECTD4Q9Y4D8 3996 aa11.89□□□□□ -0.51
USP39-201ENST00000323701 HYDINQ4G0P3 5121 aa11.89□□□□□ -0.51
USP39-201ENST00000323701 FAM240AA0A1B0GVK7 77 aa11.89□□□□□ -0.51
USP39-201ENST00000323701 IGLV6-57P01721 117 aa11.89□□□□□ -0.51
USP39-201ENST00000323701 S100A7L2Q5SY68 101 aa11.89□□□□□ -0.51
USP39-201ENST00000323701 SERTAD4-AS1Q5TG53 156 aa11.89□□□□□ -0.51
USP39-201ENST00000323701 WWC2-AS2Q96NR7 200 aa11.89□□□□□ -0.51
USP39-201ENST00000323701 FAM168BA1KXE4 195 aa11.88□□□□□ -0.51
USP39-201ENST00000323701 A0A087WYN8 130 aa11.88□□□□□ -0.51
USP39-201ENST00000323701 TRBV10-3A0A0K0K1G6 114 aa11.88□□□□□ -0.51
USP39-201ENST00000323701 Q6ZR54 194 aa11.87□□□□□ -0.51
USP39-201ENST00000323701 DNAH6Q9C0G6 4158 aa11.87□□□□□ -0.51
USP39-201ENST00000323701 KRTAP7-1Q8IUC3 87 aa11.86□□□□□ -0.51
USP39-201ENST00000323701 CNBPP62633 177 aaKnown RBP11.85□□□□□ -0.51
USP39-201ENST00000323701 C6orf99Q4VX62 202 aa11.85□□□□□ -0.51
USP39-201ENST00000323701 ALMS1Q8TCU4 4167 aa11.85□□□□□ -0.51
USP39-201ENST00000323701 LY6G6CO95867 125 aa11.84□□□□□ -0.51
USP39-201ENST00000323701 C22orf24Q9Y442 160 aa11.83□□□□□ -0.52
USP39-201ENST00000323701 DNAH17Q9UFH2 4485 aa11.82□□□□□ -0.52
USP39-201ENST00000323701 TRBV7-7A0A0K0K1E9 115 aa11.82□□□□□ -0.52
USP39-201ENST00000323701 TRACP01848 142 aa11.82□□□□□ -0.52
USP39-201ENST00000323701 LOC107984640A0A0U1RRK4 108 aa11.81□□□□□ -0.52
USP39-201ENST00000323701 M0R378 163 aa11.81□□□□□ -0.52
USP39-201ENST00000323701 FRAS1Q86XX4 4008 aa11.81□□□□□ -0.52
USP39-201ENST00000323701 A0A096LNI7 61 aa11.81□□□□□ -0.52
USP39-201ENST00000323701 H0YGX0 51 aa11.8□□□□□ -0.52
USP39-201ENST00000323701 FUSP35637 526 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP39-201ENST00000323701 LINC00476Q8WZB0 136 aa11.79□□□□□ -0.52
USP39-201ENST00000323701 C7orf33Q8WU49 177 aa11.79□□□□□ -0.52
USP39-201ENST00000323701 TRAV23DV6A0A075B6W5 121 aa11.78□□□□□ -0.52
USP39-201ENST00000323701 BAALC-AS2P0C853 105 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms