RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 A0A0U1RRA0 63 aa11.49□□□□□ -0.57
LIME1-201ENST00000309546 LINC00158P58513 81 aa11.49□□□□□ -0.57
LIME1-201ENST00000309546 Q8NDZ9 215 aa11.49□□□□□ -0.57
LIME1-201ENST00000309546 IFI27L1Q96BM0 104 aa11.49□□□□□ -0.57
LIME1-201ENST00000309546 YPEL4Q96NS1 127 aa11.49□□□□□ -0.57
LIME1-201ENST00000309546 TMEM223A0PJW6 202 aa11.48□□□□□ -0.57
LIME1-201ENST00000309546 TRAV12-1A0A0B4J245 112 aa11.47□□□□□ -0.57
LIME1-201ENST00000309546 M0R378 163 aa11.46□□□□□ -0.57
LIME1-201ENST00000309546 KRTAP13-2Q52LG2 175 aa11.46□□□□□ -0.57
LIME1-201ENST00000309546 CBLN2Q8IUK8 224 aa11.45□□□□□ -0.58
LIME1-201ENST00000309546 HSBP1O75506 76 aa11.44□□□□□ -0.58
LIME1-201ENST00000309546 FAM229BQ4G0N7 80 aa11.44□□□□□ -0.58
LIME1-201ENST00000309546 H0Y8G0 127 aa11.43□□□□□ -0.58
LIME1-201ENST00000309546 ATP6V1G1O75348 118 aa11.43□□□□□ -0.58
LIME1-201ENST00000309546 S100A1P23297 94 aa11.43□□□□□ -0.58
LIME1-201ENST00000309546 MEIG1Q5JSS6 88 aa11.43□□□□□ -0.58
LIME1-201ENST00000309546 FAM19A2Q8N3H0 131 aa11.43□□□□□ -0.58
LIME1-201ENST00000309546 IGKV2D-26A0A0A0MRZ7 120 aa11.42□□□□□ -0.58
LIME1-201ENST00000309546 SMIM13P0DJ93 91 aa11.42□□□□□ -0.58
LIME1-201ENST00000309546 LINC00304Q8N9R0 145 aa11.41□□□□□ -0.58
LIME1-201ENST00000309546 HIGD2AQ9BW72 106 aa11.4□□□□□ -0.58
LIME1-201ENST00000309546 NCR3O14931 201 aa11.38□□□□□ -0.59
LIME1-201ENST00000309546 TRGC2P03986 189 aa11.38□□□□□ -0.59
LIME1-201ENST00000309546 BOD1L2Q8IYS8 172 aa11.38□□□□□ -0.59
LIME1-201ENST00000309546 MIR7-3HGQ8N6C7 128 aa11.38□□□□□ -0.59
LIME1-201ENST00000309546 HERV-K104P63124 156 aa11.37□□□□□ -0.59
LIME1-201ENST00000309546 PLEKHB2Q96CS7 222 aa11.37□□□□□ -0.59
LIME1-201ENST00000309546 RETNLBQ9BQ08 111 aa11.37□□□□□ -0.59
LIME1-201ENST00000309546 NDUFA12Q9UI09 145 aa11.37□□□□□ -0.59
LIME1-201ENST00000309546 LEPROTL1O95214 131 aa11.35□□□□□ -0.59
LIME1-201ENST00000309546 MYMXA0A1B0GTQ4 84 aa11.34□□□□□ -0.59
LIME1-201ENST00000309546 SERF1AO75920 110 aa11.34□□□□□ -0.59
LIME1-201ENST00000309546 C3orf22Q8N5N4 141 aa11.34□□□□□ -0.59
LIME1-201ENST00000309546 COLCA2A8K830 154 aa11.33□□□□□ -0.6
LIME1-201ENST00000309546 PRYO14603 147 aa11.33□□□□□ -0.6
LIME1-201ENST00000309546 LINC00587B1AMM8 73 aa11.32□□□□□ -0.6
LIME1-201ENST00000309546 LINC00310P59036 64 aa11.32□□□□□ -0.6
LIME1-201ENST00000309546 TSPEAR-AS2P59090 65 aa11.32□□□□□ -0.6
LIME1-201ENST00000309546 MAP1LC3CQ9BXW4 147 aa11.32□□□□□ -0.6
LIME1-201ENST00000309546 SPRR4Q96PI1 79 aa11.31□□□□□ -0.6
LIME1-201ENST00000309546 LEPROTO15243 131 aa11.29□□□□□ -0.6
LIME1-201ENST00000309546 FABP4P15090 132 aa11.29□□□□□ -0.6
LIME1-201ENST00000309546 PLNP26678 52 aa11.29□□□□□ -0.6
LIME1-201ENST00000309546 DAND5Q8N907 189 aa11.29□□□□□ -0.6
LIME1-201ENST00000309546 PMCHL2Q9BQD1 86 aa11.29□□□□□ -0.6
LIME1-201ENST00000309546 ZNF706Q9Y5V0 76 aaPredicted RBP11.29□□□□□ -0.6
LIME1-201ENST00000309546 TRBV10-3A0A0K0K1G6 114 aa11.28□□□□□ -0.6
LIME1-201ENST00000309546 ETDCA0A1B0GVM5 59 aa11.28□□□□□ -0.6
LIME1-201ENST00000309546 KCNQ1DNQ9H478 68 aa11.28□□□□□ -0.6
LIME1-201ENST00000309546 HSPB8Q9UJY1 196 aa11.28□□□□□ -0.6
LIME1-201ENST00000309546 HERVK_113P61574 105 aa11.27□□□□□ -0.61
LIME1-201ENST00000309546 LINC00337Q8N6G1 96 aa11.27□□□□□ -0.61
LIME1-201ENST00000309546 DPM2O94777 84 aa11.26□□□□□ -0.61
LIME1-201ENST00000309546 SPRR1AP35321 89 aa11.26□□□□□ -0.61
LIME1-201ENST00000309546 J3QQQ9 107 aa11.25□□□□□ -0.61
LIME1-201ENST00000309546 S100A12P80511 92 aa11.25□□□□□ -0.61
LIME1-201ENST00000309546 SMCR5Q8TEV8 140 aa11.25□□□□□ -0.61
LIME1-201ENST00000309546 PPDPFQ9H3Y8 114 aa11.25□□□□□ -0.61
LIME1-201ENST00000309546 LGALS3P17931 250 aaKnown RBP11.24□□□□□ -0.61
LIME1-201ENST00000309546 IGLV7-46A0A075B6I9 117 aa11.23□□□□□ -0.61
LIME1-201ENST00000309546 IGKCP01834 107 aa11.23□□□□□ -0.61
LIME1-201ENST00000309546 MIEN1Q9BRT3 115 aa11.23□□□□□ -0.61
LIME1-201ENST00000309546 MUC2Q02817 5179 aa11.22□□□□□ -0.61
LIME1-201ENST00000309546 KRTAP4-16G5E9R7 235 aaPredicted RBP11.22□□□□□ -0.61
LIME1-201ENST00000309546 DDTP30046 118 aa11.21□□□□□ -0.61
LIME1-201ENST00000309546 NMUP48645 174 aa11.21□□□□□ -0.61
LIME1-201ENST00000309546 CTAG1AP78358 180 aa11.21□□□□□ -0.61
LIME1-201ENST00000309546 C4orf48Q5BLP8 95 aa11.21□□□□□ -0.61
LIME1-201ENST00000309546 CDIP1Q9H305 208 aa11.21□□□□□ -0.61
LIME1-201ENST00000309546 SPAG11AQ6PDA7 123 aa11.2□□□□□ -0.62
LIME1-201ENST00000309546 Q8NBF4 154 aa11.2□□□□□ -0.62
LIME1-201ENST00000309546 LOC107984156A0A0G2JMH3 177 aa11.19□□□□□ -0.62
LIME1-201ENST00000309546 TPRXLQ17RH7 258 aa11.19□□□□□ -0.62
LIME1-201ENST00000309546 ARL17AQ8IVW1 177 aa11.19□□□□□ -0.62
LIME1-201ENST00000309546 SPANXB1Q9NS25 103 aaPredicted RBP11.19□□□□□ -0.62
LIME1-201ENST00000309546 TRBV10-2A0A0K0K1G8 114 aa11.18□□□□□ -0.62
LIME1-201ENST00000309546 A0A0U1RQV1 116 aa11.18□□□□□ -0.62
LIME1-201ENST00000309546 B5MCH6 92 aa11.18□□□□□ -0.62
LIME1-201ENST00000309546 NPC2P61916 151 aa11.18□□□□□ -0.62
LIME1-201ENST00000309546 GAGE2AQ6NT46 116 aa11.18□□□□□ -0.62
LIME1-201ENST00000309546 S100A7L2Q5SY68 101 aa11.17□□□□□ -0.62
LIME1-201ENST00000309546 ERC2-IT1O76042 136 aa11.15□□□□□ -0.62
LIME1-201ENST00000309546 NDUFC2O95298 119 aa11.14□□□□□ -0.63
LIME1-201ENST00000309546 LINC00483Q53H64 154 aa11.14□□□□□ -0.63
LIME1-201ENST00000309546 IGLV9-49A0A0B4J1Y8 123 aa11.13□□□□□ -0.63
LIME1-201ENST00000309546 A0A0J9YXY3 114 aa11.13□□□□□ -0.63
LIME1-201ENST00000309546 SOSTDC1Q6X4U4 206 aa11.13□□□□□ -0.63
LIME1-201ENST00000309546 Q6ZRX8 168 aa11.13□□□□□ -0.63
LIME1-201ENST00000309546 Q9BRP9 147 aa11.13□□□□□ -0.63
LIME1-201ENST00000309546 TRAV23DV6A0A075B6W5 121 aa11.12□□□□□ -0.63
LIME1-201ENST00000309546 E9PLD3 99 aa11.12□□□□□ -0.63
LIME1-201ENST00000309546 MOBPQ13875 183 aa11.12□□□□□ -0.63
LIME1-201ENST00000309546 MUC17Q685J3 4493 aa11.12□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BKO60814 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 IGLV6-57P01721 117 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BJP06899 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BOP23527 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BBP33778 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BDP58876 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BCP62807 126 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms